RchiOBHm_Chr5g0051431
RLK Family

cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000106
Physical Location & Seq
Forward (+)
52629175 .. 52630403
1229 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32890

Sequence Viewer

Length: 486 bp
ATGCAGTTTTTAATGGGGCTAAACGAATCTTACTCTAATAATCGTGGCTCAATCCTGATGATGAACCCTCTCCCAGATACAAAGAAGGTCCGTAGTCTCATCCTCCAACATGAAAGGCAGATGGAAGCGACAACATGTCGTGAACGCCCACCAATTTCTCTTGCTATGCAAGCTGCACGTACATCAGGCACCTCAAAGACTATGTTCTTTCGCAAACCGCTGAATTGTACATATTGTGAAGAGGAGAATCATCTAGTGGATCGATACTACTACCTTAAAGGGTTTCCAGTGGGTCACAAATGGCATGTGAAGAATGTGAAGCCTAGAAACAAGAGGCCTGCTGCCTACAATGTGGAGACAAAGACAGAACCTGCTAATGAGAGCCCAACCTTCACCGCTGAAGAATACAAGCAGATCATGGCTTTGCTTCACAATAAAAATGGACGTGGAAAAGAAGAGGACGATTGGCCCAGGCAAGCATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_3 Retrotrans_gag

Protein Analysis

161

Amino Acids

18.8

Weight (kDa)

9.38

Isoelectric Point (pI)

49.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20980 AT3G21000
fragaria_vesca FvH4_1g15931 FvH4_1g15931 FvH4_1g18381 FvH4_1g18382 FvH4_1g22571 FvH4_1g24950 FvH4_1g29372 FvH4_2g03582 FvH4_2g09851 FvH4_2g13112 FvH4_2g20843 FvH4_2g22701 FvH4_2g22702 FvH4_2g23403 FvH4_2g40201 FvH4_3g03542 FvH4_3g03543 FvH4_3g04761 FvH4_3g10464 FvH4_3g12741 FvH4_3g15781 FvH4_3g30981 FvH4_4g00985 FvH4_4g07035 FvH4_4g08192 FvH4_4g08211 FvH4_4g08553 FvH4_4g14242 FvH4_4g14243 FvH4_4g14641 FvH4_4g14843 FvH4_4g14844 FvH4_4g15061 FvH4_4g16281 FvH4_4g19152 FvH4_4g26451 FvH4_5g06442 FvH4_5g22521 FvH4_5g24301 FvH4_5g38641 FvH4_6g02393 FvH4_6g12782 FvH4_6g13871 FvH4_6g19391 FvH4_6g20105 FvH4_6g21292 FvH4_6g23581 FvH4_6g29153 FvH4_6g29691 FvH4_6g30871 FvH4_6g33351 FvH4_6g37042 FvH4_6g38781 FvH4_6g40340 FvH4_7g11221 FvH4_7g23352 FvH4_7g23352 FvH4_7g31212 FvH4_7g32172 FvH4_7g32173 FvH4_7g33701
malus_domestica MD03G1006900.v1.1 MD04G1039100.v1.1 MD04G1239100.v1.1 MD05G1048700.v1.1 MD08G1001800.v1.1 MD09G1165800.v1.1 MD11G1065200.v1.1 MD11G1138200.v1.1 MD14G1033300.v1.1 MD14G1173900.v1.1 MD15G1218200.v1.1 MD16G1034000.v1.1
prunus_persica Prupe.1G219500_v2.0.a1 Prupe.2G169400_v2.0.a1 Prupe.4G109700_v2.0.a1 Prupe.7G022000_v2.0.a1
pyrus_communis pycom01g02000 pycom02g13350 pycom03g01010 pycom04g05000 pycom04g06100 pycom05g05580 pycom05g09950 pycom05g13280 pycom05g26610 pycom06g05940 pycom06g07760 pycom07g06120 pycom07g24780 pycom08g08820 pycom09g03600 pycom09g07200 pycom10g01280 pycom10g06730 pycom10g08410 pycom10g25520 pycom11g00470 pycom11g05250 pycom11g25180 pycom12g08050 pycom13g14760 pycom13g28170 pycom15g14310 pycom15g19880 pycom15g24230 pycom15g33640 pycom16g02150 pycom16g16240 pycom16g20050 pycom16g21090 pycom17g06100
rosa_chinensis RchiOBHm_Chr1g0322161 RchiOBHm_Chr1g0326341 RchiOBHm_Chr1g0357701 RchiOBHm_Chr1g0379861 RchiOBHm_Chr1g0383421 RchiOBHm_Chr2g0093981 RchiOBHm_Chr2g0139051 RchiOBHm_Chr2g0145501 RchiOBHm_Chr3g0450971 RchiOBHm_Chr3g0451441 RchiOBHm_Chr3g0457411 RchiOBHm_Chr4g0436261 RchiOBHm_Chr5g0051431 RchiOBHm_Chr5g0064031 RchiOBHm_Chr5g0073141 RchiOBHm_Chr5g0080061 RchiOBHm_Chr7g0200561 RchiOBHm_Chr7g0235911
rosa_laevigata RLG00000000145 RLG00000000429 RLG00000020339 RLG00000035212
rosa_multiflora Rmu_co7977988.1_g000001 Rmu_co8037866.1_g000001 Rmu_co8243895.1_g000001 Rmu_co8363787.1_g000001 Rmu_co8381003.1_g000001 Rmu_sc0000263.1_g000006 Rmu_sc0000349.1_g000002 Rmu_sc0000455.1_g000031 Rmu_sc0000936.1_g000022 Rmu_sc0001035.1_g000023 Rmu_sc0001169.1_g000019 Rmu_sc0001250.1_g000026 Rmu_sc0002200.1_g000051 Rmu_sc0002230.1_g000027 Rmu_sc0002591.1_g000039 Rmu_sc0003182.1_g000003 Rmu_sc0003441.1_g000068 Rmu_sc0003722.1_g000018 Rmu_sc0003764.1_g000007 Rmu_sc0006014.1_g000016 Rmu_sc0012582.1_g000002 Rmu_sc0013519.1_g000002 Rmu_sc0014550.1_g000005 Rmu_sc0014857.1_g000007 Rmu_sc0019855.1_g000001 Rmu_sc0030839.1_g000001 Rmu_sc0031308.1_g000001
rosa_roxburghii Rroxscaffold_1G00011290 Rroxscaffold_1G00041340 Rroxscaffold_1G00053780 Rroxscaffold_1G00059130 Rroxscaffold_1G00061580 Rroxscaffold_2G00080940 Rroxscaffold_2G00109540 Rroxscaffold_3G00228400 Rroxscaffold_3G00237710 Rroxscaffold_4G00285210 Rroxscaffold_4G00299600 Rroxscaffold_4G00324940 Rroxscaffold_4G00330580 Rroxscaffold_5G00333000 Rroxscaffold_5G00347920 Rroxscaffold_5G00375310 Rroxscaffold_6G00394760 Rroxscaffold_6G00406260 Rroxscaffold_7G00165690 Rroxscaffold_7G00187680
rosa_rugosa Rorug01G0050200 Rorug02G0273800 Rorug06G0490600 Rorug06G0490600 Rorug06G0490700
rosa_samantha Rh1AG348400 Rh5AG222600 Rh6DG000500 Rh6DG194500 Rh7BG452700
rosa_wichuraiana Rw0G003060 Rw0G010530 Rw0G012970 Rw0G022560 Rw0G023390 Rw1G001270 Rw1G001530 Rw1G006070 Rw1G008210 Rw1G022090 Rw1G023320 Rw2G003790 Rw2G004140 Rw2G005280 Rw2G006460 Rw2G019620 Rw2G019840 Rw2G022530 Rw2G023280 Rw2G024990 Rw2G042380 Rw2G051390 Rw3G001640 Rw3G016720 Rw3G017100 Rw3G020890 Rw3G020900 Rw3G021100 Rw4G004820 Rw4G014950 Rw4G030920 Rw4G031400 Rw5G008500 Rw5G017950 Rw5G020170 Rw5G030160 Rw5G033050 Rw5G034640 Rw5G043920 Rw6G005060 Rw6G005540 Rw6G006720 Rw6G008460 Rw6G008670 Rw6G014780 Rw6G019100 Rw6G019350 Rw6G026310 Rw7G016810 Rw7G019180 Rw7G022890 Rw7G025880 Rw7G026390 Rw7G028340 Rw7G034850 Rw7G035170 Rw7G035420 Rw7G037990 Rw7G041560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 379
AccB1I GGYRCC 1 cut(s) 188
AciI CCGC 2 cut(s) 218, 396
AclWI GGATC 1 cut(s) 267
AcuI CTGAAG 1 cut(s) 420
AfaI GTAC 2 cut(s) 181, 229
AflIII ACRYGT 1 cut(s) 134
AhdI GACNNNNNGTC 1 cut(s) 135
AjiI CACGTC 1 cut(s) 446
AjnI CCWGG 1 cut(s) 470
AluBI AGCT 1 cut(s) 173
AluI AGCT 1 cut(s) 173
Alw26I GTCTC 2 cut(s) 101, 350
AlwI GGATC 1 cut(s) 267
AlwNI CAGNNNCTG 1 cut(s) 371
AoxI GGCC 2 cut(s) 335, 467
ApeKI GCWGC 2 cut(s) 173, 341
AspS9I GGNCC 2 cut(s) 88, 468
AsuHPI GGTGA 1 cut(s) 385
AvaII GGWCC 1 cut(s) 88
BanI GGYRCC 1 cut(s) 188
BanII GRGCYC 1 cut(s) 386
BbvI GCAGC 2 cut(s) 160, 328
BccI CCATC 1 cut(s) 115
BciT130I CCWGG 1 cut(s) 472
BcoDI GTCTC 2 cut(s) 101, 350
BfaI CTAG 2 cut(s) 254, 324
BfuAI ACCTGC 1 cut(s) 379
BisI GCNGC 2 cut(s) 174, 342
BlsI GCNGC 2 cut(s) 175, 343
Bme1390I CCNGG 1 cut(s) 472
Bme18I GGWCC 1 cut(s) 88
BmeRI GACNNNNNGTC 1 cut(s) 135
BmgBI CACGTC 1 cut(s) 446
BmgT120I GGNCC 2 cut(s) 88, 468
BmiI GGNNCC 1 cut(s) 190
BmrFI CCNGG 1 cut(s) 472
Bsa29I ATCGAT 1 cut(s) 262
BsaAI YACGTR 1 cut(s) 179
BsaJI CCNNGG 1 cut(s) 470
Bse1I ACTGG 1 cut(s) 287
BseBI CCWGG 1 cut(s) 472
BseCI ATCGAT 1 cut(s) 262
BseDI CCNNGG 1 cut(s) 470
BseGI GGATG 1 cut(s) 99
BseNI ACTGG 1 cut(s) 287
BseRI GAGGAG 1 cut(s) 257
BseXI GCAGC 2 cut(s) 160, 328
BsgI GTGCAG 1 cut(s) 159
BshFI GGCC 2 cut(s) 337, 469
BshNI GGYRCC 1 cut(s) 188
BshVI ATCGAT 1 cut(s) 262
BsmAI GTCTC 2 cut(s) 101, 350
BsnI GGCC 2 cut(s) 337, 469
Bsp1286I GDGCHC 1 cut(s) 386
Bsp1407I TGTACA 1 cut(s) 227
Bsp143I GATC 2 cut(s) 259, 414
BspACI CCGC 2 cut(s) 218, 396
BspANI GGCC 2 cut(s) 337, 469
BspDI ATCGAT 1 cut(s) 262
BspLI GGNNCC 1 cut(s) 190
BspMI ACCTGC 1 cut(s) 379
BspPI GGATC 1 cut(s) 267
BspT107I GGYRCC 1 cut(s) 188
BsrGI TGTACA 1 cut(s) 227
BsrI ACTGG 1 cut(s) 287
BssECI CCNNGG 1 cut(s) 470
BssMI GATC 2 cut(s) 259, 414
Bst2UI CCWGG 1 cut(s) 472
Bst6I CTCTTC 2 cut(s) 234, 450
BstAUI TGTACA 1 cut(s) 227
BstBAI YACGTR 1 cut(s) 179
BstC8I GCNNGC 3 cut(s) 171, 339, 477
BstF5I GGATG 1 cut(s) 99
BstKTI GATC 2 cut(s) 262, 417
BstMAI GTCTC 2 cut(s) 101, 350
BstMBI GATC 2 cut(s) 259, 414
BstMWI GCNNNNNNNGC 1 cut(s) 170
BstNI CCWGG 1 cut(s) 472
BstNSI RCATGY 2 cut(s) 138, 308
BstSCI CCNGG 1 cut(s) 470
BstV1I GCAGC 2 cut(s) 160, 328
Bsu15I ATCGAT 1 cut(s) 262
BsuRI GGCC 2 cut(s) 337, 469
BsuTUI ATCGAT 1 cut(s) 262
BtrI CACGTC 1 cut(s) 446
BtsCI GGATG 1 cut(s) 99
BtsIMutI CAGTG 1 cut(s) 294
BveI ACCTGC 1 cut(s) 379
Cac8I GCNNGC 3 cut(s) 171, 339, 477
CaiI CAGNNNCTG 1 cut(s) 371
Cfr13I GGNCC 2 cut(s) 88, 468
ClaI ATCGAT 1 cut(s) 262
Csp6I GTAC 2 cut(s) 180, 228
CviAII CATG 4 cut(s) 110, 135, 305, 418
CviJI RGCY 8 cut(s) 19, 48, 173, 322, 337, 384, 422, 469
CviKI_1 RGCY 8 cut(s) 19, 48, 173, 322, 337, 384, 422, 469
CviQI GTAC 2 cut(s) 180, 228
DpnI GATC 2 cut(s) 261, 416
DpnII GATC 2 cut(s) 259, 414
DriI GACNNNNNGTC 1 cut(s) 135
Eam1104I CTCTTC 2 cut(s) 234, 450
Eam1105I GACNNNNNGTC 1 cut(s) 135
EarI CTCTTC 2 cut(s) 234, 450
Eco147I AGGCCT 1 cut(s) 337
Eco24I GRGCYC 1 cut(s) 386
Eco47I GGWCC 1 cut(s) 88
Eco57I CTGAAG 1 cut(s) 420
EcoRII CCWGG 1 cut(s) 470
EcoT38I GRGCYC 1 cut(s) 386
FaeI CATG 4 cut(s) 113, 138, 308, 421
FaiI YATR 7 cut(s) 111, 136, 167, 203, 232, 306, 419
FatI CATG 4 cut(s) 109, 134, 304, 417
Fnu4HI GCNGC 2 cut(s) 174, 342
FokI GGATG 1 cut(s) 86
FriOI GRGCYC 1 cut(s) 386
Fsp4HI GCNGC 2 cut(s) 174, 342
FspBI CTAG 2 cut(s) 254, 324
GluI GCNGC 2 cut(s) 174, 342
HaeIII GGCC 2 cut(s) 337, 469
Hin1II CATG 4 cut(s) 113, 138, 308, 421
HinfI GANTC 2 cut(s) 26, 247
HphI GGTGA 1 cut(s) 385
Hpy166II GTNNAC 1 cut(s) 143
Hpy188III TCNNGA 2 cut(s) 55, 140
Hpy8I GTNNAC 1 cut(s) 143
HpyAV CCTTC 2 cut(s) 79, 400
HpyCH4IV ACGT 2 cut(s) 178, 445
HpyCH4V TGCA 3 cut(s) 4, 169, 176
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
HpySE526I ACGT 2 cut(s) 178, 445
Hsp92II CATG 4 cut(s) 113, 138, 308, 421
Kzo9I GATC 2 cut(s) 259, 414
LpnPI CCDG 7 cut(s) 68, 87, 171, 300, 351, 384, 457
Lsp1109I GCAGC 2 cut(s) 160, 328
MaeI CTAG 2 cut(s) 254, 324
MaeII ACGT 2 cut(s) 178, 445
MaeIII GTNAC 1 cut(s) 293
MalI GATC 2 cut(s) 261, 416
MboI GATC 2 cut(s) 259, 414
MboII GAAGA 4 cut(s) 251, 322, 413, 467
MhlI GDGCHC 1 cut(s) 386
MluCI AATT 2 cut(s) 153, 223
MmeI TCCRAC 1 cut(s) 130
MnlI CCTC 6 cut(s) 78, 113, 202, 235, 327, 451
MseI TTAA 3 cut(s) 11, 276, 484
MspA1I CMGCKG 2 cut(s) 220, 398
MspR9I CCNGG 1 cut(s) 472
MvaI CCWGG 1 cut(s) 472
MwoI GCNNNNNNNGC 1 cut(s) 170
NdeII GATC 2 cut(s) 259, 414
NlaIII CATG 4 cut(s) 113, 138, 308, 421
NlaIV GGNNCC 1 cut(s) 190
NmuCI GTSAC 1 cut(s) 293
NspI RCATGY 2 cut(s) 138, 308
PceI AGGCCT 1 cut(s) 337
PciI ACATGT 1 cut(s) 134
PfeI GAWTC 2 cut(s) 26, 247
PkrI GCNGC 2 cut(s) 175, 343
Ppu21I YACGTR 1 cut(s) 179
PscI ACATGT 1 cut(s) 134
Psp6I CCWGG 1 cut(s) 470
PspGI CCWGG 1 cut(s) 470
PspN4I GGNNCC 1 cut(s) 190
PspPI GGNCC 2 cut(s) 88, 468
PstNI CAGNNNCTG 1 cut(s) 371
RsaI GTAC 2 cut(s) 181, 229
RsaNI GTAC 2 cut(s) 180, 228
SaqAI TTAA 3 cut(s) 11, 276, 484
SatI GCNGC 2 cut(s) 174, 342
Sau3AI GATC 2 cut(s) 259, 414
Sau96I GGNCC 2 cut(s) 88, 468
ScrFI CCNGG 1 cut(s) 472
SduI GDGCHC 1 cut(s) 386
SetI ASST 8 cut(s) 90, 175, 181, 194, 276, 373, 392, 448
SinI GGWCC 1 cut(s) 88
Sse9I AATT 2 cut(s) 153, 223
SseBI AGGCCT 1 cut(s) 337
SsiI CCGC 2 cut(s) 218, 396
SspMI CTAG 2 cut(s) 254, 324
StuI AGGCCT 1 cut(s) 337
StyD4I CCNGG 1 cut(s) 470
TaiI ACGT 2 cut(s) 181, 448
TaqI TCGA 1 cut(s) 262
TasI AATT 2 cut(s) 153, 223
TatI WGTACW 1 cut(s) 227
TfiI GAWTC 2 cut(s) 26, 247
Tru1I TTAA 3 cut(s) 11, 276, 484
Tru9I TTAA 3 cut(s) 11, 276, 484
TscAI CASTG 1 cut(s) 294
TseFI GTSAC 1 cut(s) 293
TseI GCWGC 2 cut(s) 173, 341
Tsp45I GTSAC 1 cut(s) 293
TspDTI ATGAA 2 cut(s) 77, 126
TspGWI ACGGA 1 cut(s) 80
TspRI CASTG 1 cut(s) 294
VpaK11BI GGWCC 1 cut(s) 88
XceI RCATGY 2 cut(s) 138, 308
XspI CTAG 2 cut(s) 254, 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.