Rw6G006720

Reverse transcriptase (RNA-dependent DNA polymerase)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000106
Physical Location & Seq
Forward (+)
10767957 .. 10769088
1132 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G006720.1

Sequence Viewer

Length: 735 bp
ATGTCAAAGGAGATTTCCGGCAGCGTCCTTCAGTGCAAGGACGCAAGAAGTATGTGGCTCGAACTGCAAGAGAGATTTTCCCACACCAACACCGGTGCAAACTCAGTCACATCATTCTTCACAAAACTGAAAAGCCTCTGGGATGAAAAAGATGCATTGTGTGCGTTTCCTCCTTGCAATTGTGAGACAGCCACTGAAGTCAAGGCCTATTTGGGGACACAAAAGACCATGAAGTTTCTGATGGGGCTTAGTGACAACTACGCAACGATCCGGAGTAACGTAATTGGCATGGATCCTCTCCCAAGCGTGAACAAGGCGTATGCCATGGCGCTGAGGCATGAGAAACAAGCAGAGGTCTCTAATGGAAAGGCAATAGCTACACCTGAAGCATCTGCCTTCTCAGTGAAGAAGGTTAATCGTGGTTTCAATCCTATAGAAAGGGAAGTCAAGTGTGAAAAGTGCAATATGACCAATCACAGTACAAAGAACTGCAGAGCACACCTCAAGTGCACCTATTGCAATGGGAAAGGGCACACTTATGATTATTGCCGAAGAAGGAAGAATGCAATGGAGGCCATGATTGATTTTCCGTTTTCACGAGAAGAATGTCACCAGCTCCTCGGCCAGCTTTTAACCAAAACCAAGCCCGCTGCAGCTAACTTGGCTAGTAATATTCCAAACTATGAGGAACTTTCAGGACCTACGATCGGGGAAGATGATTGGGACGGGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2

Protein Analysis

244

Amino Acids

27.29

Weight (kDa)

8.43

Isoelectric Point (pI)

40.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20980 AT3G21000
fragaria_vesca FvH4_1g15931 FvH4_1g15931 FvH4_1g18381 FvH4_1g18382 FvH4_1g22571 FvH4_1g24950 FvH4_1g29372 FvH4_2g03582 FvH4_2g09851 FvH4_2g13112 FvH4_2g20843 FvH4_2g22701 FvH4_2g22702 FvH4_2g23403 FvH4_2g40201 FvH4_3g03542 FvH4_3g03543 FvH4_3g04761 FvH4_3g10464 FvH4_3g12741 FvH4_3g15781 FvH4_3g30981 FvH4_4g00985 FvH4_4g07035 FvH4_4g08192 FvH4_4g08211 FvH4_4g08553 FvH4_4g14242 FvH4_4g14243 FvH4_4g14641 FvH4_4g14843 FvH4_4g14844 FvH4_4g15061 FvH4_4g16281 FvH4_4g19152 FvH4_4g26451 FvH4_5g06442 FvH4_5g22521 FvH4_5g24301 FvH4_5g38641 FvH4_6g02393 FvH4_6g12782 FvH4_6g13871 FvH4_6g19391 FvH4_6g20105 FvH4_6g21292 FvH4_6g23581 FvH4_6g29153 FvH4_6g29691 FvH4_6g30871 FvH4_6g33351 FvH4_6g37042 FvH4_6g38781 FvH4_6g40340 FvH4_7g11221 FvH4_7g23352 FvH4_7g23352 FvH4_7g31212 FvH4_7g32172 FvH4_7g32173 FvH4_7g33701
malus_domestica MD03G1006900.v1.1 MD04G1039100.v1.1 MD04G1239100.v1.1 MD05G1048700.v1.1 MD08G1001800.v1.1 MD09G1165800.v1.1 MD11G1065200.v1.1 MD11G1138200.v1.1 MD14G1033300.v1.1 MD14G1173900.v1.1 MD15G1218200.v1.1 MD16G1034000.v1.1
prunus_persica Prupe.1G219500_v2.0.a1 Prupe.2G169400_v2.0.a1 Prupe.4G109700_v2.0.a1 Prupe.7G022000_v2.0.a1
pyrus_communis pycom01g02000 pycom02g13350 pycom03g01010 pycom04g05000 pycom04g06100 pycom05g05580 pycom05g09950 pycom05g13280 pycom05g26610 pycom06g05940 pycom06g07760 pycom07g06120 pycom07g24780 pycom08g08820 pycom09g03600 pycom09g07200 pycom10g01280 pycom10g06730 pycom10g08410 pycom10g25520 pycom11g00470 pycom11g05250 pycom11g25180 pycom12g08050 pycom13g14760 pycom13g28170 pycom15g14310 pycom15g19880 pycom15g24230 pycom15g33640 pycom16g02150 pycom16g16240 pycom16g20050 pycom16g21090 pycom17g06100
rosa_chinensis RchiOBHm_Chr1g0322161 RchiOBHm_Chr1g0326341 RchiOBHm_Chr1g0357701 RchiOBHm_Chr1g0379861 RchiOBHm_Chr1g0383421 RchiOBHm_Chr2g0093981 RchiOBHm_Chr2g0139051 RchiOBHm_Chr2g0145501 RchiOBHm_Chr3g0450971 RchiOBHm_Chr3g0451441 RchiOBHm_Chr3g0457411 RchiOBHm_Chr4g0436261 RchiOBHm_Chr5g0051431 RchiOBHm_Chr5g0064031 RchiOBHm_Chr5g0073141 RchiOBHm_Chr5g0080061 RchiOBHm_Chr7g0200561 RchiOBHm_Chr7g0235911
rosa_laevigata RLG00000000145 RLG00000000429 RLG00000020339 RLG00000035212
rosa_multiflora Rmu_co7977988.1_g000001 Rmu_co8037866.1_g000001 Rmu_co8243895.1_g000001 Rmu_co8363787.1_g000001 Rmu_co8381003.1_g000001 Rmu_sc0000263.1_g000006 Rmu_sc0000349.1_g000002 Rmu_sc0000455.1_g000031 Rmu_sc0000936.1_g000022 Rmu_sc0001035.1_g000023 Rmu_sc0001169.1_g000019 Rmu_sc0001250.1_g000026 Rmu_sc0002200.1_g000051 Rmu_sc0002230.1_g000027 Rmu_sc0002591.1_g000039 Rmu_sc0003182.1_g000003 Rmu_sc0003441.1_g000068 Rmu_sc0003722.1_g000018 Rmu_sc0003764.1_g000007 Rmu_sc0006014.1_g000016 Rmu_sc0012582.1_g000002 Rmu_sc0013519.1_g000002 Rmu_sc0014550.1_g000005 Rmu_sc0014857.1_g000007 Rmu_sc0019855.1_g000001 Rmu_sc0030839.1_g000001 Rmu_sc0031308.1_g000001
rosa_roxburghii Rroxscaffold_1G00011290 Rroxscaffold_1G00041340 Rroxscaffold_1G00053780 Rroxscaffold_1G00059130 Rroxscaffold_1G00061580 Rroxscaffold_2G00080940 Rroxscaffold_2G00109540 Rroxscaffold_3G00228400 Rroxscaffold_3G00237710 Rroxscaffold_4G00285210 Rroxscaffold_4G00299600 Rroxscaffold_4G00324940 Rroxscaffold_4G00330580 Rroxscaffold_5G00333000 Rroxscaffold_5G00347920 Rroxscaffold_5G00375310 Rroxscaffold_6G00394760 Rroxscaffold_6G00406260 Rroxscaffold_7G00165690 Rroxscaffold_7G00187680
rosa_rugosa Rorug01G0050200 Rorug02G0273800 Rorug06G0490600 Rorug06G0490600 Rorug06G0490700
rosa_samantha Rh1AG348400 Rh5AG222600 Rh6DG000500 Rh6DG194500 Rh7BG452700
rosa_wichuraiana Rw0G003060 Rw0G010530 Rw0G012970 Rw0G022560 Rw0G023390 Rw1G001270 Rw1G001530 Rw1G006070 Rw1G008210 Rw1G022090 Rw1G023320 Rw2G003790 Rw2G004140 Rw2G005280 Rw2G006460 Rw2G019620 Rw2G019840 Rw2G022530 Rw2G023280 Rw2G024990 Rw2G042380 Rw2G051390 Rw3G001640 Rw3G016720 Rw3G017100 Rw3G020890 Rw3G020900 Rw3G021100 Rw4G004820 Rw4G014950 Rw4G030920 Rw4G031400 Rw5G008500 Rw5G017950 Rw5G020170 Rw5G030160 Rw5G033050 Rw5G034640 Rw5G043920 Rw6G005060 Rw6G005540 Rw6G006720 Rw6G008460 Rw6G008670 Rw6G014780 Rw6G019100 Rw6G019350 Rw6G026310 Rw7G016810 Rw7G019180 Rw7G022890 Rw7G025880 Rw7G026390 Rw7G028340 Rw7G034850 Rw7G035170 Rw7G035420 Rw7G037990 Rw7G041560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 270
AciI CCGC 1 cut(s) 648
AclWI GGATC 3 cut(s) 262, 287, 300
AcoI YGGCCR 1 cut(s) 622
AcuI CTGAAG 3 cut(s) 14, 216, 405
AfaI GTAC 1 cut(s) 481
AfiI CCNNNNNNNGG 2 cut(s) 213, 707
AgeI ACCGGT 1 cut(s) 92
AgsI TTSAA 1 cut(s) 427
AluBI AGCT 4 cut(s) 377, 616, 628, 656
AluI AGCT 4 cut(s) 377, 616, 628, 656
Alw21I GWGCWC 2 cut(s) 499, 512
Alw26I GTCTC 2 cut(s) 179, 361
Alw44I GTGCAC 1 cut(s) 508
AlwI GGATC 3 cut(s) 262, 287, 300
AlwNI CAGNNNCTG 1 cut(s) 194
Aor13HI TCCGGA 1 cut(s) 270
AoxI GGCC 3 cut(s) 204, 573, 622
ApaLI GTGCAC 1 cut(s) 508
ApeKI GCWGC 3 cut(s) 21, 650, 653
AsiGI ACCGGT 1 cut(s) 92
AspLEI GCGC 1 cut(s) 331
AspS9I GGNCC 1 cut(s) 698
AsuHPI GGTGA 1 cut(s) 602
AvaII GGWCC 1 cut(s) 698
BaeGI GKGCMC 2 cut(s) 512, 534
BamHI GGATCC 1 cut(s) 292
BauI CACGAG 1 cut(s) 597
Bbv12I GWGCWC 2 cut(s) 499, 512
BbvCI CCTCAGC 1 cut(s) 332
BbvI GCAGC 3 cut(s) 33, 637, 665
BccI CCATC 1 cut(s) 235
BcoDI GTCTC 2 cut(s) 179, 361
BfaI CTAG 1 cut(s) 666
BfmI CTRYAG 3 cut(s) 432, 490, 651
BfoI RGCGCY 1 cut(s) 332
BisI GCNGC 3 cut(s) 22, 651, 654
BlsI GCNGC 3 cut(s) 23, 652, 655
Bme18I GGWCC 1 cut(s) 698
BmgT120I GGNCC 1 cut(s) 698
BmiI GGNNCC 1 cut(s) 294
BmsI GCATC 2 cut(s) 142, 398
BplI GAGNNNNNCTC 2 cut(s) 486, 518
Bpu10I CCTNAGC 1 cut(s) 332
BpuEI CTTGAG 1 cut(s) 488
BsaI GGTCTC 1 cut(s) 361
BsaJI CCNNGG 2 cut(s) 324, 619
BsaWI WCCGGW 2 cut(s) 92, 270
Bsc4I CCNNNNNNNGG 2 cut(s) 213, 707
Bse118I RCCGGY 1 cut(s) 92
Bse3DI GCAATG 2 cut(s) 526, 573
BseAI TCCGGA 1 cut(s) 270
BseDI CCNNGG 2 cut(s) 324, 619
BseGI GGATG 1 cut(s) 148
BseLI CCNNNNNNNGG 2 cut(s) 213, 707
BseMI GCAATG 2 cut(s) 526, 573
BseMII CTCAG 3 cut(s) 117, 323, 414
BseRI GAGGAG 1 cut(s) 608
BseSI GKGCMC 2 cut(s) 512, 534
BseXI GCAGC 3 cut(s) 33, 637, 665
Bsh1285I CGRYCG 1 cut(s) 708
BshFI GGCC 3 cut(s) 206, 575, 624
BshTI ACCGGT 1 cut(s) 92
BsiEI CGRYCG 1 cut(s) 708
BsiHKAI GWGCWC 2 cut(s) 499, 512
BsiSI CCGG 3 cut(s) 18, 93, 271
BslFI GGGAC 1 cut(s) 229
BslI CCNNNNNNNGG 2 cut(s) 213, 707
BsmAI GTCTC 2 cut(s) 179, 361
BsmFI GGGAC 1 cut(s) 229
BsmI GAATGC 1 cut(s) 568
BsnI GGCC 3 cut(s) 206, 575, 624
Bso31I GGTCTC 1 cut(s) 361
Bsp1286I GDGCHC 3 cut(s) 499, 512, 534
Bsp13I TCCGGA 1 cut(s) 270
Bsp143I GATC 3 cut(s) 267, 292, 705
Bsp19I CCATGG 1 cut(s) 324
BspACI CCGC 1 cut(s) 648
BspANI GGCC 3 cut(s) 206, 575, 624
BspCNI CTCAG 3 cut(s) 116, 324, 413
BspEI TCCGGA 1 cut(s) 270
BspLI GGNNCC 1 cut(s) 294
BspMAI CTGCAG 2 cut(s) 494, 655
BspPI GGATC 3 cut(s) 262, 287, 300
BspTNI GGTCTC 1 cut(s) 361
BsrDI GCAATG 2 cut(s) 526, 573
BsrFI RCCGGY 1 cut(s) 92
BssAI RCCGGY 1 cut(s) 92
BssECI CCNNGG 2 cut(s) 324, 619
BssMI GATC 3 cut(s) 267, 292, 705
BssSI CACGAG 1 cut(s) 597
BssT1I CCWWGG 1 cut(s) 324
Bst2BI CACGAG 1 cut(s) 597
Bst4CI ACNGT 1 cut(s) 479
BstAPI GCANNNNNTGC 2 cut(s) 161, 516
BstC8I GCNNGC 2 cut(s) 626, 648
BstDEI CTNAG 4 cut(s) 103, 248, 332, 400
BstDSI CCRYGG 1 cut(s) 324
BstF5I GGATG 1 cut(s) 148
BstH2I RGCGCY 1 cut(s) 332
BstHHI GCGC 1 cut(s) 331
BstKTI GATC 3 cut(s) 270, 295, 708
BstMAI GTCTC 2 cut(s) 179, 361
BstMBI GATC 3 cut(s) 267, 292, 705
BstMCI CGRYCG 1 cut(s) 708
BstMWI GCNNNNNNNGC 5 cut(s) 64, 161, 516, 572, 662
BstSFI CTRYAG 3 cut(s) 432, 490, 651
BstSLI GKGCMC 2 cut(s) 512, 534
BstV1I GCAGC 3 cut(s) 33, 637, 665
BstX2I RGATCY 1 cut(s) 292
BstYI RGATCY 1 cut(s) 292
BsuRI GGCC 3 cut(s) 206, 575, 624
BtgI CCRYGG 1 cut(s) 324
BtsCI GGATG 1 cut(s) 148
BtsIMutI CAGTG 3 cut(s) 38, 192, 408
Cac8I GCNNGC 2 cut(s) 626, 648
CaiI CAGNNNCTG 1 cut(s) 194
CfoI GCGC 1 cut(s) 331
Cfr10I RCCGGY 1 cut(s) 92
Cfr13I GGNCC 1 cut(s) 698
CseI GACGC 2 cut(s) 13, 50
Csp6I GTAC 1 cut(s) 480
CspAI ACCGGT 1 cut(s) 92
CviAII CATG 5 cut(s) 229, 289, 325, 338, 577
CviQI GTAC 1 cut(s) 480
DdeI CTNAG 4 cut(s) 103, 248, 332, 400
DpnI GATC 3 cut(s) 269, 294, 707
DpnII GATC 3 cut(s) 267, 292, 705
EaeI YGGCCR 1 cut(s) 622
Eco130I CCWWGG 1 cut(s) 324
Eco147I AGGCCT 1 cut(s) 206
Eco31I GGTCTC 1 cut(s) 361
Eco47I GGWCC 1 cut(s) 698
Eco57I CTGAAG 3 cut(s) 14, 216, 405
EcoO109I RGGNCCY 1 cut(s) 698
EcoT14I CCWWGG 1 cut(s) 324
EcoT22I ATGCAT 1 cut(s) 157
ErhI CCWWGG 1 cut(s) 324
FaeI CATG 5 cut(s) 232, 292, 328, 341, 580
FaqI GGGAC 1 cut(s) 229
FatI CATG 5 cut(s) 228, 288, 324, 337, 576
FauI CCCGC 1 cut(s) 655
Fnu4HI GCNGC 3 cut(s) 22, 651, 654
FokI GGATG 1 cut(s) 155
Fsp4HI GCNGC 3 cut(s) 22, 651, 654
FspBI CTAG 1 cut(s) 666
GlaI GCGC 1 cut(s) 330
GluI GCNGC 3 cut(s) 22, 651, 654
HaeII RGCGCY 1 cut(s) 332
HaeIII GGCC 3 cut(s) 206, 575, 624
HapII CCGG 3 cut(s) 18, 93, 271
HgaI GACGC 2 cut(s) 13, 50
HhaI GCGC 1 cut(s) 331
Hin1II CATG 5 cut(s) 232, 292, 328, 341, 580
Hin6I GCGC 1 cut(s) 329
HinP1I GCGC 1 cut(s) 329
HpaII CCGG 3 cut(s) 18, 93, 271
HphI GGTGA 1 cut(s) 602
Hpy166II GTNNAC 2 cut(s) 310, 510
Hpy188I TCNGA 1 cut(s) 240
Hpy188III TCNNGA 3 cut(s) 271, 597, 696
Hpy8I GTNNAC 2 cut(s) 310, 510
HpyAV CCTTC 4 cut(s) 38, 403, 406, 549
HpyCH4III ACNGT 1 cut(s) 479
HpyCH4IV ACGT 1 cut(s) 279
HpyF10VI GCNNNNNNNGC 5 cut(s) 64, 161, 516, 572, 662
HpyF3I CTNAG 4 cut(s) 103, 248, 332, 400
HpySE526I ACGT 1 cut(s) 279
Hsp92II CATG 5 cut(s) 232, 292, 328, 341, 580
HspAI GCGC 1 cut(s) 329
Kpn2I TCCGGA 1 cut(s) 270
Kzo9I GATC 3 cut(s) 267, 292, 705
LmnI GCTCC 1 cut(s) 621
LpnPI CCDG 8 cut(s) 31, 106, 124, 284, 396, 626, 638, 681
Lsp1109I GCAGC 3 cut(s) 33, 637, 665
LweI GCATC 2 cut(s) 142, 398
MaeI CTAG 1 cut(s) 666
MaeII ACGT 1 cut(s) 279
MaeIII GTNAC 4 cut(s) 106, 251, 275, 608
MalI GATC 3 cut(s) 269, 294, 707
MboI GATC 3 cut(s) 267, 292, 705
MboII GAAGA 6 cut(s) 109, 418, 564, 571, 614, 725
MfeI CAATTG 1 cut(s) 178
MflI RGATCY 1 cut(s) 292
MhlI GDGCHC 3 cut(s) 499, 512, 534
MluCI AATT 2 cut(s) 178, 282
MnlI CCTC 9 cut(s) 146, 180, 306, 327, 346, 512, 565, 629, 679
Mph1103I ATGCAT 1 cut(s) 157
MroI TCCGGA 1 cut(s) 270
MseI TTAA 2 cut(s) 414, 632
MslI CAYNNNNRTG 1 cut(s) 537
MspA1I CMGCKG 1 cut(s) 650
MspI CCGG 3 cut(s) 18, 93, 271
MunI CAATTG 1 cut(s) 178
Mva1269I GAATGC 1 cut(s) 568
MwoI GCNNNNNNNGC 5 cut(s) 64, 161, 516, 572, 662
NcoI CCATGG 1 cut(s) 324
NdeII GATC 3 cut(s) 267, 292, 705
NlaIII CATG 5 cut(s) 232, 292, 328, 341, 580
NlaIV GGNNCC 1 cut(s) 294
NmeAIII GCCGAG 1 cut(s) 600
NmuCI GTSAC 3 cut(s) 106, 251, 608
NsiI ATGCAT 1 cut(s) 157
PceI AGGCCT 1 cut(s) 206
PctI GAATGC 1 cut(s) 568
PinAI ACCGGT 1 cut(s) 92
PkrI GCNGC 3 cut(s) 23, 652, 655
Ple19I CGATCG 1 cut(s) 708
PpuMI RGGWCCY 1 cut(s) 698
Psp5II RGGWCCY 1 cut(s) 698
PspN4I GGNNCC 1 cut(s) 294
PspPI GGNCC 1 cut(s) 698
PspPPI RGGWCCY 1 cut(s) 698
PstI CTGCAG 2 cut(s) 494, 655
PstNI CAGNNNCTG 1 cut(s) 194
PsuI RGATCY 1 cut(s) 292
PvuI CGATCG 1 cut(s) 708
RsaI GTAC 1 cut(s) 481
RsaNI GTAC 1 cut(s) 480
RseI CAYNNNNRTG 1 cut(s) 537
SaqAI TTAA 2 cut(s) 414, 632
SatI GCNGC 3 cut(s) 22, 651, 654
Sau3AI GATC 3 cut(s) 267, 292, 705
Sau96I GGNCC 1 cut(s) 698
SduI GDGCHC 3 cut(s) 499, 512, 534
SfaNI GCATC 2 cut(s) 142, 398
SfcI CTRYAG 3 cut(s) 432, 490, 651
SgrAI CRCCGGYG 1 cut(s) 92
SinI GGWCC 1 cut(s) 698
SmiMI CAYNNNNRTG 1 cut(s) 537
SmlI CTYRAG 1 cut(s) 503
SmoI CTYRAG 1 cut(s) 503
Sse9I AATT 2 cut(s) 178, 282
SseBI AGGCCT 1 cut(s) 206
SsiI CCGC 1 cut(s) 648
SspI AATATT 1 cut(s) 673
SspMI CTAG 1 cut(s) 666
StuI AGGCCT 1 cut(s) 206
StyI CCWWGG 1 cut(s) 324
TaaI ACNGT 1 cut(s) 479
TaiI ACGT 1 cut(s) 282
TaqI TCGA 1 cut(s) 60
TasI AATT 2 cut(s) 178, 282
TatI WGTACW 1 cut(s) 479
Tru1I TTAA 2 cut(s) 414, 632
Tru9I TTAA 2 cut(s) 414, 632
TscAI CASTG 3 cut(s) 38, 199, 408
TseFI GTSAC 3 cut(s) 106, 251, 608
TseI GCWGC 3 cut(s) 21, 650, 653
Tsp45I GTSAC 3 cut(s) 106, 251, 608
TspDTI ATGAA 2 cut(s) 159, 245
TspGWI ACGGA 1 cut(s) 579
TspRI CASTG 3 cut(s) 38, 199, 408
VneI GTGCAC 1 cut(s) 508
VpaK11BI GGWCC 1 cut(s) 698
XspI CTAG 1 cut(s) 666
Zsp2I ATGCAT 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.