pycom07g06120

ribonuclease H protein At1g65750

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0000106
Physical Location & Seq
Forward (+)
5420886 .. 5422697
1812 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g06120.2

Sequence Viewer

Length: 1017 bp
ATGTGGGAAAGGGCTACCTGGCTGAGGGGCTCTTCAAAAAGGAATGTACTTTCTGCTAATGCTATTAATAATAACAAGCCTAGTGCTTCTTCTGCTTACTTGATTAAGTCTTCTACATTCTGGCATGCAAGATTAGACATTCATATAAATACTATACTTGAATCTGCAGAAGTTGAGTTCTTTGAGGAAATTTTTCCTTATAAAGATAGGTCATATGTTTTGAACAAAAGAGTACATGAGGTTACTACAAGAAATGATGACGATAATCATGCTTCAACTTCTAGAGTTCAAAGCCAAGATTTGGAACCACGAAAGAGTAAAAGAGCAAAAATTGCAAAGGATTTTGGTCCTGATTTCCTCACATTTGTAACCGAAGAAGAGCCTCAAACTTATAAGGCTGCATTAGAATCATCTGAAGCACCTTATTGGAAAGAAGCTATTCAAAGTGAAATAGAATCCATCATGCAAAATAATACATGGGAATTGGTTAATTTGCCTCCTGAAAATAAACCAATAGGACACAAATGGATTTTCAAGAGGAAATTGAGACCGGATGGTACCATAGACAAGTATAAGGCTTGTTTAGTTGCCAAAGGGTATCGTCAAAAAGAAGGACTTGACTACTTTGACACTTATTCACCAGTAGCTAGAATAACATCTATAAGGTTATTAATAGCTATAGTGTCTGTGTACAATCTTGAGATACATCAAATGGATGTCAAGACTGCATTTCTAAATGGTGAATTAGACGAAGAAATATATATGGATCAACCTGAAGGTTTCATTGTCAAAGGTCAAGAAAAGAAAGTTTGCAAGTTGATTAAGTCATTATATGGACTCAAACAAGCGCCTAAGCAATGGCATGAAAAATTCGATCATAATATGATTACGAATGGATTTGTAATCAATGAAAGTGATAAATGCATTTATGTTAAGAAAACGAAAAATGCTTGTGTTATTGTATGTCTATATGTTGATGACATGCTTATAATGGGAACAAACAAAGATGTGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

339

Amino Acids

39.12

Weight (kDa)

7.62

Isoelectric Point (pI)

48.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20980 AT3G21000
fragaria_vesca FvH4_1g15931 FvH4_1g15931 FvH4_1g18381 FvH4_1g18382 FvH4_1g22571 FvH4_1g24950 FvH4_1g29372 FvH4_2g03582 FvH4_2g09851 FvH4_2g13112 FvH4_2g20843 FvH4_2g22701 FvH4_2g22702 FvH4_2g23403 FvH4_2g40201 FvH4_3g03542 FvH4_3g03543 FvH4_3g04761 FvH4_3g10464 FvH4_3g12741 FvH4_3g15781 FvH4_3g30981 FvH4_4g00985 FvH4_4g07035 FvH4_4g08192 FvH4_4g08211 FvH4_4g08553 FvH4_4g14242 FvH4_4g14243 FvH4_4g14641 FvH4_4g14843 FvH4_4g14844 FvH4_4g15061 FvH4_4g16281 FvH4_4g19152 FvH4_4g26451 FvH4_5g06442 FvH4_5g22521 FvH4_5g24301 FvH4_5g38641 FvH4_6g02393 FvH4_6g12782 FvH4_6g13871 FvH4_6g19391 FvH4_6g20105 FvH4_6g21292 FvH4_6g23581 FvH4_6g29153 FvH4_6g29691 FvH4_6g30871 FvH4_6g33351 FvH4_6g37042 FvH4_6g38781 FvH4_6g40340 FvH4_7g11221 FvH4_7g23352 FvH4_7g23352 FvH4_7g31212 FvH4_7g32172 FvH4_7g32173 FvH4_7g33701
malus_domestica MD03G1006900.v1.1 MD04G1039100.v1.1 MD04G1239100.v1.1 MD05G1048700.v1.1 MD08G1001800.v1.1 MD09G1165800.v1.1 MD11G1065200.v1.1 MD11G1138200.v1.1 MD14G1033300.v1.1 MD14G1173900.v1.1 MD15G1218200.v1.1 MD16G1034000.v1.1
prunus_persica Prupe.1G219500_v2.0.a1 Prupe.2G169400_v2.0.a1 Prupe.4G109700_v2.0.a1 Prupe.7G022000_v2.0.a1
pyrus_communis pycom01g02000 pycom02g13350 pycom03g01010 pycom04g05000 pycom04g06100 pycom05g05580 pycom05g09950 pycom05g13280 pycom05g26610 pycom06g05940 pycom06g07760 pycom07g06120 pycom07g24780 pycom08g08820 pycom09g03600 pycom09g07200 pycom10g01280 pycom10g06730 pycom10g08410 pycom10g25520 pycom11g00470 pycom11g05250 pycom11g25180 pycom12g08050 pycom13g14760 pycom13g28170 pycom15g14310 pycom15g19880 pycom15g24230 pycom15g33640 pycom16g02150 pycom16g16240 pycom16g20050 pycom16g21090 pycom17g06100
rosa_chinensis RchiOBHm_Chr1g0322161 RchiOBHm_Chr1g0326341 RchiOBHm_Chr1g0357701 RchiOBHm_Chr1g0379861 RchiOBHm_Chr1g0383421 RchiOBHm_Chr2g0093981 RchiOBHm_Chr2g0139051 RchiOBHm_Chr2g0145501 RchiOBHm_Chr3g0450971 RchiOBHm_Chr3g0451441 RchiOBHm_Chr3g0457411 RchiOBHm_Chr4g0436261 RchiOBHm_Chr5g0051431 RchiOBHm_Chr5g0064031 RchiOBHm_Chr5g0073141 RchiOBHm_Chr5g0080061 RchiOBHm_Chr7g0200561 RchiOBHm_Chr7g0235911
rosa_laevigata RLG00000000145 RLG00000000429 RLG00000020339 RLG00000035212
rosa_multiflora Rmu_co7977988.1_g000001 Rmu_co8037866.1_g000001 Rmu_co8243895.1_g000001 Rmu_co8363787.1_g000001 Rmu_co8381003.1_g000001 Rmu_sc0000263.1_g000006 Rmu_sc0000349.1_g000002 Rmu_sc0000455.1_g000031 Rmu_sc0000936.1_g000022 Rmu_sc0001035.1_g000023 Rmu_sc0001169.1_g000019 Rmu_sc0001250.1_g000026 Rmu_sc0002200.1_g000051 Rmu_sc0002230.1_g000027 Rmu_sc0002591.1_g000039 Rmu_sc0003182.1_g000003 Rmu_sc0003441.1_g000068 Rmu_sc0003722.1_g000018 Rmu_sc0003764.1_g000007 Rmu_sc0006014.1_g000016 Rmu_sc0012582.1_g000002 Rmu_sc0013519.1_g000002 Rmu_sc0014550.1_g000005 Rmu_sc0014857.1_g000007 Rmu_sc0019855.1_g000001 Rmu_sc0030839.1_g000001 Rmu_sc0031308.1_g000001
rosa_roxburghii Rroxscaffold_1G00011290 Rroxscaffold_1G00041340 Rroxscaffold_1G00053780 Rroxscaffold_1G00059130 Rroxscaffold_1G00061580 Rroxscaffold_2G00080940 Rroxscaffold_2G00109540 Rroxscaffold_3G00228400 Rroxscaffold_3G00237710 Rroxscaffold_4G00285210 Rroxscaffold_4G00299600 Rroxscaffold_4G00324940 Rroxscaffold_4G00330580 Rroxscaffold_5G00333000 Rroxscaffold_5G00347920 Rroxscaffold_5G00375310 Rroxscaffold_6G00394760 Rroxscaffold_6G00406260 Rroxscaffold_7G00165690 Rroxscaffold_7G00187680
rosa_rugosa Rorug01G0050200 Rorug02G0273800 Rorug06G0490600 Rorug06G0490600 Rorug06G0490700
rosa_samantha Rh1AG348400 Rh5AG222600 Rh6DG000500 Rh6DG194500 Rh7BG452700
rosa_wichuraiana Rw0G003060 Rw0G010530 Rw0G012970 Rw0G022560 Rw0G023390 Rw1G001270 Rw1G001530 Rw1G006070 Rw1G008210 Rw1G022090 Rw1G023320 Rw2G003790 Rw2G004140 Rw2G005280 Rw2G006460 Rw2G019620 Rw2G019840 Rw2G022530 Rw2G023280 Rw2G024990 Rw2G042380 Rw2G051390 Rw3G001640 Rw3G016720 Rw3G017100 Rw3G020890 Rw3G020900 Rw3G021100 Rw4G004820 Rw4G014950 Rw4G030920 Rw4G031400 Rw5G008500 Rw5G017950 Rw5G020170 Rw5G030160 Rw5G033050 Rw5G034640 Rw5G043920 Rw6G005060 Rw6G005540 Rw6G006720 Rw6G008460 Rw6G008670 Rw6G014780 Rw6G019100 Rw6G019350 Rw6G026310 Rw7G016810 Rw7G019180 Rw7G022890 Rw7G025880 Rw7G026390 Rw7G028340 Rw7G034850 Rw7G035170 Rw7G035420 Rw7G037990 Rw7G041560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 201, 393, 989
Acc65I GGTACC 1 cut(s) 557
AccB1I GGYRCC 1 cut(s) 557
AccB7I CCANNNNNTGG 1 cut(s) 301
AclWI GGATC 1 cut(s) 774
AcsI RAATTY 2 cut(s) 189, 869
AcuI CTGAAG 2 cut(s) 435, 795
AfaI GTAC 4 cut(s) 48, 234, 559, 692
AfiI CCNNNNNNNGG 2 cut(s) 24, 301
AgsI TTSAA 7 cut(s) 36, 161, 223, 276, 290, 443, 535
AjnI CCWGG 1 cut(s) 17
AluBI AGCT 3 cut(s) 437, 647, 677
AluI AGCT 3 cut(s) 437, 647, 677
Alw26I GTCTC 1 cut(s) 541
AlwI GGATC 1 cut(s) 774
ApeKI GCWGC 1 cut(s) 398
ApoI RAATTY 2 cut(s) 189, 869
AseI ATTAAT 2 cut(s) 66, 671
Asp700I GAANNNNTTC 2 cut(s) 192, 438
Asp718I GGTACC 1 cut(s) 557
AspLEI GCGC 1 cut(s) 850
AspS9I GGNCC 1 cut(s) 347
AsuHPI GGTGA 2 cut(s) 630, 752
AvaII GGWCC 1 cut(s) 347
BanI GGYRCC 1 cut(s) 557
BanII GRGCYC 1 cut(s) 32
BbsI GAAGAC 1 cut(s) 102
BbvCI CCTCAGC 1 cut(s) 23
BbvI GCAGC 1 cut(s) 385
BccI CCATC 2 cut(s) 467, 548
BcgI CGANNNNNNTGC 2 cut(s) 251, 285
BciT130I CCWGG 1 cut(s) 19
BcoDI GTCTC 1 cut(s) 541
BfaI CTAG 3 cut(s) 81, 282, 648
BfmI CTRYAG 2 cut(s) 165, 678
BfoI RGCGCY 1 cut(s) 851
BisI GCNGC 1 cut(s) 399
BlsI GCNGC 1 cut(s) 400
Bme1390I CCNGG 1 cut(s) 19
Bme18I GGWCC 1 cut(s) 347
BmgT120I GGNCC 1 cut(s) 347
BmiI GGNNCC 2 cut(s) 306, 559
BmrFI CCNGG 1 cut(s) 19
BpiI GAAGAC 1 cut(s) 102
Bpu10I CCTNAGC 2 cut(s) 23, 852
BpuEI CTTGAG 1 cut(s) 719
BsaI GGTCTC 1 cut(s) 541
BsaWI WCCGGW 1 cut(s) 550
Bsc4I CCNNNNNNNGG 2 cut(s) 24, 301
Bse1I ACTGG 1 cut(s) 641
Bse3DI GCAATG 1 cut(s) 863
BseBI CCWGG 1 cut(s) 19
BseGI GGATG 2 cut(s) 559, 721
BseLI CCNNNNNNNGG 2 cut(s) 24, 301
BseMI GCAATG 1 cut(s) 863
BseMII CTCAG 1 cut(s) 14
BseNI ACTGG 1 cut(s) 641
BseXI GCAGC 1 cut(s) 385
BshNI GGYRCC 1 cut(s) 557
BsiSI CCGG 1 cut(s) 551
BslI CCNNNNNNNGG 2 cut(s) 24, 301
BsmAI GTCTC 1 cut(s) 541
Bso31I GGTCTC 1 cut(s) 541
Bsp1286I GDGCHC 1 cut(s) 32
Bsp1407I TGTACA 1 cut(s) 690
Bsp143I GATC 2 cut(s) 766, 874
BspCNI CTCAG 1 cut(s) 15
BspLI GGNNCC 2 cut(s) 306, 559
BspMAI CTGCAG 1 cut(s) 169
BspPI GGATC 1 cut(s) 774
BspQI GCTCTTC 2 cut(s) 37, 372
BspT107I GGYRCC 1 cut(s) 557
BspTNI GGTCTC 1 cut(s) 541
BsrDI GCAATG 1 cut(s) 863
BsrGI TGTACA 1 cut(s) 690
BsrI ACTGG 1 cut(s) 641
BssMI GATC 2 cut(s) 766, 874
Bst2UI CCWGG 1 cut(s) 19
Bst6I CTCTTC 2 cut(s) 37, 372
BstAPI GCANNNNNTGC 1 cut(s) 332
BstAUI TGTACA 1 cut(s) 690
BstC8I GCNNGC 1 cut(s) 126
BstDEI CTNAG 2 cut(s) 23, 852
BstENI CCTNNNNNAGG 1 cut(s) 22
BstF5I GGATG 2 cut(s) 559, 721
BstH2I RGCGCY 1 cut(s) 851
BstHHI GCGC 1 cut(s) 850
BstKTI GATC 2 cut(s) 769, 877
BstMAI GTCTC 1 cut(s) 541
BstMBI GATC 2 cut(s) 766, 874
BstMWI GCNNNNNNNGC 2 cut(s) 92, 332
BstNI CCWGG 1 cut(s) 19
BstNSI RCATGY 2 cut(s) 128, 985
BstSCI CCNGG 1 cut(s) 17
BstSFI CTRYAG 2 cut(s) 165, 678
BstV1I GCAGC 1 cut(s) 385
BstV2I GAAGAC 1 cut(s) 102
BtsCI GGATG 2 cut(s) 559, 721
Cac8I GCNNGC 1 cut(s) 126
CfoI GCGC 1 cut(s) 850
Cfr13I GGNCC 1 cut(s) 347
Csp6I GTAC 4 cut(s) 47, 233, 558, 691
CviAII CATG 7 cut(s) 125, 236, 269, 463, 477, 863, 982
CviQI GTAC 4 cut(s) 47, 233, 558, 691
DdeI CTNAG 2 cut(s) 23, 852
DpnI GATC 2 cut(s) 768, 876
DpnII GATC 2 cut(s) 766, 874
Eam1104I CTCTTC 2 cut(s) 37, 372
EarI CTCTTC 2 cut(s) 37, 372
Eco24I GRGCYC 1 cut(s) 32
Eco31I GGTCTC 1 cut(s) 541
Eco47I GGWCC 1 cut(s) 347
Eco57I CTGAAG 2 cut(s) 435, 795
EcoNI CCTNNNNNAGG 1 cut(s) 22
EcoRII CCWGG 1 cut(s) 17
EcoT22I ATGCAT 1 cut(s) 926
EcoT38I GRGCYC 1 cut(s) 32
FaeI CATG 7 cut(s) 128, 239, 272, 466, 480, 866, 985
FalI AAGNNNNNCTT 2 cut(s) 600, 632
FatI CATG 7 cut(s) 124, 235, 268, 462, 476, 862, 981
FauNDI CATATG 1 cut(s) 214
Fnu4HI GCNGC 1 cut(s) 399
FokI GGATG 2 cut(s) 566, 728
FriOI GRGCYC 1 cut(s) 32
Fsp4HI GCNGC 1 cut(s) 399
FspBI CTAG 3 cut(s) 81, 282, 648
GlaI GCGC 1 cut(s) 849
GluI GCNGC 1 cut(s) 399
HaeII RGCGCY 1 cut(s) 851
HapII CCGG 1 cut(s) 551
HhaI GCGC 1 cut(s) 850
Hin1II CATG 7 cut(s) 128, 239, 272, 466, 480, 866, 985
Hin6I GCGC 1 cut(s) 848
HinP1I GCGC 1 cut(s) 848
HinfI GANTC 4 cut(s) 161, 407, 455, 837
HpaII CCGG 1 cut(s) 551
HphI GGTGA 2 cut(s) 630, 752
Hpy166II GTNNAC 1 cut(s) 691
Hpy188I TCNGA 1 cut(s) 415
Hpy188III TCNNGA 7 cut(s) 282, 350, 500, 535, 698, 721, 797
Hpy8I GTNNAC 1 cut(s) 691
HpyAV CCTTC 2 cut(s) 605, 770
HpyCH4V TGCA 8 cut(s) 128, 167, 335, 401, 466, 728, 813, 924
HpyF10VI GCNNNNNNNGC 2 cut(s) 92, 332
HpyF3I CTNAG 2 cut(s) 23, 852
Hsp92II CATG 7 cut(s) 128, 239, 272, 466, 480, 866, 985
HspAI GCGC 1 cut(s) 848
KpnI GGTACC 1 cut(s) 561
Kzo9I GATC 2 cut(s) 766, 874
LguI GCTCTTC 2 cut(s) 37, 372
LpnPI CCDG 8 cut(s) 4, 31, 106, 363, 513, 564, 654, 786
Lsp1109I GCAGC 1 cut(s) 385
MaeI CTAG 3 cut(s) 81, 282, 648
MaeIII GTNAC 2 cut(s) 241, 367
MalI GATC 2 cut(s) 768, 876
MboI GATC 2 cut(s) 766, 874
MboII GAAGA 6 cut(s) 24, 81, 102, 386, 389, 764
MhlI GDGCHC 1 cut(s) 32
MluCI AATT 7 cut(s) 189, 330, 482, 490, 542, 743, 869
MlyI GAGTC 1 cut(s) 831
MnlI CCTC 7 cut(s) 18, 178, 232, 368, 393, 507, 531
Mph1103I ATGCAT 1 cut(s) 926
MroXI GAANNNNTTC 2 cut(s) 192, 438
MseI TTAA 7 cut(s) 66, 105, 489, 671, 822, 933, 1015
MspI CCGG 1 cut(s) 551
MspR9I CCNGG 1 cut(s) 19
MvaI CCWGG 1 cut(s) 19
MwoI GCNNNNNNNGC 2 cut(s) 92, 332
NdeI CATATG 1 cut(s) 214
NdeII GATC 2 cut(s) 766, 874
NlaIII CATG 7 cut(s) 128, 239, 272, 466, 480, 866, 985
NlaIV GGNNCC 2 cut(s) 306, 559
NsiI ATGCAT 1 cut(s) 926
NspI RCATGY 2 cut(s) 128, 985
PaeI GCATGC 1 cut(s) 128
PciSI GCTCTTC 2 cut(s) 37, 372
PdmI GAANNNNTTC 2 cut(s) 192, 438
PfeI GAWTC 3 cut(s) 161, 407, 455
PflMI CCANNNNNTGG 1 cut(s) 301
PkrI GCNGC 1 cut(s) 400
PleI GAGTC 1 cut(s) 831
PpsI GAGTC 1 cut(s) 831
PshBI ATTAAT 2 cut(s) 66, 671
PsiI TTATAA 3 cut(s) 201, 393, 989
Psp6I CCWGG 1 cut(s) 17
PspGI CCWGG 1 cut(s) 17
PspN4I GGNNCC 2 cut(s) 306, 559
PspPI GGNCC 1 cut(s) 347
PstI CTGCAG 1 cut(s) 169
RsaI GTAC 4 cut(s) 48, 234, 559, 692
RsaNI GTAC 4 cut(s) 47, 233, 558, 691
SapI GCTCTTC 2 cut(s) 37, 372
SaqAI TTAA 7 cut(s) 66, 105, 489, 671, 822, 933, 1015
SatI GCNGC 1 cut(s) 399
Sau3AI GATC 2 cut(s) 766, 874
Sau96I GGNCC 1 cut(s) 347
SchI GAGTC 1 cut(s) 831
ScrFI CCNGG 1 cut(s) 19
SduI GDGCHC 1 cut(s) 32
SfcI CTRYAG 2 cut(s) 165, 678
SinI GGWCC 1 cut(s) 347
SmlI CTYRAG 1 cut(s) 698
SmoI CTYRAG 1 cut(s) 698
SphI GCATGC 1 cut(s) 128
Sse9I AATT 7 cut(s) 189, 330, 482, 490, 542, 743, 869
SspMI CTAG 3 cut(s) 81, 282, 648
StyD4I CCNGG 1 cut(s) 17
TaqI TCGA 1 cut(s) 873
TasI AATT 7 cut(s) 189, 330, 482, 490, 542, 743, 869
TatI WGTACW 3 cut(s) 46, 232, 690
TfiI GAWTC 3 cut(s) 161, 407, 455
Tru1I TTAA 7 cut(s) 66, 105, 489, 671, 822, 933, 1015
Tru9I TTAA 7 cut(s) 66, 105, 489, 671, 822, 933, 1015
TseI GCWGC 1 cut(s) 398
TspDTI ATGAA 4 cut(s) 131, 772, 879, 924
Van91I CCANNNNNTGG 1 cut(s) 301
VpaK11BI GGWCC 1 cut(s) 347
VspI ATTAAT 2 cut(s) 66, 671
XagI CCTNNNNNAGG 1 cut(s) 22
XapI RAATTY 2 cut(s) 189, 869
XbaI TCTAGA 1 cut(s) 281
XceI RCATGY 2 cut(s) 128, 985
XmnI GAANNNNTTC 2 cut(s) 192, 438
XspI CTAG 3 cut(s) 81, 282, 648
Zsp2I ATGCAT 1 cut(s) 926
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.