Reverse transcriptase (RNA-dependent DNA polymerase)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_3 | PF14244 | 2 - 33 | 5.7e-10 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 697 |
| AciI | CCGC | 4 cut(s) | 96, 628, 647, 697 |
| AclWI | GGATC | 5 cut(s) | 135, 316, 500, 513, 804 |
| AcsI | RAATTY | 2 cut(s) | 446, 804 |
| AcuI | CTGAAG | 1 cut(s) | 813 |
| AfaI | GTAC | 1 cut(s) | 391 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 647, 989 |
| AgsI | TTSAA | 4 cut(s) | 274, 428, 637, 718 |
| AluBI | AGCT | 4 cut(s) | 315, 530, 563, 854 |
| AluI | AGCT | 4 cut(s) | 315, 530, 563, 854 |
| Alw21I | GWGCWC | 1 cut(s) | 725 |
| Alw26I | GTCTC | 1 cut(s) | 902 |
| Alw44I | GTGCAC | 1 cut(s) | 721 |
| AlwI | GGATC | 5 cut(s) | 135, 316, 500, 513, 804 |
| Ama87I | CYCGRG | 1 cut(s) | 213 |
| ApaLI | GTGCAC | 1 cut(s) | 721 |
| ApeKI | GCWGC | 3 cut(s) | 164, 401, 788 |
| ApoI | RAATTY | 2 cut(s) | 446, 804 |
| AspLEI | GCGC | 1 cut(s) | 697 |
| AspS9I | GGNCC | 1 cut(s) | 980 |
| AvaI | CYCGRG | 1 cut(s) | 213 |
| AvaII | GGWCC | 1 cut(s) | 980 |
| BaeGI | GKGCMC | 4 cut(s) | 28, 712, 725, 747 |
| BamHI | GGATCC | 1 cut(s) | 505 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 710, 742 |
| Bbv12I | GWGCWC | 1 cut(s) | 725 |
| BbvI | GCAGC | 3 cut(s) | 176, 388, 775 |
| BccI | CCATC | 4 cut(s) | 71, 601, 673, 1001 |
| BcoDI | GTCTC | 1 cut(s) | 902 |
| BfaI | CTAG | 1 cut(s) | 642 |
| BisI | GCNGC | 3 cut(s) | 165, 402, 789 |
| BlsI | GCNGC | 3 cut(s) | 166, 403, 790 |
| Bme18I | GGWCC | 1 cut(s) | 980 |
| BmeT110I | CYCGRG | 1 cut(s) | 213 |
| BmgT120I | GGNCC | 1 cut(s) | 980 |
| BmiI | GGNNCC | 2 cut(s) | 82, 507 |
| BmsI | GCATC | 2 cut(s) | 199, 941 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 230, 262, 232, 264 |
| Bsa29I | ATCGAT | 1 cut(s) | 130 |
| BsaJI | CCNNGG | 1 cut(s) | 813 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 647, 989 |
| Bse3DI | GCAATG | 1 cut(s) | 543 |
| BseCI | ATCGAT | 1 cut(s) | 130 |
| BseDI | CCNNGG | 1 cut(s) | 813 |
| BseGI | GGATG | 7 cut(s) | 214, 302, 361, 684, 847, 1003, 1012 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 647, 989 |
| BseMI | GCAATG | 1 cut(s) | 543 |
| BseMII | CTCAG | 2 cut(s) | 263, 330 |
| BseRI | GAGGAG | 2 cut(s) | 890, 899 |
| BseSI | GKGCMC | 4 cut(s) | 28, 712, 725, 747 |
| BseXI | GCAGC | 3 cut(s) | 176, 388, 775 |
| Bsh1236I | CGCG | 1 cut(s) | 697 |
| Bsh1285I | CGRYCG | 1 cut(s) | 990 |
| BshVI | ATCGAT | 1 cut(s) | 130 |
| BsiEI | CGRYCG | 1 cut(s) | 990 |
| BsiHKAI | GWGCWC | 1 cut(s) | 725 |
| BsiHKCI | CYCGRG | 1 cut(s) | 213 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 647, 989 |
| BsmAI | GTCTC | 1 cut(s) | 902 |
| BsmBI | CGTCTC | 1 cut(s) | 902 |
| BsoBI | CYCGRG | 1 cut(s) | 213 |
| Bsp1286I | GDGCHC | 4 cut(s) | 28, 712, 725, 747 |
| Bsp143I | GATC | 5 cut(s) | 127, 308, 505, 809, 987 |
| BspACI | CCGC | 4 cut(s) | 96, 628, 647, 697 |
| BspCNI | CTCAG | 2 cut(s) | 262, 329 |
| BspDI | ATCGAT | 1 cut(s) | 130 |
| BspFNI | CGCG | 1 cut(s) | 697 |
| BspLI | GGNNCC | 2 cut(s) | 82, 507 |
| BspPI | GGATC | 5 cut(s) | 135, 316, 500, 513, 804 |
| BsrDI | GCAATG | 1 cut(s) | 543 |
| BssECI | CCNNGG | 1 cut(s) | 813 |
| BssMI | GATC | 5 cut(s) | 127, 308, 505, 809, 987 |
| BssT1I | CCWWGG | 1 cut(s) | 813 |
| Bst4CI | ACNGT | 3 cut(s) | 262, 571, 761 |
| Bst6I | CTCTTC | 1 cut(s) | 516 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 729 |
| BstC8I | GCNNGC | 2 cut(s) | 561, 930 |
| BstDEI | CTNAG | 2 cut(s) | 249, 316 |
| BstF5I | GGATG | 7 cut(s) | 214, 302, 361, 684, 847, 1003, 1012 |
| BstFNI | CGCG | 1 cut(s) | 697 |
| BstHHI | GCGC | 1 cut(s) | 697 |
| BstKTI | GATC | 5 cut(s) | 130, 311, 508, 812, 990 |
| BstMAI | GTCTC | 1 cut(s) | 902 |
| BstMBI | GATC | 5 cut(s) | 127, 308, 505, 809, 987 |
| BstMCI | CGRYCG | 1 cut(s) | 990 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 104, 729 |
| BstSLI | GKGCMC | 4 cut(s) | 28, 712, 725, 747 |
| BstUI | CGCG | 1 cut(s) | 697 |
| BstV1I | GCAGC | 3 cut(s) | 176, 388, 775 |
| BstX2I | RGATCY | 1 cut(s) | 505 |
| BstYI | RGATCY | 1 cut(s) | 505 |
| Bsu15I | ATCGAT | 1 cut(s) | 130 |
| BsuTUI | ATCGAT | 1 cut(s) | 130 |
| BtsCI | GGATG | 7 cut(s) | 214, 302, 361, 684, 847, 1003, 1012 |
| BtsI | GCAGTG | 1 cut(s) | 690 |
| BtsIMutI | CAGTG | 1 cut(s) | 690 |
| Cac8I | GCNNGC | 2 cut(s) | 561, 930 |
| CfoI | GCGC | 1 cut(s) | 697 |
| Cfr13I | GGNCC | 1 cut(s) | 980 |
| ClaI | ATCGAT | 1 cut(s) | 130 |
| CseI | GACGC | 1 cut(s) | 374 |
| Csp6I | GTAC | 1 cut(s) | 390 |
| CviAII | CATG | 5 cut(s) | 21, 40, 169, 293, 442 |
| CviJI | RGCY | 9 cut(s) | 157, 167, 315, 401, 460, 530, 563, 854, 928 |
| CviKI_1 | RGCY | 9 cut(s) | 157, 167, 315, 401, 460, 530, 563, 854, 928 |
| CviQI | GTAC | 1 cut(s) | 390 |
| DdeI | CTNAG | 2 cut(s) | 249, 316 |
| DpnI | GATC | 5 cut(s) | 129, 310, 507, 811, 989 |
| DpnII | GATC | 5 cut(s) | 127, 308, 505, 809, 987 |
| Eam1104I | CTCTTC | 1 cut(s) | 516 |
| EarI | CTCTTC | 1 cut(s) | 516 |
| Eco130I | CCWWGG | 1 cut(s) | 813 |
| Eco47I | GGWCC | 1 cut(s) | 980 |
| Eco57I | CTGAAG | 1 cut(s) | 813 |
| Eco88I | CYCGRG | 1 cut(s) | 213 |
| EcoO109I | RGGNCCY | 1 cut(s) | 980 |
| EcoT14I | CCWWGG | 1 cut(s) | 813 |
| EcoT22I | ATGCAT | 1 cut(s) | 757 |
| ErhI | CCWWGG | 1 cut(s) | 813 |
| Esp3I | CGTCTC | 1 cut(s) | 902 |
| FaeI | CATG | 5 cut(s) | 24, 43, 172, 296, 445 |
| FatI | CATG | 5 cut(s) | 20, 39, 168, 292, 441 |
| FauI | CCCGC | 2 cut(s) | 103, 640 |
| Fnu4HI | GCNGC | 3 cut(s) | 165, 402, 789 |
| FokI | GGATG | 6 cut(s) | 221, 309, 368, 691, 854, 1010 |
| Fsp4HI | GCNGC | 3 cut(s) | 165, 402, 789 |
| FspBI | CTAG | 1 cut(s) | 642 |
| GlaI | GCGC | 1 cut(s) | 696 |
| GluI | GCNGC | 3 cut(s) | 165, 402, 789 |
| HgaI | GACGC | 1 cut(s) | 374 |
| HhaI | GCGC | 1 cut(s) | 697 |
| Hin1II | CATG | 5 cut(s) | 24, 43, 172, 296, 445 |
| Hin6I | GCGC | 1 cut(s) | 695 |
| HinP1I | GCGC | 1 cut(s) | 695 |
| HincII | GTYRAC | 1 cut(s) | 893 |
| HindII | GTYRAC | 1 cut(s) | 893 |
| HindIII | AAGCTT | 1 cut(s) | 528 |
| HinfI | GANTC | 4 cut(s) | 181, 243, 599, 909 |
| Hpy166II | GTNNAC | 6 cut(s) | 48, 199, 302, 723, 800, 893 |
| Hpy188I | TCNGA | 2 cut(s) | 252, 598 |
| Hpy188III | TCNNGA | 4 cut(s) | 55, 415, 657, 978 |
| Hpy8I | GTNNAC | 6 cut(s) | 48, 199, 302, 723, 800, 893 |
| HpyAV | CCTTC | 4 cut(s) | 58, 762, 788, 832 |
| HpyCH4III | ACNGT | 3 cut(s) | 262, 571, 761 |
| HpyCH4IV | ACGT | 1 cut(s) | 895 |
| HpyCH4V | TGCA | 8 cut(s) | 235, 404, 536, 614, 705, 723, 755, 932 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 104, 729 |
| HpyF3I | CTNAG | 2 cut(s) | 249, 316 |
| HpySE526I | ACGT | 1 cut(s) | 895 |
| Hsp92II | CATG | 5 cut(s) | 24, 43, 172, 296, 445 |
| HspAI | GCGC | 1 cut(s) | 695 |
| Kzo9I | GATC | 5 cut(s) | 127, 308, 505, 809, 987 |
| LpnPI | CCDG | 6 cut(s) | 98, 146, 406, 691, 942, 963 |
| Lsp1109I | GCAGC | 3 cut(s) | 176, 388, 775 |
| LweI | GCATC | 2 cut(s) | 199, 941 |
| MaeI | CTAG | 1 cut(s) | 642 |
| MaeII | ACGT | 1 cut(s) | 895 |
| MaeIII | GTNAC | 4 cut(s) | 134, 543, 761, 950 |
| MalI | GATC | 5 cut(s) | 129, 310, 507, 811, 989 |
| MboI | GATC | 5 cut(s) | 127, 308, 505, 809, 987 |
| MboII | GAAGA | 4 cut(s) | 17, 498, 503, 594 |
| MflI | RGATCY | 1 cut(s) | 505 |
| MhlI | GDGCHC | 4 cut(s) | 28, 712, 725, 747 |
| MluCI | AATT | 7 cut(s) | 230, 322, 446, 804, 865, 940, 961 |
| MlyI | GAGTC | 1 cut(s) | 903 |
| Mph1103I | ATGCAT | 1 cut(s) | 757 |
| MslI | CAYNNNNRTG | 2 cut(s) | 297, 750 |
| MvnI | CGCG | 1 cut(s) | 697 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 104, 729 |
| NdeII | GATC | 5 cut(s) | 127, 308, 505, 809, 987 |
| NlaIII | CATG | 5 cut(s) | 24, 43, 172, 296, 445 |
| NlaIV | GGNNCC | 2 cut(s) | 82, 507 |
| NmuCI | GTSAC | 1 cut(s) | 761 |
| NsiI | ATGCAT | 1 cut(s) | 757 |
| PaeR7I | CTCGAG | 1 cut(s) | 213 |
| PfeI | GAWTC | 3 cut(s) | 181, 243, 599 |
| PkrI | GCNGC | 3 cut(s) | 166, 403, 790 |
| Ple19I | CGATCG | 1 cut(s) | 990 |
| PleI | GAGTC | 1 cut(s) | 903 |
| PpsI | GAGTC | 1 cut(s) | 903 |
| PpuMI | RGGWCCY | 1 cut(s) | 980 |
| Psp5II | RGGWCCY | 1 cut(s) | 980 |
| PspN4I | GGNNCC | 2 cut(s) | 82, 507 |
| PspPI | GGNCC | 1 cut(s) | 980 |
| PspPPI | RGGWCCY | 1 cut(s) | 980 |
| PspXI | VCTCGAGB | 1 cut(s) | 213 |
| PsuI | RGATCY | 1 cut(s) | 505 |
| PvuI | CGATCG | 1 cut(s) | 990 |
| RsaI | GTAC | 1 cut(s) | 391 |
| RsaNI | GTAC | 1 cut(s) | 390 |
| RseI | CAYNNNNRTG | 2 cut(s) | 297, 750 |
| SatI | GCNGC | 3 cut(s) | 165, 402, 789 |
| Sau3AI | GATC | 5 cut(s) | 127, 308, 505, 809, 987 |
| Sau96I | GGNCC | 1 cut(s) | 980 |
| SchI | GAGTC | 1 cut(s) | 903 |
| SduI | GDGCHC | 4 cut(s) | 28, 712, 725, 747 |
| SfaNI | GCATC | 2 cut(s) | 199, 941 |
| Sfr274I | CTCGAG | 1 cut(s) | 213 |
| SinI | GGWCC | 1 cut(s) | 980 |
| SlaI | CTCGAG | 1 cut(s) | 213 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 297, 750 |
| SmlI | CTYRAG | 1 cut(s) | 213 |
| SmoI | CTYRAG | 1 cut(s) | 213 |
| Sse9I | AATT | 7 cut(s) | 230, 322, 446, 804, 865, 940, 961 |
| SsiI | CCGC | 4 cut(s) | 96, 628, 647, 697 |
| SspMI | CTAG | 1 cut(s) | 642 |
| StyI | CCWWGG | 1 cut(s) | 813 |
| TaaI | ACNGT | 3 cut(s) | 262, 571, 761 |
| TaiI | ACGT | 1 cut(s) | 898 |
| TaqI | TCGA | 3 cut(s) | 130, 214, 808 |
| TasI | AATT | 7 cut(s) | 230, 322, 446, 804, 865, 940, 961 |
| TfiI | GAWTC | 3 cut(s) | 181, 243, 599 |
| TscAI | CASTG | 1 cut(s) | 697 |
| TseFI | GTSAC | 1 cut(s) | 761 |
| TseI | GCWGC | 3 cut(s) | 164, 401, 788 |
| Tsp45I | GTSAC | 1 cut(s) | 761 |
| TspDTI | ATGAA | 5 cut(s) | 50, 126, 372, 412, 458 |
| TspGWI | ACGGA | 1 cut(s) | 422 |
| TspRI | CASTG | 1 cut(s) | 697 |
| VneI | GTGCAC | 1 cut(s) | 721 |
| VpaK11BI | GGWCC | 1 cut(s) | 980 |
| XapI | RAATTY | 2 cut(s) | 446, 804 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 499 |
| XhoI | CTCGAG | 1 cut(s) | 213 |
| XspI | CTAG | 1 cut(s) | 642 |
| Zsp2I | ATGCAT | 1 cut(s) | 757 |