Rroxscaffold_2G00109540

gag-polypeptide of LTR copia-type

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000106
Physical Location & Seq
Reverse (-)
33702891 .. 33704961
2071 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00109540.1

Sequence Viewer

Length: 1161 bp
ATGGGAGAAGGTTCAGATTCACCCAAAGCTGATATGTCAAATCCCTTCTACCTTCATCATTCAGATAATCTCGGTTTGATATTGGTCTCCAAACCACTCAATGGAGATAATTACTCCTCATGGCTGAGAGCCATGACAATAGCCCTAAACGCCAAGAACAAGCTTGGCTTTGTCAATGGTGTCATCAAACCTCCCTCAGCAGACAAGTATCCTAATGATTATGCGACTTGGTCTCGATGCAATGATATGATTCATTCTTGGATCATTAACTCCATTACTCCGGATATTTCTGACAGTGTCATATACTACACCACTGCTCGTGAGGTTTGGGAGGATCTTCGTGAGCGCTTCTCTCAAAGTAATGCTCCTCGCATCTTCGAAATACAGCGAGAGATTGCTTATCACCGGCAGGAACAATTGTCTGTTTCGACCTATTACACCAAGCTGAAAAGTCTATGGGATGAGTTGGCTTCCTATACTGATGCGTCATCTTGTTCATGTGGAGCACAACAAGATCGACAAAAGTTGATGCAGTTTCTAATGGGTCTAAATGAATCTTACACTGCTACTCGAGGACAAATACTCTTAATGAATCCTCTCCCTTCCGTCCGCCAAGCCTATTCCTCTGTTTGTCAAGAAGAAAAACAAAGACTTCTTAGTGCCACCAATGCGATTATAGAGACCAACTCAAGTGCTGCCATGGCTGTACGAAGCAACAGGCCCAACAATTCAACTGCTTCAACCGAAATTGGAAGAACAGATCGTACCTACAACAATCCACAGGACATGCGACGTTTTGACCAGGACAAGCGTCGCTTAGGTTCTTTCAGAGGAAGGCCTCACTGCACCTATTGTGGAGAGATGGGTCATTTTATTGATAGATGTTATCAACTGAACGGATATCCTCCGGGTCACCCAAAAGCAAGATTGGGTTCTAACTCTAAATCGAACCGTTTCAAGAATGCCCATGTAGCCAATCAAGTTTCTGAGGGTTTAAGCAAAGATGAAGGAAAGTCGGTGGTGACAACTGAAATTTCTGAAGCTCAAATACAGCAGCTTTTGTCTCTTCTCAAGGACAAAGATGGAAATACAATTTCTCAAGCAAATGCAGCAGTAACCAAACCAGGATCTAGATACGAGGAAGATGATTGGTTTGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_3

Protein Analysis

386

Amino Acids

43.51

Weight (kDa)

8.07

Isoelectric Point (pI)

40.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_3 PF14244 19 - 65 4.1e-21 gag-polypeptide of LTR copia-type
Retrotran_gag_2 PF14223 45 - 218 1.7e-12 gag-polypeptide of LTR copia-type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20980 AT3G21000
fragaria_vesca FvH4_1g15931 FvH4_1g15931 FvH4_1g18381 FvH4_1g18382 FvH4_1g22571 FvH4_1g24950 FvH4_1g29372 FvH4_2g03582 FvH4_2g09851 FvH4_2g13112 FvH4_2g20843 FvH4_2g22701 FvH4_2g22702 FvH4_2g23403 FvH4_2g40201 FvH4_3g03542 FvH4_3g03543 FvH4_3g04761 FvH4_3g10464 FvH4_3g12741 FvH4_3g15781 FvH4_3g30981 FvH4_4g00985 FvH4_4g07035 FvH4_4g08192 FvH4_4g08211 FvH4_4g08553 FvH4_4g14242 FvH4_4g14243 FvH4_4g14641 FvH4_4g14843 FvH4_4g14844 FvH4_4g15061 FvH4_4g16281 FvH4_4g19152 FvH4_4g26451 FvH4_5g06442 FvH4_5g22521 FvH4_5g24301 FvH4_5g38641 FvH4_6g02393 FvH4_6g12782 FvH4_6g13871 FvH4_6g19391 FvH4_6g20105 FvH4_6g21292 FvH4_6g23581 FvH4_6g29153 FvH4_6g29691 FvH4_6g30871 FvH4_6g33351 FvH4_6g37042 FvH4_6g38781 FvH4_6g40340 FvH4_7g11221 FvH4_7g23352 FvH4_7g23352 FvH4_7g31212 FvH4_7g32172 FvH4_7g32173 FvH4_7g33701
malus_domestica MD03G1006900.v1.1 MD04G1039100.v1.1 MD04G1239100.v1.1 MD05G1048700.v1.1 MD08G1001800.v1.1 MD09G1165800.v1.1 MD11G1065200.v1.1 MD11G1138200.v1.1 MD14G1033300.v1.1 MD14G1173900.v1.1 MD15G1218200.v1.1 MD16G1034000.v1.1
prunus_persica Prupe.1G219500_v2.0.a1 Prupe.2G169400_v2.0.a1 Prupe.4G109700_v2.0.a1 Prupe.7G022000_v2.0.a1
pyrus_communis pycom01g02000 pycom02g13350 pycom03g01010 pycom04g05000 pycom04g06100 pycom05g05580 pycom05g09950 pycom05g13280 pycom05g26610 pycom06g05940 pycom06g07760 pycom07g06120 pycom07g24780 pycom08g08820 pycom09g03600 pycom09g07200 pycom10g01280 pycom10g06730 pycom10g08410 pycom10g25520 pycom11g00470 pycom11g05250 pycom11g25180 pycom12g08050 pycom13g14760 pycom13g28170 pycom15g14310 pycom15g19880 pycom15g24230 pycom15g33640 pycom16g02150 pycom16g16240 pycom16g20050 pycom16g21090 pycom17g06100
rosa_chinensis RchiOBHm_Chr1g0322161 RchiOBHm_Chr1g0326341 RchiOBHm_Chr1g0357701 RchiOBHm_Chr1g0379861 RchiOBHm_Chr1g0383421 RchiOBHm_Chr2g0093981 RchiOBHm_Chr2g0139051 RchiOBHm_Chr2g0145501 RchiOBHm_Chr3g0450971 RchiOBHm_Chr3g0451441 RchiOBHm_Chr3g0457411 RchiOBHm_Chr4g0436261 RchiOBHm_Chr5g0051431 RchiOBHm_Chr5g0064031 RchiOBHm_Chr5g0073141 RchiOBHm_Chr5g0080061 RchiOBHm_Chr7g0200561 RchiOBHm_Chr7g0235911
rosa_laevigata RLG00000000145 RLG00000000429 RLG00000020339 RLG00000035212
rosa_multiflora Rmu_co7977988.1_g000001 Rmu_co8037866.1_g000001 Rmu_co8243895.1_g000001 Rmu_co8363787.1_g000001 Rmu_co8381003.1_g000001 Rmu_sc0000263.1_g000006 Rmu_sc0000349.1_g000002 Rmu_sc0000455.1_g000031 Rmu_sc0000936.1_g000022 Rmu_sc0001035.1_g000023 Rmu_sc0001169.1_g000019 Rmu_sc0001250.1_g000026 Rmu_sc0002200.1_g000051 Rmu_sc0002230.1_g000027 Rmu_sc0002591.1_g000039 Rmu_sc0003182.1_g000003 Rmu_sc0003441.1_g000068 Rmu_sc0003722.1_g000018 Rmu_sc0003764.1_g000007 Rmu_sc0006014.1_g000016 Rmu_sc0012582.1_g000002 Rmu_sc0013519.1_g000002 Rmu_sc0014550.1_g000005 Rmu_sc0014857.1_g000007 Rmu_sc0019855.1_g000001 Rmu_sc0030839.1_g000001 Rmu_sc0031308.1_g000001
rosa_roxburghii Rroxscaffold_1G00011290 Rroxscaffold_1G00041340 Rroxscaffold_1G00053780 Rroxscaffold_1G00059130 Rroxscaffold_1G00061580 Rroxscaffold_2G00080940 Rroxscaffold_2G00109540 Rroxscaffold_3G00228400 Rroxscaffold_3G00237710 Rroxscaffold_4G00285210 Rroxscaffold_4G00299600 Rroxscaffold_4G00324940 Rroxscaffold_4G00330580 Rroxscaffold_5G00333000 Rroxscaffold_5G00347920 Rroxscaffold_5G00375310 Rroxscaffold_6G00394760 Rroxscaffold_6G00406260 Rroxscaffold_7G00165690 Rroxscaffold_7G00187680
rosa_rugosa Rorug01G0050200 Rorug02G0273800 Rorug06G0490600 Rorug06G0490600 Rorug06G0490700
rosa_samantha Rh1AG348400 Rh5AG222600 Rh6DG000500 Rh6DG194500 Rh7BG452700
rosa_wichuraiana Rw0G003060 Rw0G010530 Rw0G012970 Rw0G022560 Rw0G023390 Rw1G001270 Rw1G001530 Rw1G006070 Rw1G008210 Rw1G022090 Rw1G023320 Rw2G003790 Rw2G004140 Rw2G005280 Rw2G006460 Rw2G019620 Rw2G019840 Rw2G022530 Rw2G023280 Rw2G024990 Rw2G042380 Rw2G051390 Rw3G001640 Rw3G016720 Rw3G017100 Rw3G020890 Rw3G020900 Rw3G021100 Rw4G004820 Rw4G014950 Rw4G030920 Rw4G031400 Rw5G008500 Rw5G017950 Rw5G020170 Rw5G030160 Rw5G033050 Rw5G034640 Rw5G043920 Rw6G005060 Rw6G005540 Rw6G006720 Rw6G008460 Rw6G008670 Rw6G014780 Rw6G019100 Rw6G019350 Rw6G026310 Rw7G016810 Rw7G019180 Rw7G022890 Rw7G025880 Rw7G026390 Rw7G028340 Rw7G034850 Rw7G035170 Rw7G035420 Rw7G037990 Rw7G041560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 101
AccIII TCCGGA 1 cut(s) 280
AciI CCGC 1 cut(s) 610
AclWI GGATC 3 cut(s) 269, 342, 1135
AcsI RAATTY 1 cut(s) 1032
AcuI CTGAAG 1 cut(s) 1059
AfaI GTAC 2 cut(s) 708, 766
AfeI AGCGCT 1 cut(s) 347
AfiI CCNNNNNNNGG 1 cut(s) 101
AgsI TTSAA 3 cut(s) 732, 741, 958
AjnI CCWGG 2 cut(s) 801, 1123
AluBI AGCT 5 cut(s) 29, 163, 445, 1043, 1057
AluI AGCT 5 cut(s) 29, 163, 445, 1043, 1057
Alw21I GWGCWC 1 cut(s) 508
Alw26I GTCTC 4 cut(s) 91, 237, 674, 1068
AlwI GGATC 3 cut(s) 269, 342, 1135
Ama87I CYCGRG 1 cut(s) 570
Aor13HI TCCGGA 1 cut(s) 280
Aor51HI AGCGCT 1 cut(s) 347
AoxI GGCC 2 cut(s) 719, 836
ApeKI GCWGC 3 cut(s) 695, 1054, 1109
ApoI RAATTY 1 cut(s) 1032
Asp700I GAANNNNTTC 1 cut(s) 953
AspLEI GCGC 1 cut(s) 348
AspS9I GGNCC 1 cut(s) 720
AsuC2I CCSGG 1 cut(s) 909
AsuHPI GGTGA 4 cut(s) 12, 395, 905, 1033
AsuII TTCGAA 1 cut(s) 378
AvaI CYCGRG 1 cut(s) 570
BarI GAAGNNNNNNTAC 2 cut(s) 1032, 1064
BauI CACGAG 1 cut(s) 318
Bbv12I GWGCWC 1 cut(s) 508
BbvCI CCTCAGC 1 cut(s) 196
BbvI GCAGC 3 cut(s) 682, 1066, 1121
BccI CCATC 2 cut(s) 856, 1076
BciT130I CCWGG 2 cut(s) 803, 1125
BciVI GTATCC 1 cut(s) 219
BcnI CCSGG 1 cut(s) 909
BcoDI GTCTC 4 cut(s) 91, 237, 674, 1068
BfaI CTAG 1 cut(s) 1131
BfoI RGCGCY 1 cut(s) 349
BfuI GTATCC 1 cut(s) 219
BisI GCNGC 3 cut(s) 696, 1055, 1110
BlsI GCNGC 3 cut(s) 697, 1056, 1111
Bme1390I CCNGG 3 cut(s) 803, 909, 1125
BmeT110I CYCGRG 1 cut(s) 570
BmgT120I GGNCC 1 cut(s) 720
BmrFI CCNGG 3 cut(s) 803, 909, 1125
BmsI GCATC 4 cut(s) 227, 381, 472, 519
BoxI GACNNNNGTC 1 cut(s) 810
BplI GAGNNNNNCTC 4 cut(s) 335, 367, 671, 703
Bpu10I CCTNAGC 2 cut(s) 196, 817
Bpu14I TTCGAA 1 cut(s) 378
BpuEI CTTGAG 3 cut(s) 673, 1055, 1083
BpuMI CCSGG 1 cut(s) 909
BsaI GGTCTC 3 cut(s) 91, 237, 674
BsaJI CCNNGG 1 cut(s) 699
BsaWI WCCGGW 1 cut(s) 280
Bsc4I CCNNNNNNNGG 1 cut(s) 101
Bse118I RCCGGY 1 cut(s) 405
Bse3DI GCAATG 1 cut(s) 247
BseAI TCCGGA 1 cut(s) 280
BseBI CCWGG 2 cut(s) 803, 1125
BseDI CCNNGG 1 cut(s) 699
BseGI GGATG 1 cut(s) 466
BseLI CCNNNNNNNGG 1 cut(s) 101
BseMI GCAATG 1 cut(s) 247
BseMII CTCAG 3 cut(s) 116, 210, 978
BseRI GAGGAG 2 cut(s) 106, 357
BseXI GCAGC 3 cut(s) 682, 1066, 1121
BsgI GTGCAG 1 cut(s) 829
BshFI GGCC 2 cut(s) 721, 838
BsiHKAI GWGCWC 1 cut(s) 508
BsiHKCI CYCGRG 1 cut(s) 570
BsiSI CCGG 3 cut(s) 281, 406, 908
BslI CCNNNNNNNGG 1 cut(s) 101
BsmAI GTCTC 4 cut(s) 91, 237, 674, 1068
BsmI GAATGC 1 cut(s) 967
BsnI GGCC 2 cut(s) 721, 838
Bso31I GGTCTC 3 cut(s) 91, 237, 674
BsoBI CYCGRG 1 cut(s) 570
Bsp119I TTCGAA 1 cut(s) 378
Bsp1286I GDGCHC 1 cut(s) 508
Bsp13I TCCGGA 1 cut(s) 280
Bsp143I GATC 5 cut(s) 261, 334, 514, 760, 1127
Bsp19I CCATGG 1 cut(s) 699
BspACI CCGC 1 cut(s) 610
BspANI GGCC 2 cut(s) 721, 838
BspCNI CTCAG 3 cut(s) 117, 209, 979
BspEI TCCGGA 1 cut(s) 280
BspPI GGATC 3 cut(s) 269, 342, 1135
BspT104I TTCGAA 1 cut(s) 378
BspTNI GGTCTC 3 cut(s) 91, 237, 674
BsrDI GCAATG 1 cut(s) 247
BsrFI RCCGGY 1 cut(s) 405
BssAI RCCGGY 1 cut(s) 405
BssECI CCNNGG 1 cut(s) 699
BssMI GATC 5 cut(s) 261, 334, 514, 760, 1127
BssSI CACGAG 1 cut(s) 318
BssT1I CCWWGG 1 cut(s) 699
Bst2BI CACGAG 1 cut(s) 318
Bst2UI CCWGG 2 cut(s) 803, 1125
Bst4CI ACNGT 2 cut(s) 296, 953
Bst6I CTCTTC 1 cut(s) 1071
BstBI TTCGAA 1 cut(s) 378
BstDEI CTNAG 5 cut(s) 125, 196, 656, 817, 987
BstDSI CCRYGG 1 cut(s) 699
BstEII GGTNACC 1 cut(s) 911
BstF5I GGATG 1 cut(s) 466
BstH2I RGCGCY 1 cut(s) 349
BstHHI GCGC 1 cut(s) 348
BstKTI GATC 5 cut(s) 264, 337, 517, 763, 1130
BstMAI GTCTC 4 cut(s) 91, 237, 674, 1068
BstMBI GATC 5 cut(s) 261, 334, 514, 760, 1127
BstMWI GCNNNNNNNGC 5 cut(s) 149, 668, 701, 971, 1109
BstNI CCWGG 2 cut(s) 803, 1125
BstNSI RCATGY 1 cut(s) 790
BstPAI GACNNNNGTC 1 cut(s) 810
BstPI GGTNACC 1 cut(s) 911
BstSCI CCNGG 3 cut(s) 801, 907, 1123
BstV1I GCAGC 3 cut(s) 682, 1066, 1121
BstX2I RGATCY 2 cut(s) 334, 1127
BstYI RGATCY 2 cut(s) 334, 1127
BsuI GTATCC 1 cut(s) 219
BsuRI GGCC 2 cut(s) 721, 838
BtgI CCRYGG 1 cut(s) 699
BtsCI GGATG 1 cut(s) 466
BtsI GCAGTG 3 cut(s) 312, 561, 841
BtsIMutI CAGTG 4 cut(s) 301, 312, 561, 841
CfoI GCGC 1 cut(s) 348
Cfr10I RCCGGY 1 cut(s) 405
Cfr13I GGNCC 1 cut(s) 720
CseI GACGC 2 cut(s) 474, 800
Csp6I GTAC 2 cut(s) 707, 765
CviAII CATG 6 cut(s) 120, 133, 498, 700, 787, 968
CviQI GTAC 2 cut(s) 707, 765
DdeI CTNAG 5 cut(s) 125, 196, 656, 817, 987
DpnI GATC 5 cut(s) 263, 336, 516, 762, 1129
DpnII GATC 5 cut(s) 261, 334, 514, 760, 1127
Eam1104I CTCTTC 1 cut(s) 1071
EarI CTCTTC 1 cut(s) 1071
EciI GGCGGA 1 cut(s) 599
Eco130I CCWWGG 1 cut(s) 699
Eco147I AGGCCT 1 cut(s) 838
Eco31I GGTCTC 3 cut(s) 91, 237, 674
Eco32I GATATC 1 cut(s) 902
Eco47III AGCGCT 1 cut(s) 347
Eco57I CTGAAG 1 cut(s) 1059
Eco88I CYCGRG 1 cut(s) 570
Eco91I GGTNACC 1 cut(s) 911
EcoO65I GGTNACC 1 cut(s) 911
EcoRII CCWGG 2 cut(s) 801, 1123
EcoRV GATATC 1 cut(s) 902
EcoT14I CCWWGG 1 cut(s) 699
ErhI CCWWGG 1 cut(s) 699
FaeI CATG 6 cut(s) 123, 136, 501, 703, 790, 971
FalI AAGNNNNNCTT 4 cut(s) 152, 184, 800, 832
FatI CATG 6 cut(s) 119, 132, 497, 699, 786, 967
Fnu4HI GCNGC 3 cut(s) 696, 1055, 1110
FokI GGATG 1 cut(s) 473
Fsp4HI GCNGC 3 cut(s) 696, 1055, 1110
FspBI CTAG 1 cut(s) 1131
GlaI GCGC 1 cut(s) 347
GluI GCNGC 3 cut(s) 696, 1055, 1110
HaeII RGCGCY 1 cut(s) 349
HaeIII GGCC 2 cut(s) 721, 838
HapII CCGG 3 cut(s) 281, 406, 908
HgaI GACGC 2 cut(s) 474, 800
HhaI GCGC 1 cut(s) 348
Hin1II CATG 6 cut(s) 123, 136, 501, 703, 790, 971
Hin6I GCGC 1 cut(s) 346
HinP1I GCGC 1 cut(s) 346
HindIII AAGCTT 1 cut(s) 161
HinfI GANTC 4 cut(s) 17, 250, 554, 592
HpaII CCGG 3 cut(s) 281, 406, 908
HphI GGTGA 4 cut(s) 12, 395, 905, 1033
Hpy188I TCNGA 6 cut(s) 16, 64, 292, 830, 988, 1039
Hpy188III TCNNGA 7 cut(s) 234, 281, 320, 341, 635, 958, 1131
Hpy99I CGWCG 2 cut(s) 795, 816
HpyAV CCTTC 5 cut(s) 55, 62, 612, 828, 1001
HpyCH4III ACNGT 2 cut(s) 296, 953
HpyCH4IV ACGT 1 cut(s) 793
HpyCH4V TGCA 4 cut(s) 240, 532, 846, 1109
HpyF10VI GCNNNNNNNGC 5 cut(s) 149, 668, 701, 971, 1109
HpyF3I CTNAG 5 cut(s) 125, 196, 656, 817, 987
HpySE526I ACGT 1 cut(s) 793
Hsp92II CATG 6 cut(s) 123, 136, 501, 703, 790, 971
HspAI GCGC 1 cut(s) 346
Kpn2I TCCGGA 1 cut(s) 280
Kzo9I GATC 5 cut(s) 261, 334, 514, 760, 1127
LmnI GCTCC 2 cut(s) 370, 503
Lsp1109I GCAGC 3 cut(s) 682, 1066, 1121
LweI GCATC 4 cut(s) 227, 381, 472, 519
MaeI CTAG 1 cut(s) 1131
MaeII ACGT 1 cut(s) 793
MaeIII GTNAC 3 cut(s) 911, 1021, 1114
MalI GATC 5 cut(s) 263, 336, 516, 762, 1129
MboI GATC 5 cut(s) 261, 334, 514, 760, 1127
MboII GAAGA 6 cut(s) 329, 367, 650, 765, 1058, 1154
MfeI CAATTG 1 cut(s) 416
MflI RGATCY 2 cut(s) 334, 1127
MhlI GDGCHC 1 cut(s) 508
MluCI AATT 6 cut(s) 109, 416, 727, 747, 1032, 1092
MroI TCCGGA 1 cut(s) 280
MroXI GAANNNNTTC 1 cut(s) 953
MseI TTAA 3 cut(s) 267, 587, 995
MspI CCGG 3 cut(s) 281, 406, 908
MspR9I CCNGG 3 cut(s) 803, 909, 1125
MunI CAATTG 1 cut(s) 416
Mva1269I GAATGC 1 cut(s) 967
MvaI CCWGG 2 cut(s) 803, 1125
MwoI GCNNNNNNNGC 5 cut(s) 149, 668, 701, 971, 1109
NciI CCSGG 1 cut(s) 909
NcoI CCATGG 1 cut(s) 699
NdeII GATC 5 cut(s) 261, 334, 514, 760, 1127
NlaIII CATG 6 cut(s) 123, 136, 501, 703, 790, 971
NmuCI GTSAC 2 cut(s) 911, 1021
NspI RCATGY 1 cut(s) 790
NspV TTCGAA 1 cut(s) 378
PaeR7I CTCGAG 1 cut(s) 570
PceI AGGCCT 1 cut(s) 838
PctI GAATGC 1 cut(s) 967
PdmI GAANNNNTTC 1 cut(s) 953
PfeI GAWTC 4 cut(s) 17, 250, 554, 592
PflFI GACNNNGTC 2 cut(s) 229, 296
PflMI CCANNNNNTGG 1 cut(s) 101
PkrI GCNGC 3 cut(s) 697, 1056, 1111
PshAI GACNNNNGTC 1 cut(s) 810
Psp6I CCWGG 2 cut(s) 801, 1123
PspEI GGTNACC 1 cut(s) 911
PspGI CCWGG 2 cut(s) 801, 1123
PspPI GGNCC 1 cut(s) 720
PspXI VCTCGAGB 1 cut(s) 570
PsrI GAACNNNNNNTAC 2 cut(s) 748, 780
PsuI RGATCY 2 cut(s) 334, 1127
PsyI GACNNNGTC 2 cut(s) 229, 296
RsaI GTAC 2 cut(s) 708, 766
RsaNI GTAC 2 cut(s) 707, 765
SaqAI TTAA 3 cut(s) 267, 587, 995
SatI GCNGC 3 cut(s) 696, 1055, 1110
Sau3AI GATC 5 cut(s) 261, 334, 514, 760, 1127
Sau96I GGNCC 1 cut(s) 720
ScrFI CCNGG 3 cut(s) 803, 909, 1125
SduI GDGCHC 1 cut(s) 508
SfaNI GCATC 4 cut(s) 227, 381, 472, 519
Sfr274I CTCGAG 1 cut(s) 570
SfuI TTCGAA 1 cut(s) 378
SlaI CTCGAG 1 cut(s) 570
SmlI CTYRAG 4 cut(s) 570, 688, 1070, 1098
SmoI CTYRAG 4 cut(s) 570, 688, 1070, 1098
Sse9I AATT 6 cut(s) 109, 416, 727, 747, 1032, 1092
SseBI AGGCCT 1 cut(s) 838
SsiI CCGC 1 cut(s) 610
SspMI CTAG 1 cut(s) 1131
StuI AGGCCT 1 cut(s) 838
StyD4I CCNGG 3 cut(s) 801, 907, 1123
StyI CCWWGG 1 cut(s) 699
TaaI ACNGT 2 cut(s) 296, 953
TaiI ACGT 1 cut(s) 796
TaqI TCGA 6 cut(s) 235, 378, 428, 517, 571, 947
TasI AATT 6 cut(s) 109, 416, 727, 747, 1032, 1092
TfiI GAWTC 4 cut(s) 17, 250, 554, 592
Tru1I TTAA 3 cut(s) 267, 587, 995
Tru9I TTAA 3 cut(s) 267, 587, 995
TscAI CASTG 4 cut(s) 301, 319, 568, 848
TseFI GTSAC 2 cut(s) 911, 1021
TseI GCWGC 3 cut(s) 695, 1054, 1109
Tsp45I GTSAC 2 cut(s) 911, 1021
TspDTI ATGAA 6 cut(s) 44, 242, 486, 567, 605, 1020
TspGWI ACGGA 2 cut(s) 595, 912
TspRI CASTG 4 cut(s) 301, 319, 568, 848
Tth111I GACNNNGTC 2 cut(s) 229, 296
Van91I CCANNNNNTGG 1 cut(s) 101
XapI RAATTY 1 cut(s) 1032
XbaI TCTAGA 1 cut(s) 1130
XceI RCATGY 1 cut(s) 790
XhoI CTCGAG 1 cut(s) 570
XmnI GAANNNNTTC 1 cut(s) 953
XspI CTAG 1 cut(s) 1131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.