RchiOBHm_Chr5g0080061

Pfam:UBN2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000106
Physical Location & Seq
Forward (+)
85885705 .. 85887377
1673 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35440

Sequence Viewer

Length: 1608 bp
ATGTCTACCTCCACCTCCAACCAAACATCAATCCCTCTTCCCATCTTCAAGGGAGAAAACTATGATTTTTGGAGTATCAAGATGAGAACCTTCTTTATGTCTCAAGATCTATGGGACATAGTAGAGAAAGGATTCTCGACTCCAGAAAATCCGACGGTGGAGCAATTACGGCAAGAAAAGAAAGAAAAATTAAGAGATGCTAGTGCTCTCTTCGCCATTCAACAAGCAGTGGACGATACAAATTTTTCAAGAATCATGGGAGCTACCACATCAAAAGAAGCTTGGGATCTACTAAAGGAGGAGTTTCAAGGGACGACAAAGGTACGTTCCGTTAAACTACAAACAATGAGGAGAGAGTTAGAAAATTTGAAAATGAAAGATTCTGAGATCGTAAAAGATTACTATTCCCGGTTAAAGGAAATAGTAAATCAATTAAGAGCCTATGGTGAAAATATTAGTGAGACTAGAGTAGTTGAAAAAATACTCATTAGCCTCACTGAAAAATATGACCCAATAGTTACTGCCATCGAAAATTCTAAAGACATGACAACTCTTTCGGTGACAGAACTAATAGGCTCTTTAGAAGCTTATGAGAAAAGATTGAGTAGTCGGAATGAAAGTCCTATAGAAAGTGCATTCCGATCTAAACTCAATATTCGATCTCAGAAAAATGAAAAAGAAAAGAAGTTTGAAGAATTTTCTAGAGGAGGAGATAGACCCAAATATTGGGCAAATAAAAAAGATATAAAGGAGAAAAGAAATTATTCTCCATGTGGAATCTGCCACAAAAATAATCATCAAGAAAAAGATTGTTGGTTTCGGGGAAAACCAAAATGTCGAAACTGCAACAAATTTGGTCATATTGAGGAAAATTGTTTCCTCAAGAAAAATCACCGAGCAGATTTTTCAGAAGAAAATGAGCAAGATGAGCAGCTCTTCTATGCATGTCACTCGGCGATTGAAGAGAGAAATAAGAAGTGGTACGTGGATAGCGGCTGCAGCAATCATATGTCTGGAGATAAAACCATTTTCTCCAAACTTGATACTTCACAAAAGTCTCAAGTGAAACTAGGAAATGGAGAAATGGTGAAAACTAAAGGCAAAGGTACGATTTCCATCCCGACTAATTTAGGAACTAAAAAGATTAATGATGTTCTATTAGTTCCTAGCCTGGAGCATAATCTCCTAAGTGTCGGACAAATGCTGGAAAATGGTTATGCTATATTATTTCATGGAGACTTCTGCAAAATATTTGACAAGAAAAGAAGGTTGATATTCAAAATAAGGATGAAAAATAGAAATTTCCCCATCCAATGGCAACAAATGGCCATGAAAGCAGAAGTCAAGAAGAAAAATATTTGCCTAGTGAAAAAGCAGCCGAGGACTCTACCACGTCAAGCAAATAAAGAAAGGAGTTCAAATCCTCCACAACCAAAAAGTTGTGAAGTTGCGATGAAGAAGAAAGCCAGAGAAAGGCTATGGAAGAAGAAAGCTGAAGGAAGGCCATGGAAAAAGAAAACAAGAGTGAGAACACCTTCGCCAAGGCACTTCCAAGATCAAGACTTGAATTACTACGAGATTGCTCGGAATATCATCAATGTGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4219 Retrotran_gag_2 zf-CCHC

Protein Analysis

535

Amino Acids

62.54

Weight (kDa)

9.6

Isoelectric Point (pI)

51.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 28 - 205 1.8e-37 gag-polypeptide of LTR copia-type
Pol_BBD PF22936 327 - 406 7e-27 Pol polyprotein, beta-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20980 AT3G21000
fragaria_vesca FvH4_1g15931 FvH4_1g15931 FvH4_1g18381 FvH4_1g18382 FvH4_1g22571 FvH4_1g24950 FvH4_1g29372 FvH4_2g03582 FvH4_2g09851 FvH4_2g13112 FvH4_2g20843 FvH4_2g22701 FvH4_2g22702 FvH4_2g23403 FvH4_2g40201 FvH4_3g03542 FvH4_3g03543 FvH4_3g04761 FvH4_3g10464 FvH4_3g12741 FvH4_3g15781 FvH4_3g30981 FvH4_4g00985 FvH4_4g07035 FvH4_4g08192 FvH4_4g08211 FvH4_4g08553 FvH4_4g14242 FvH4_4g14243 FvH4_4g14641 FvH4_4g14843 FvH4_4g14844 FvH4_4g15061 FvH4_4g16281 FvH4_4g19152 FvH4_4g26451 FvH4_5g06442 FvH4_5g22521 FvH4_5g24301 FvH4_5g38641 FvH4_6g02393 FvH4_6g12782 FvH4_6g13871 FvH4_6g19391 FvH4_6g20105 FvH4_6g21292 FvH4_6g23581 FvH4_6g29153 FvH4_6g29691 FvH4_6g30871 FvH4_6g33351 FvH4_6g37042 FvH4_6g38781 FvH4_6g40340 FvH4_7g11221 FvH4_7g23352 FvH4_7g23352 FvH4_7g31212 FvH4_7g32172 FvH4_7g32173 FvH4_7g33701
malus_domestica MD03G1006900.v1.1 MD04G1039100.v1.1 MD04G1239100.v1.1 MD05G1048700.v1.1 MD08G1001800.v1.1 MD09G1165800.v1.1 MD11G1065200.v1.1 MD11G1138200.v1.1 MD14G1033300.v1.1 MD14G1173900.v1.1 MD15G1218200.v1.1 MD16G1034000.v1.1
prunus_persica Prupe.1G219500_v2.0.a1 Prupe.2G169400_v2.0.a1 Prupe.4G109700_v2.0.a1 Prupe.7G022000_v2.0.a1
pyrus_communis pycom01g02000 pycom02g13350 pycom03g01010 pycom04g05000 pycom04g06100 pycom05g05580 pycom05g09950 pycom05g13280 pycom05g26610 pycom06g05940 pycom06g07760 pycom07g06120 pycom07g24780 pycom08g08820 pycom09g03600 pycom09g07200 pycom10g01280 pycom10g06730 pycom10g08410 pycom10g25520 pycom11g00470 pycom11g05250 pycom11g25180 pycom12g08050 pycom13g14760 pycom13g28170 pycom15g14310 pycom15g19880 pycom15g24230 pycom15g33640 pycom16g02150 pycom16g16240 pycom16g20050 pycom16g21090 pycom17g06100
rosa_chinensis RchiOBHm_Chr1g0322161 RchiOBHm_Chr1g0326341 RchiOBHm_Chr1g0357701 RchiOBHm_Chr1g0379861 RchiOBHm_Chr1g0383421 RchiOBHm_Chr2g0093981 RchiOBHm_Chr2g0139051 RchiOBHm_Chr2g0145501 RchiOBHm_Chr3g0450971 RchiOBHm_Chr3g0451441 RchiOBHm_Chr3g0457411 RchiOBHm_Chr4g0436261 RchiOBHm_Chr5g0051431 RchiOBHm_Chr5g0064031 RchiOBHm_Chr5g0073141 RchiOBHm_Chr5g0080061 RchiOBHm_Chr7g0200561 RchiOBHm_Chr7g0235911
rosa_laevigata RLG00000000145 RLG00000000429 RLG00000020339 RLG00000035212
rosa_multiflora Rmu_co7977988.1_g000001 Rmu_co8037866.1_g000001 Rmu_co8243895.1_g000001 Rmu_co8363787.1_g000001 Rmu_co8381003.1_g000001 Rmu_sc0000263.1_g000006 Rmu_sc0000349.1_g000002 Rmu_sc0000455.1_g000031 Rmu_sc0000936.1_g000022 Rmu_sc0001035.1_g000023 Rmu_sc0001169.1_g000019 Rmu_sc0001250.1_g000026 Rmu_sc0002200.1_g000051 Rmu_sc0002230.1_g000027 Rmu_sc0002591.1_g000039 Rmu_sc0003182.1_g000003 Rmu_sc0003441.1_g000068 Rmu_sc0003722.1_g000018 Rmu_sc0003764.1_g000007 Rmu_sc0006014.1_g000016 Rmu_sc0012582.1_g000002 Rmu_sc0013519.1_g000002 Rmu_sc0014550.1_g000005 Rmu_sc0014857.1_g000007 Rmu_sc0019855.1_g000001 Rmu_sc0030839.1_g000001 Rmu_sc0031308.1_g000001
rosa_roxburghii Rroxscaffold_1G00011290 Rroxscaffold_1G00041340 Rroxscaffold_1G00053780 Rroxscaffold_1G00059130 Rroxscaffold_1G00061580 Rroxscaffold_2G00080940 Rroxscaffold_2G00109540 Rroxscaffold_3G00228400 Rroxscaffold_3G00237710 Rroxscaffold_4G00285210 Rroxscaffold_4G00299600 Rroxscaffold_4G00324940 Rroxscaffold_4G00330580 Rroxscaffold_5G00333000 Rroxscaffold_5G00347920 Rroxscaffold_5G00375310 Rroxscaffold_6G00394760 Rroxscaffold_6G00406260 Rroxscaffold_7G00165690 Rroxscaffold_7G00187680
rosa_rugosa Rorug01G0050200 Rorug02G0273800 Rorug06G0490600 Rorug06G0490600 Rorug06G0490700
rosa_samantha Rh1AG348400 Rh5AG222600 Rh6DG000500 Rh6DG194500 Rh7BG452700
rosa_wichuraiana Rw0G003060 Rw0G010530 Rw0G012970 Rw0G022560 Rw0G023390 Rw1G001270 Rw1G001530 Rw1G006070 Rw1G008210 Rw1G022090 Rw1G023320 Rw2G003790 Rw2G004140 Rw2G005280 Rw2G006460 Rw2G019620 Rw2G019840 Rw2G022530 Rw2G023280 Rw2G024990 Rw2G042380 Rw2G051390 Rw3G001640 Rw3G016720 Rw3G017100 Rw3G020890 Rw3G020900 Rw3G021100 Rw4G004820 Rw4G014950 Rw4G030920 Rw4G031400 Rw5G008500 Rw5G017950 Rw5G020170 Rw5G030160 Rw5G033050 Rw5G034640 Rw5G043920 Rw6G005060 Rw6G005540 Rw6G006720 Rw6G008460 Rw6G008670 Rw6G014780 Rw6G019100 Rw6G019350 Rw6G026310 Rw7G016810 Rw7G019180 Rw7G022890 Rw7G025880 Rw7G026390 Rw7G028340 Rw7G034850 Rw7G035170 Rw7G035420 Rw7G037990 Rw7G041560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 726, 1314
AccI GTMKAC 1 cut(s) 5
AciI CCGC 1 cut(s) 993
AclWI GGATC 1 cut(s) 294
AcoI YGGCCR 1 cut(s) 1326
AcsI RAATTY 6 cut(s) 241, 364, 532, 695, 851, 1300
AcuI CTGAAG 1 cut(s) 1515
AfaI GTAC 3 cut(s) 324, 983, 1108
AfiI CCNNNNNNNGG 4 cut(s) 415, 726, 1314, 1473
AjiI CACGTC 1 cut(s) 1394
AjnI CCWGG 1 cut(s) 1170
AluBI AGCT 5 cut(s) 263, 281, 587, 934, 1493
AluI AGCT 5 cut(s) 263, 281, 587, 934, 1493
Alw21I GWGCWC 1 cut(s) 208
Alw26I GTCTC 4 cut(s) 105, 455, 1062, 1230
AlwI GGATC 1 cut(s) 294
AoxI GGCC 2 cut(s) 1326, 1502
ApeKI GCWGC 4 cut(s) 931, 996, 999, 1375
ApoI RAATTY 6 cut(s) 241, 364, 532, 695, 851, 1300
ArsI GACNNNNNNTTYG 2 cut(s) 538, 570
AseI ATTAAT 1 cut(s) 1146
Asp700I GAANNNNTTC 3 cut(s) 131, 763, 1534
AsuC2I CCSGG 1 cut(s) 409
AsuHPI GGTGA 4 cut(s) 458, 571, 884, 1099
BalI TGGCCA 1 cut(s) 1328
Bbv12I GWGCWC 1 cut(s) 208
BbvI GCAGC 4 cut(s) 943, 983, 1011, 1387
BccI CCATC 4 cut(s) 50, 533, 1124, 1316
BceAI ACGGC 1 cut(s) 185
BcgI CGANNNNNNTGC 2 cut(s) 933, 967
BciT130I CCWGG 1 cut(s) 1172
BcnI CCSGG 1 cut(s) 409
BcoDI GTCTC 4 cut(s) 105, 455, 1062, 1230
BfaI CTAG 6 cut(s) 201, 465, 702, 1070, 1167, 1364
BfmI CTRYAG 2 cut(s) 624, 997
BglII AGATCT 1 cut(s) 106
BisI GCNGC 5 cut(s) 932, 994, 997, 1000, 1376
BlsI GCNGC 5 cut(s) 933, 995, 998, 1001, 1377
Bme1390I CCNGG 2 cut(s) 409, 1172
BmgBI CACGTC 1 cut(s) 1394
BmrFI CCNGG 2 cut(s) 409, 1172
BmsI GCATC 1 cut(s) 187
BpmI CTGGAG 3 cut(s) 126, 1035, 1193
BpuEI CTTGAG 3 cut(s) 87, 866, 1044
BpuMI CCSGG 1 cut(s) 409
BsaAI YACGTR 1 cut(s) 985
BsaBI GATNNNNATC 1 cut(s) 1115
BsaJI CCNNGG 3 cut(s) 1379, 1505, 1541
BsaXI ACNNNNNCTCC 2 cut(s) 1071, 1101
Bsc4I CCNNNNNNNGG 4 cut(s) 415, 726, 1314, 1473
Bse8I GATNNNNATC 1 cut(s) 1115
BseBI CCWGG 1 cut(s) 1172
BseDI CCNNGG 3 cut(s) 1379, 1505, 1541
BseGI GGATG 3 cut(s) 1116, 1293, 1308
BseJI GATNNNNATC 1 cut(s) 1115
BseLI CCNNNNNNNGG 4 cut(s) 415, 726, 1314, 1473
BseMII CTCAG 2 cut(s) 375, 677
BseRI GAGGAG 4 cut(s) 314, 364, 720, 723
BseXI GCAGC 4 cut(s) 943, 983, 1011, 1387
BshFI GGCC 2 cut(s) 1328, 1504
BsiHKAI GWGCWC 1 cut(s) 208
BsiSI CCGG 1 cut(s) 409
BslFI GGGAC 2 cut(s) 128, 325
BslI CCNNNNNNNGG 4 cut(s) 415, 726, 1314, 1473
BsmAI GTCTC 4 cut(s) 105, 455, 1062, 1230
BsmFI GGGAC 2 cut(s) 128, 325
BsmI GAATGC 1 cut(s) 635
BsnI GGCC 2 cut(s) 1328, 1504
Bsp1286I GDGCHC 1 cut(s) 208
Bsp143I GATC 6 cut(s) 106, 286, 387, 641, 659, 1555
Bsp19I CCATGG 1 cut(s) 1505
BspACI CCGC 1 cut(s) 993
BspANI GGCC 2 cut(s) 1328, 1504
BspCNI CTCAG 2 cut(s) 376, 676
BspMAI CTGCAG 1 cut(s) 1001
BspPI GGATC 1 cut(s) 294
BspQI GCTCTTC 1 cut(s) 941
BssECI CCNNGG 3 cut(s) 1379, 1505, 1541
BssMI GATC 6 cut(s) 106, 286, 387, 641, 659, 1555
BssT1I CCWWGG 2 cut(s) 1505, 1541
Bst2UI CCWGG 1 cut(s) 1172
Bst4CI ACNGT 1 cut(s) 157
Bst6I CTCTTC 4 cut(s) 42, 215, 941, 957
BstBAI YACGTR 1 cut(s) 985
BstDEI CTNAG 3 cut(s) 384, 663, 1187
BstDSI CCRYGG 1 cut(s) 1505
BstF5I GGATG 3 cut(s) 1116, 1293, 1308
BstKTI GATC 6 cut(s) 109, 289, 390, 644, 662, 1558
BstMAI GTCTC 4 cut(s) 105, 455, 1062, 1230
BstMBI GATC 6 cut(s) 106, 286, 387, 641, 659, 1555
BstMWI GCNNNNNNNGC 5 cut(s) 169, 212, 928, 999, 1334
BstNI CCWGG 1 cut(s) 1172
BstNSI RCATGY 1 cut(s) 948
BstSCI CCNGG 2 cut(s) 407, 1170
BstSFI CTRYAG 2 cut(s) 624, 997
BstV1I GCAGC 4 cut(s) 943, 983, 1011, 1387
BstX2I RGATCY 2 cut(s) 106, 286
BstYI RGATCY 2 cut(s) 106, 286
BsuRI GGCC 2 cut(s) 1328, 1504
BtgI CCRYGG 1 cut(s) 1505
BtgZI GCGATG 1 cut(s) 1466
BtrI CACGTC 1 cut(s) 1394
BtsCI GGATG 3 cut(s) 1116, 1293, 1308
BtsI GCAGTG 1 cut(s) 234
BtsIMutI CAGTG 2 cut(s) 234, 495
Csp6I GTAC 3 cut(s) 323, 982, 1107
CviAII CATG 7 cut(s) 256, 544, 771, 945, 1232, 1330, 1506
CviQI GTAC 3 cut(s) 323, 982, 1107
DdeI CTNAG 3 cut(s) 384, 663, 1187
DpnI GATC 6 cut(s) 108, 288, 389, 643, 661, 1557
DpnII GATC 6 cut(s) 106, 286, 387, 641, 659, 1555
EaeI YGGCCR 1 cut(s) 1326
Eam1104I CTCTTC 4 cut(s) 42, 215, 941, 957
EarI CTCTTC 4 cut(s) 42, 215, 941, 957
Eco130I CCWWGG 2 cut(s) 1505, 1541
Eco57I CTGAAG 1 cut(s) 1515
EcoRII CCWGG 1 cut(s) 1170
EcoT14I CCWWGG 2 cut(s) 1505, 1541
EcoT22I ATGCAT 1 cut(s) 946
ErhI CCWWGG 2 cut(s) 1505, 1541
FaeI CATG 7 cut(s) 259, 547, 774, 948, 1235, 1333, 1509
FaqI GGGAC 2 cut(s) 128, 325
FatI CATG 7 cut(s) 255, 543, 770, 944, 1231, 1329, 1505
FauNDI CATATG 1 cut(s) 1008
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 5 cut(s) 932, 994, 997, 1000, 1376
FokI GGATG 3 cut(s) 1103, 1295, 1300
Fsp4HI GCNGC 5 cut(s) 932, 994, 997, 1000, 1376
FspBI CTAG 6 cut(s) 201, 465, 702, 1070, 1167, 1364
GluI GCNGC 5 cut(s) 932, 994, 997, 1000, 1376
GsuI CTGGAG 3 cut(s) 126, 1035, 1193
HaeIII GGCC 2 cut(s) 1328, 1504
HapII CCGG 1 cut(s) 409
Hin1II CATG 7 cut(s) 259, 547, 774, 948, 1235, 1333, 1509
HindIII AAGCTT 2 cut(s) 279, 585
HinfI GANTC 6 cut(s) 132, 139, 252, 380, 777, 1384
HpaII CCGG 1 cut(s) 409
HphI GGTGA 4 cut(s) 458, 571, 884, 1099
Hpy166II GTNNAC 2 cut(s) 6, 232
Hpy188I TCNGA 8 cut(s) 153, 385, 612, 641, 666, 910, 1196, 1587
Hpy8I GTNNAC 2 cut(s) 6, 232
Hpy99I CGWCG 1 cut(s) 157
HpyAV CCTTC 5 cut(s) 100, 1260, 1490, 1494, 1545
HpyCH4III ACNGT 1 cut(s) 157
HpyCH4IV ACGT 3 cut(s) 325, 984, 1393
HpyCH4V TGCA 6 cut(s) 635, 846, 944, 999, 1245, 1603
HpyF10VI GCNNNNNNNGC 5 cut(s) 169, 212, 928, 999, 1334
HpyF3I CTNAG 3 cut(s) 384, 663, 1187
HpySE526I ACGT 3 cut(s) 325, 984, 1393
Hsp92II CATG 7 cut(s) 259, 547, 774, 948, 1235, 1333, 1509
Kzo9I GATC 6 cut(s) 106, 286, 387, 641, 659, 1555
LguI GCTCTTC 1 cut(s) 941
LmnI GCTCC 3 cut(s) 160, 260, 1174
LpnPI CCDG 7 cut(s) 156, 422, 999, 1157, 1184, 1190, 1480
Lsp1109I GCAGC 4 cut(s) 943, 983, 1011, 1387
LweI GCATC 1 cut(s) 187
MaeI CTAG 6 cut(s) 201, 465, 702, 1070, 1167, 1364
MaeII ACGT 3 cut(s) 325, 984, 1393
MaeIII GTNAC 3 cut(s) 517, 559, 947
MalI GATC 6 cut(s) 108, 288, 389, 643, 661, 1557
MboI GATC 6 cut(s) 106, 286, 387, 641, 659, 1555
MflI RGATCY 2 cut(s) 106, 286
MhlI GDGCHC 1 cut(s) 208
MlsI TGGCCA 1 cut(s) 1328
MluNI TGGCCA 1 cut(s) 1328
MlyI GAGTC 2 cut(s) 133, 1378
MmeI TCCRAC 4 cut(s) 42, 176, 590, 1174
Mox20I TGGCCA 1 cut(s) 1328
Mph1103I ATGCAT 1 cut(s) 946
MroXI GAANNNNTTC 3 cut(s) 131, 763, 1534
MscI TGGCCA 1 cut(s) 1328
MseI TTAA 6 cut(s) 191, 333, 413, 434, 1146, 1606
MslI CAYNNNNRTG 1 cut(s) 1598
Msp20I TGGCCA 1 cut(s) 1328
MspI CCGG 1 cut(s) 409
MspR9I CCNGG 2 cut(s) 409, 1172
Mva1269I GAATGC 1 cut(s) 635
MvaI CCWGG 1 cut(s) 1172
MwoI GCNNNNNNNGC 5 cut(s) 169, 212, 928, 999, 1334
NciI CCSGG 1 cut(s) 409
NcoI CCATGG 1 cut(s) 1505
NdeI CATATG 1 cut(s) 1008
NdeII GATC 6 cut(s) 106, 286, 387, 641, 659, 1555
NlaIII CATG 7 cut(s) 259, 547, 774, 948, 1235, 1333, 1509
NmeAIII GCCGAG 2 cut(s) 932, 1404
NmuCI GTSAC 2 cut(s) 559, 947
NsiI ATGCAT 1 cut(s) 946
NspI RCATGY 1 cut(s) 948
PciSI GCTCTTC 1 cut(s) 941
PctI GAATGC 1 cut(s) 635
PdmI GAANNNNTTC 3 cut(s) 131, 763, 1534
PfeI GAWTC 4 cut(s) 132, 252, 380, 777
PflMI CCANNNNNTGG 2 cut(s) 726, 1314
PkrI GCNGC 5 cut(s) 933, 995, 998, 1001, 1377
PleI GAGTC 2 cut(s) 133, 1378
PpsI GAGTC 2 cut(s) 133, 1378
Ppu21I YACGTR 1 cut(s) 985
PshBI ATTAAT 1 cut(s) 1146
Psp6I CCWGG 1 cut(s) 1170
PspGI CCWGG 1 cut(s) 1170
PstI CTGCAG 1 cut(s) 1001
PsuI RGATCY 2 cut(s) 106, 286
RsaI GTAC 3 cut(s) 324, 983, 1108
RsaNI GTAC 3 cut(s) 323, 982, 1107
RseI CAYNNNNRTG 1 cut(s) 1598
SapI GCTCTTC 1 cut(s) 941
SaqAI TTAA 6 cut(s) 191, 333, 413, 434, 1146, 1606
SatI GCNGC 5 cut(s) 932, 994, 997, 1000, 1376
Sau3AI GATC 6 cut(s) 106, 286, 387, 641, 659, 1555
SchI GAGTC 2 cut(s) 133, 1378
ScrFI CCNGG 2 cut(s) 409, 1172
SduI GDGCHC 1 cut(s) 208
SfaNI GCATC 1 cut(s) 187
SfcI CTRYAG 2 cut(s) 624, 997
SmiMI CAYNNNNRTG 1 cut(s) 1598
SmlI CTYRAG 3 cut(s) 102, 881, 1059
SmoI CTYRAG 3 cut(s) 102, 881, 1059
SsiI CCGC 1 cut(s) 993
SspI AATATT 5 cut(s) 454, 655, 725, 1251, 1357
SspMI CTAG 6 cut(s) 201, 465, 702, 1070, 1167, 1364
StyD4I CCNGG 2 cut(s) 407, 1170
StyI CCWWGG 2 cut(s) 1505, 1541
TaaI ACNGT 1 cut(s) 157
TaiI ACGT 3 cut(s) 328, 987, 1396
TaqI TCGA 4 cut(s) 137, 528, 658, 838
TauI GCSGC 1 cut(s) 996
TfiI GAWTC 4 cut(s) 132, 252, 380, 777
Tru1I TTAA 6 cut(s) 191, 333, 413, 434, 1146, 1606
Tru9I TTAA 6 cut(s) 191, 333, 413, 434, 1146, 1606
TscAI CASTG 2 cut(s) 234, 502
TseFI GTSAC 2 cut(s) 559, 947
TseI GCWGC 4 cut(s) 931, 996, 999, 1375
Tsp45I GTSAC 2 cut(s) 559, 947
TspDTI ATGAA 7 cut(s) 389, 630, 687, 1220, 1304, 1346, 1469
TspGWI ACGGA 1 cut(s) 319
TspRI CASTG 2 cut(s) 234, 502
Van91I CCANNNNNTGG 2 cut(s) 726, 1314
VspI ATTAAT 1 cut(s) 1146
XapI RAATTY 6 cut(s) 241, 364, 532, 695, 851, 1300
XbaI TCTAGA 1 cut(s) 701
XceI RCATGY 1 cut(s) 948
XmiI GTMKAC 1 cut(s) 5
XmnI GAANNNNTTC 3 cut(s) 131, 763, 1534
XspI CTAG 6 cut(s) 201, 465, 702, 1070, 1167, 1364
Zsp2I ATGCAT 1 cut(s) 946
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.