FvH4_1g22571
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000106
Physical Location & Seq
Reverse (-)
14504904 .. 14505984
1081 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g22571.t1

Sequence Viewer

Length: 990 bp
ATGAGAAAAGTATCCTCACCAATTATTCTTTCATGTGGAATCATTGCACAACACACAACACCGGGTACACCAGACCAGAATGGGGTTACTGAACGTAGAAACCGTACATTGTTGAATATGGTTCGAAGCATGATTAGCAAGAGCAACTTGCCTATTTTCTTGTGGGGTGAAGCACTTAAGACTGCGAATTATATCTCCAATCGTGTTCCAAGCAAGGCTGTTGACAAAACACCTTTTGAAATTTGGAATAGTCGAAAACCAAGCCTTATTCATTTTCGTACTTGGGGATGTCCTGCAGAGGCCCGTCCTTACAATCCAGATGAAAAGAAGCTAGATTCCAAAACTATTACTTGCCATTTTATTGGCTATCCTGATAAGTCCAAAGACCTTATTTTGGAGGAAGAGGGTGAAGAAGTTGTTAGAAATCCAGCAGAAAATAGTACTCTAGCCATTTCTGTTGTAGTATACCCTCAGGTGCCTCAAGAACCCCATGTCCTTGATGACCAGATTGTTGATAATCCCATTAACTTTGAACAACAAGATCTTCCTCCTAATGAAGCAGCCATAGTACAACCCGAAGCTGCTCCAGAAGTTGTCCCATTGAGGAGGTCTGAAAGAGTTCGCAGGTTTGTAATTTCTGATGATTATGTGTCATTTATTCAAGAAGTAGAACCTGAAAACTTTTGTACATATCTTCAAGAAGTTGATTTTGATATTGGCGAAGACAATGATCCAGTCACATACAACCAAGCCAATAATAGTTCCCAATCAACCTTATGGACAGAAGCGATGCATGAACAGTTAGAGTCCATGAAAGACAATGAAGTGTGGGACCTAGTTGAACCAAACCTAGATGTCAAGCCAATTGGGTGCAAATGGGTGTTTAAAACGAAGAAAAACGCAGATGGGAGTATAGAAAGATATAGAATTAAATTCAGTGTACCCCATTGTGGTTTAGAGGTGACTTCATGTGAGTCCCTAAACTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 Retrotrans_gag zf-CCHC

Protein Analysis

330

Amino Acids

37.48

Weight (kDa)

4.95

Isoelectric Point (pI)

48.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20980 AT3G21000
fragaria_vesca FvH4_1g15931 FvH4_1g15931 FvH4_1g18381 FvH4_1g18382 FvH4_1g22571 FvH4_1g24950 FvH4_1g29372 FvH4_2g03582 FvH4_2g09851 FvH4_2g13112 FvH4_2g20843 FvH4_2g22701 FvH4_2g22702 FvH4_2g23403 FvH4_2g40201 FvH4_3g03542 FvH4_3g03543 FvH4_3g04761 FvH4_3g10464 FvH4_3g12741 FvH4_3g15781 FvH4_3g30981 FvH4_4g00985 FvH4_4g07035 FvH4_4g08192 FvH4_4g08211 FvH4_4g08553 FvH4_4g14242 FvH4_4g14243 FvH4_4g14641 FvH4_4g14843 FvH4_4g14844 FvH4_4g15061 FvH4_4g16281 FvH4_4g19152 FvH4_4g26451 FvH4_5g06442 FvH4_5g22521 FvH4_5g24301 FvH4_5g38641 FvH4_6g02393 FvH4_6g12782 FvH4_6g13871 FvH4_6g19391 FvH4_6g20105 FvH4_6g21292 FvH4_6g23581 FvH4_6g29153 FvH4_6g29691 FvH4_6g30871 FvH4_6g33351 FvH4_6g37042 FvH4_6g38781 FvH4_6g40340 FvH4_7g11221 FvH4_7g23352 FvH4_7g23352 FvH4_7g31212 FvH4_7g32172 FvH4_7g32173 FvH4_7g33701
malus_domestica MD03G1006900.v1.1 MD04G1039100.v1.1 MD04G1239100.v1.1 MD05G1048700.v1.1 MD08G1001800.v1.1 MD09G1165800.v1.1 MD11G1065200.v1.1 MD11G1138200.v1.1 MD14G1033300.v1.1 MD14G1173900.v1.1 MD15G1218200.v1.1 MD16G1034000.v1.1
prunus_persica Prupe.1G219500_v2.0.a1 Prupe.2G169400_v2.0.a1 Prupe.4G109700_v2.0.a1 Prupe.7G022000_v2.0.a1
pyrus_communis pycom01g02000 pycom02g13350 pycom03g01010 pycom04g05000 pycom04g06100 pycom05g05580 pycom05g09950 pycom05g13280 pycom05g26610 pycom06g05940 pycom06g07760 pycom07g06120 pycom07g24780 pycom08g08820 pycom09g03600 pycom09g07200 pycom10g01280 pycom10g06730 pycom10g08410 pycom10g25520 pycom11g00470 pycom11g05250 pycom11g25180 pycom12g08050 pycom13g14760 pycom13g28170 pycom15g14310 pycom15g19880 pycom15g24230 pycom15g33640 pycom16g02150 pycom16g16240 pycom16g20050 pycom16g21090 pycom17g06100
rosa_chinensis RchiOBHm_Chr1g0322161 RchiOBHm_Chr1g0326341 RchiOBHm_Chr1g0357701 RchiOBHm_Chr1g0379861 RchiOBHm_Chr1g0383421 RchiOBHm_Chr2g0093981 RchiOBHm_Chr2g0139051 RchiOBHm_Chr2g0145501 RchiOBHm_Chr3g0450971 RchiOBHm_Chr3g0451441 RchiOBHm_Chr3g0457411 RchiOBHm_Chr4g0436261 RchiOBHm_Chr5g0051431 RchiOBHm_Chr5g0064031 RchiOBHm_Chr5g0073141 RchiOBHm_Chr5g0080061 RchiOBHm_Chr7g0200561 RchiOBHm_Chr7g0235911
rosa_laevigata RLG00000000145 RLG00000000429 RLG00000020339 RLG00000035212
rosa_multiflora Rmu_co7977988.1_g000001 Rmu_co8037866.1_g000001 Rmu_co8243895.1_g000001 Rmu_co8363787.1_g000001 Rmu_co8381003.1_g000001 Rmu_sc0000263.1_g000006 Rmu_sc0000349.1_g000002 Rmu_sc0000455.1_g000031 Rmu_sc0000936.1_g000022 Rmu_sc0001035.1_g000023 Rmu_sc0001169.1_g000019 Rmu_sc0001250.1_g000026 Rmu_sc0002200.1_g000051 Rmu_sc0002230.1_g000027 Rmu_sc0002591.1_g000039 Rmu_sc0003182.1_g000003 Rmu_sc0003441.1_g000068 Rmu_sc0003722.1_g000018 Rmu_sc0003764.1_g000007 Rmu_sc0006014.1_g000016 Rmu_sc0012582.1_g000002 Rmu_sc0013519.1_g000002 Rmu_sc0014550.1_g000005 Rmu_sc0014857.1_g000007 Rmu_sc0019855.1_g000001 Rmu_sc0030839.1_g000001 Rmu_sc0031308.1_g000001
rosa_roxburghii Rroxscaffold_1G00011290 Rroxscaffold_1G00041340 Rroxscaffold_1G00053780 Rroxscaffold_1G00059130 Rroxscaffold_1G00061580 Rroxscaffold_2G00080940 Rroxscaffold_2G00109540 Rroxscaffold_3G00228400 Rroxscaffold_3G00237710 Rroxscaffold_4G00285210 Rroxscaffold_4G00299600 Rroxscaffold_4G00324940 Rroxscaffold_4G00330580 Rroxscaffold_5G00333000 Rroxscaffold_5G00347920 Rroxscaffold_5G00375310 Rroxscaffold_6G00394760 Rroxscaffold_6G00406260 Rroxscaffold_7G00165690 Rroxscaffold_7G00187680
rosa_rugosa Rorug01G0050200 Rorug02G0273800 Rorug06G0490600 Rorug06G0490600 Rorug06G0490700
rosa_samantha Rh1AG348400 Rh5AG222600 Rh6DG000500 Rh6DG194500 Rh7BG452700
rosa_wichuraiana Rw0G003060 Rw0G010530 Rw0G012970 Rw0G022560 Rw0G023390 Rw1G001270 Rw1G001530 Rw1G006070 Rw1G008210 Rw1G022090 Rw1G023320 Rw2G003790 Rw2G004140 Rw2G005280 Rw2G006460 Rw2G019620 Rw2G019840 Rw2G022530 Rw2G023280 Rw2G024990 Rw2G042380 Rw2G051390 Rw3G001640 Rw3G016720 Rw3G017100 Rw3G020890 Rw3G020900 Rw3G021100 Rw4G004820 Rw4G014950 Rw4G030920 Rw4G031400 Rw5G008500 Rw5G017950 Rw5G020170 Rw5G030160 Rw5G033050 Rw5G034640 Rw5G043920 Rw6G005060 Rw6G005540 Rw6G006720 Rw6G008460 Rw6G008670 Rw6G014780 Rw6G019100 Rw6G019350 Rw6G026310 Rw7G016810 Rw7G019180 Rw7G022890 Rw7G025880 Rw7G026390 Rw7G028340 Rw7G034850 Rw7G035170 Rw7G035420 Rw7G037990 Rw7G041560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 615
AccB1I GGYRCC 1 cut(s) 475
AccI GTMKAC 1 cut(s) 465
AclWI GGATC 1 cut(s) 725
AcsI RAATTY 2 cut(s) 240, 932
AfaI GTAC 7 cut(s) 67, 106, 280, 442, 570, 688, 942
AfiI CCNNNNNNNGG 3 cut(s) 82, 394, 950
AflII CTTAAG 1 cut(s) 176
AgsI TTSAA 6 cut(s) 115, 239, 533, 662, 698, 842
AjuI GAANNNNNNNTTGG 2 cut(s) 13, 45
AloI GAACNNNNNNTCC 2 cut(s) 477, 509
AluBI AGCT 2 cut(s) 331, 581
AluI AGCT 2 cut(s) 331, 581
AlwI GGATC 1 cut(s) 725
AoxI GGCC 1 cut(s) 300
ApeKI GCWGC 2 cut(s) 560, 581
ApoI RAATTY 2 cut(s) 240, 932
Asp700I GAANNNNTTC 1 cut(s) 618
AspS9I GGNCC 2 cut(s) 301, 832
AsuC2I CCSGG 1 cut(s) 63
AsuHPI GGTGA 4 cut(s) 9, 179, 419, 973
AsuII TTCGAA 1 cut(s) 124
AvaII GGWCC 1 cut(s) 832
AxyI CCTNAGG 1 cut(s) 471
BanI GGYRCC 1 cut(s) 475
BbsI GAAGAC 1 cut(s) 729
BbvI GCAGC 2 cut(s) 568, 572
BccI CCATC 1 cut(s) 899
BciVI GTATCC 1 cut(s) 22
BcnI CCSGG 1 cut(s) 63
BfaI CTAG 4 cut(s) 332, 446, 836, 851
BfmI CTRYAG 1 cut(s) 294
BfrI CTTAAG 1 cut(s) 176
BfuAI ACCTGC 1 cut(s) 615
BfuI GTATCC 1 cut(s) 22
BglII AGATCT 1 cut(s) 541
BisI GCNGC 2 cut(s) 561, 582
BlsI GCNGC 2 cut(s) 562, 583
BmcAI AGTACT 1 cut(s) 442
Bme1390I CCNGG 1 cut(s) 63
Bme18I GGWCC 1 cut(s) 832
BmgT120I GGNCC 2 cut(s) 301, 832
BmiI GGNNCC 2 cut(s) 477, 833
BmrFI CCNGG 1 cut(s) 63
BmsI GCATC 1 cut(s) 780
BpiI GAAGAC 1 cut(s) 729
BpmI CTGGAG 1 cut(s) 570
Bpu14I TTCGAA 1 cut(s) 124
BpuEI CTTGAG 1 cut(s) 465
BpuMI CCSGG 1 cut(s) 63
Bsc4I CCNNNNNNNGG 3 cut(s) 82, 394, 950
Bse1I ACTGG 1 cut(s) 734
Bse21I CCTNAGG 1 cut(s) 471
Bse3DI GCAATG 1 cut(s) 42
BseGI GGATG 1 cut(s) 293
BseLI CCNNNNNNNGG 3 cut(s) 82, 394, 950
BseMI GCAATG 1 cut(s) 42
BseMII CTCAG 1 cut(s) 485
BseNI ACTGG 1 cut(s) 734
BseRI GAGGAG 1 cut(s) 619
BseXI GCAGC 2 cut(s) 568, 572
BshFI GGCC 1 cut(s) 302
BshNI GGYRCC 1 cut(s) 475
BsiSI CCGG 1 cut(s) 62
BslFI GGGAC 3 cut(s) 581, 845, 961
BslI CCNNNNNNNGG 3 cut(s) 82, 394, 950
BsmFI GGGAC 3 cut(s) 581, 845, 961
BsnI GGCC 1 cut(s) 302
Bsp119I TTCGAA 1 cut(s) 124
Bsp1407I TGTACA 1 cut(s) 686
Bsp143I GATC 2 cut(s) 541, 730
BspANI GGCC 1 cut(s) 302
BspCNI CTCAG 1 cut(s) 484
BspLI GGNNCC 2 cut(s) 477, 833
BspMAI CTGCAG 1 cut(s) 298
BspMI ACCTGC 1 cut(s) 615
BspPI GGATC 1 cut(s) 725
BspT104I TTCGAA 1 cut(s) 124
BspT107I GGYRCC 1 cut(s) 475
BspTI CTTAAG 1 cut(s) 176
BsrDI GCAATG 1 cut(s) 42
BsrGI TGTACA 1 cut(s) 686
BsrI ACTGG 1 cut(s) 734
BssMI GATC 2 cut(s) 541, 730
BssNAI GTATAC 1 cut(s) 466
Bst1107I GTATAC 1 cut(s) 466
Bst4CI ACNGT 2 cut(s) 104, 801
Bst6I CTCTTC 1 cut(s) 396
BstAFI CTTAAG 1 cut(s) 176
BstAUI TGTACA 1 cut(s) 686
BstBI TTCGAA 1 cut(s) 124
BstDEI CTNAG 1 cut(s) 471
BstF5I GGATG 1 cut(s) 293
BstKTI GATC 2 cut(s) 544, 733
BstMBI GATC 2 cut(s) 541, 730
BstMWI GCNNNNNNNGC 1 cut(s) 135
BstSCI CCNGG 1 cut(s) 61
BstSFI CTRYAG 1 cut(s) 294
BstV1I GCAGC 2 cut(s) 568, 572
BstV2I GAAGAC 1 cut(s) 729
BstX2I RGATCY 1 cut(s) 541
BstXI CCANNNNNNTGG 1 cut(s) 362
BstYI RGATCY 1 cut(s) 541
BstZ17I GTATAC 1 cut(s) 466
Bsu36I CCTNAGG 1 cut(s) 471
BsuI GTATCC 1 cut(s) 22
BsuRI GGCC 1 cut(s) 302
BtgZI GCGATG 1 cut(s) 803
BtsCI GGATG 1 cut(s) 293
BtsIMutI CAGTG 1 cut(s) 943
BveI ACCTGC 1 cut(s) 615
Cfr13I GGNCC 2 cut(s) 301, 832
Csp6I GTAC 7 cut(s) 66, 105, 279, 441, 569, 687, 941
CviAII CATG 6 cut(s) 33, 130, 491, 794, 811, 969
CviQI GTAC 7 cut(s) 66, 105, 279, 441, 569, 687, 941
DdeI CTNAG 1 cut(s) 471
DpnI GATC 2 cut(s) 543, 732
DpnII GATC 2 cut(s) 541, 730
DraI TTTAAA 1 cut(s) 886
Eam1104I CTCTTC 1 cut(s) 396
EarI CTCTTC 1 cut(s) 396
Eco47I GGWCC 1 cut(s) 832
Eco81I CCTNAGG 1 cut(s) 471
EcoO109I RGGNCCY 1 cut(s) 832
EcoT22I ATGCAT 1 cut(s) 795
FaeI CATG 6 cut(s) 36, 133, 494, 797, 814, 972
FalI AAGNNNNNCTT 2 cut(s) 131, 163
FaqI GGGAC 3 cut(s) 581, 845, 961
FatI CATG 6 cut(s) 32, 129, 490, 793, 810, 968
FblI GTMKAC 1 cut(s) 465
Fnu4HI GCNGC 2 cut(s) 561, 582
FokI GGATG 1 cut(s) 300
Fsp4HI GCNGC 2 cut(s) 561, 582
FspBI CTAG 4 cut(s) 332, 446, 836, 851
GluI GCNGC 2 cut(s) 561, 582
GsuI CTGGAG 1 cut(s) 570
HaeIII GGCC 1 cut(s) 302
HapII CCGG 1 cut(s) 62
Hin1II CATG 6 cut(s) 36, 133, 494, 797, 814, 972
HincII GTYRAC 1 cut(s) 223
HindII GTYRAC 1 cut(s) 223
HinfI GANTC 4 cut(s) 39, 335, 806, 974
HpaII CCGG 1 cut(s) 62
HphI GGTGA 4 cut(s) 9, 179, 419, 973
Hpy166II GTNNAC 4 cut(s) 68, 223, 466, 941
Hpy188I TCNGA 2 cut(s) 613, 640
Hpy188III TCNNGA 6 cut(s) 317, 371, 482, 587, 662, 698
Hpy8I GTNNAC 4 cut(s) 68, 223, 466, 941
HpyCH4III ACNGT 2 cut(s) 104, 801
HpyCH4IV ACGT 1 cut(s) 94
HpyCH4V TGCA 4 cut(s) 47, 296, 793, 873
HpyF10VI GCNNNNNNNGC 1 cut(s) 135
HpyF3I CTNAG 1 cut(s) 471
HpySE526I ACGT 1 cut(s) 94
Hsp92II CATG 6 cut(s) 36, 133, 494, 797, 814, 972
Kzo9I GATC 2 cut(s) 541, 730
LmnI GCTCC 1 cut(s) 589
Lsp1109I GCAGC 2 cut(s) 568, 572
LweI GCATC 1 cut(s) 780
MaeI CTAG 4 cut(s) 332, 446, 836, 851
MaeII ACGT 1 cut(s) 94
MaeIII GTNAC 3 cut(s) 85, 736, 961
MalI GATC 2 cut(s) 543, 732
MboI GATC 2 cut(s) 541, 730
MboII GAAGA 6 cut(s) 413, 422, 536, 686, 734, 904
MfeI CAATTG 1 cut(s) 864
MflI RGATCY 1 cut(s) 541
MluCI AATT 7 cut(s) 21, 187, 240, 633, 864, 927, 932
MlyI GAGTC 2 cut(s) 815, 983
Mph1103I ATGCAT 1 cut(s) 795
MroXI GAANNNNTTC 1 cut(s) 618
MseI TTAA 5 cut(s) 177, 525, 885, 930, 988
MspCI CTTAAG 1 cut(s) 176
MspI CCGG 1 cut(s) 62
MspR9I CCNGG 1 cut(s) 63
MunI CAATTG 1 cut(s) 864
MwoI GCNNNNNNNGC 1 cut(s) 135
NciI CCSGG 1 cut(s) 63
NdeII GATC 2 cut(s) 541, 730
NlaIII CATG 6 cut(s) 36, 133, 494, 797, 814, 972
NlaIV GGNNCC 2 cut(s) 477, 833
NmuCI GTSAC 2 cut(s) 736, 961
NsiI ATGCAT 1 cut(s) 795
NspV TTCGAA 1 cut(s) 124
PcsI WCGNNNNNNNCGW 1 cut(s) 100
PdmI GAANNNNTTC 1 cut(s) 618
PfeI GAWTC 2 cut(s) 39, 335
PkrI GCNGC 2 cut(s) 562, 583
PleI GAGTC 2 cut(s) 814, 982
PpsI GAGTC 2 cut(s) 814, 982
PpuMI RGGWCCY 1 cut(s) 832
Psp5II RGGWCCY 1 cut(s) 832
PspN4I GGNNCC 2 cut(s) 477, 833
PspPI GGNCC 2 cut(s) 301, 832
PspPPI RGGWCCY 1 cut(s) 832
PstI CTGCAG 1 cut(s) 298
PsuI RGATCY 1 cut(s) 541
RsaI GTAC 7 cut(s) 67, 106, 280, 442, 570, 688, 942
RsaNI GTAC 7 cut(s) 66, 105, 279, 441, 569, 687, 941
SaqAI TTAA 5 cut(s) 177, 525, 885, 930, 988
SatI GCNGC 2 cut(s) 561, 582
Sau3AI GATC 2 cut(s) 541, 730
Sau96I GGNCC 2 cut(s) 301, 832
ScaI AGTACT 1 cut(s) 442
SchI GAGTC 2 cut(s) 815, 983
ScrFI CCNGG 1 cut(s) 63
SfaNI GCATC 1 cut(s) 780
SfcI CTRYAG 1 cut(s) 294
SfuI TTCGAA 1 cut(s) 124
SinI GGWCC 1 cut(s) 832
SmlI CTYRAG 2 cut(s) 176, 480
SmoI CTYRAG 2 cut(s) 176, 480
Sse9I AATT 7 cut(s) 21, 187, 240, 633, 864, 927, 932
SspMI CTAG 4 cut(s) 332, 446, 836, 851
StyD4I CCNGG 1 cut(s) 61
TaaI ACNGT 2 cut(s) 104, 801
TaiI ACGT 1 cut(s) 97
TaqI TCGA 2 cut(s) 124, 253
TasI AATT 7 cut(s) 21, 187, 240, 633, 864, 927, 932
TatI WGTACW 3 cut(s) 440, 568, 686
TfiI GAWTC 2 cut(s) 39, 335
Tru1I TTAA 5 cut(s) 177, 525, 885, 930, 988
Tru9I TTAA 5 cut(s) 177, 525, 885, 930, 988
TscAI CASTG 1 cut(s) 943
TseFI GTSAC 2 cut(s) 736, 961
TseI GCWGC 2 cut(s) 560, 581
Tsp45I GTSAC 2 cut(s) 736, 961
TspDTI ATGAA 8 cut(s) 21, 260, 336, 570, 810, 827, 837, 957
TspRI CASTG 1 cut(s) 943
Vha464I CTTAAG 1 cut(s) 176
VpaK11BI GGWCC 1 cut(s) 832
XapI RAATTY 2 cut(s) 240, 932
XmiI GTMKAC 1 cut(s) 465
XmnI GAANNNNTTC 1 cut(s) 618
XspI CTAG 4 cut(s) 332, 446, 836, 851
ZrmI AGTACT 1 cut(s) 442
Zsp2I ATGCAT 1 cut(s) 795
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.