Rmu_co8363787.1_g000001
RLK Family

cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8363787.1
OG0000106
Physical Location & Seq
Forward (+)
1 .. 997
997 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8363787.1_g000001.1.cds

Sequence Viewer

Length: 677 bp
aagcaccacaaggaacacaagcagatcaacaaaagctcatgcaattcttgatgggactcaatgagacttacagtgcaacccgtgatcaaatcctcttgatgaatccccttccaagtgtcagacaagcatatgctgccattgcacaagaagaaaagcaacgtttcattatgtcttcacatgttgtggcagagcccagttcgaacgccgccgccatggctgttcggagctgtggccagccaaaccagaccttcaacagaggaggttgtggtgaccgaccaacttttcagaccagtcgggatgcggaacgcagctacaccacgcgttttggttcaggtcgaggaaggggaaggccgcattgcacctattgtggtgatccaagacattgggtccaaacttgttttcacttgattggttttccttcgggtcatcccaaggcaaagcaaggatctagaaatttccccaagcagaacactgttgcaaaccaggttactgcaacgggcatagtagaagaggagaataggtcagcaattactttatctgaggcccaatttaaacaatttttagctacactccaacaaaagcccaatccaaatactggctcaagttccaaagcaaatgcagtaacgcagccagtggagaaaaagtccatattgaagccacaggttctttgcctctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_3 Retrotrans_gag

Protein Analysis

224

Amino Acids

24.6

Weight (kDa)

9.69

Isoelectric Point (pI)

47.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20980 AT3G21000
fragaria_vesca FvH4_1g15931 FvH4_1g15931 FvH4_1g18381 FvH4_1g18382 FvH4_1g22571 FvH4_1g24950 FvH4_1g29372 FvH4_2g03582 FvH4_2g09851 FvH4_2g13112 FvH4_2g20843 FvH4_2g22701 FvH4_2g22702 FvH4_2g23403 FvH4_2g40201 FvH4_3g03542 FvH4_3g03543 FvH4_3g04761 FvH4_3g10464 FvH4_3g12741 FvH4_3g15781 FvH4_3g30981 FvH4_4g00985 FvH4_4g07035 FvH4_4g08192 FvH4_4g08211 FvH4_4g08553 FvH4_4g14242 FvH4_4g14243 FvH4_4g14641 FvH4_4g14843 FvH4_4g14844 FvH4_4g15061 FvH4_4g16281 FvH4_4g19152 FvH4_4g26451 FvH4_5g06442 FvH4_5g22521 FvH4_5g24301 FvH4_5g38641 FvH4_6g02393 FvH4_6g12782 FvH4_6g13871 FvH4_6g19391 FvH4_6g20105 FvH4_6g21292 FvH4_6g23581 FvH4_6g29153 FvH4_6g29691 FvH4_6g30871 FvH4_6g33351 FvH4_6g37042 FvH4_6g38781 FvH4_6g40340 FvH4_7g11221 FvH4_7g23352 FvH4_7g23352 FvH4_7g31212 FvH4_7g32172 FvH4_7g32173 FvH4_7g33701
malus_domestica MD03G1006900.v1.1 MD04G1039100.v1.1 MD04G1239100.v1.1 MD05G1048700.v1.1 MD08G1001800.v1.1 MD09G1165800.v1.1 MD11G1065200.v1.1 MD11G1138200.v1.1 MD14G1033300.v1.1 MD14G1173900.v1.1 MD15G1218200.v1.1 MD16G1034000.v1.1
prunus_persica Prupe.1G219500_v2.0.a1 Prupe.2G169400_v2.0.a1 Prupe.4G109700_v2.0.a1 Prupe.7G022000_v2.0.a1
pyrus_communis pycom01g02000 pycom02g13350 pycom03g01010 pycom04g05000 pycom04g06100 pycom05g05580 pycom05g09950 pycom05g13280 pycom05g26610 pycom06g05940 pycom06g07760 pycom07g06120 pycom07g24780 pycom08g08820 pycom09g03600 pycom09g07200 pycom10g01280 pycom10g06730 pycom10g08410 pycom10g25520 pycom11g00470 pycom11g05250 pycom11g25180 pycom12g08050 pycom13g14760 pycom13g28170 pycom15g14310 pycom15g19880 pycom15g24230 pycom15g33640 pycom16g02150 pycom16g16240 pycom16g20050 pycom16g21090 pycom17g06100
rosa_chinensis RchiOBHm_Chr1g0322161 RchiOBHm_Chr1g0326341 RchiOBHm_Chr1g0357701 RchiOBHm_Chr1g0379861 RchiOBHm_Chr1g0383421 RchiOBHm_Chr2g0093981 RchiOBHm_Chr2g0139051 RchiOBHm_Chr2g0145501 RchiOBHm_Chr3g0450971 RchiOBHm_Chr3g0451441 RchiOBHm_Chr3g0457411 RchiOBHm_Chr4g0436261 RchiOBHm_Chr5g0051431 RchiOBHm_Chr5g0064031 RchiOBHm_Chr5g0073141 RchiOBHm_Chr5g0080061 RchiOBHm_Chr7g0200561 RchiOBHm_Chr7g0235911
rosa_laevigata RLG00000000145 RLG00000000429 RLG00000020339 RLG00000035212
rosa_multiflora Rmu_co7977988.1_g000001 Rmu_co8037866.1_g000001 Rmu_co8243895.1_g000001 Rmu_co8363787.1_g000001 Rmu_co8381003.1_g000001 Rmu_sc0000263.1_g000006 Rmu_sc0000349.1_g000002 Rmu_sc0000455.1_g000031 Rmu_sc0000936.1_g000022 Rmu_sc0001035.1_g000023 Rmu_sc0001169.1_g000019 Rmu_sc0001250.1_g000026 Rmu_sc0002200.1_g000051 Rmu_sc0002230.1_g000027 Rmu_sc0002591.1_g000039 Rmu_sc0003182.1_g000003 Rmu_sc0003441.1_g000068 Rmu_sc0003722.1_g000018 Rmu_sc0003764.1_g000007 Rmu_sc0006014.1_g000016 Rmu_sc0012582.1_g000002 Rmu_sc0013519.1_g000002 Rmu_sc0014550.1_g000005 Rmu_sc0014857.1_g000007 Rmu_sc0019855.1_g000001 Rmu_sc0030839.1_g000001 Rmu_sc0031308.1_g000001
rosa_roxburghii Rroxscaffold_1G00011290 Rroxscaffold_1G00041340 Rroxscaffold_1G00053780 Rroxscaffold_1G00059130 Rroxscaffold_1G00061580 Rroxscaffold_2G00080940 Rroxscaffold_2G00109540 Rroxscaffold_3G00228400 Rroxscaffold_3G00237710 Rroxscaffold_4G00285210 Rroxscaffold_4G00299600 Rroxscaffold_4G00324940 Rroxscaffold_4G00330580 Rroxscaffold_5G00333000 Rroxscaffold_5G00347920 Rroxscaffold_5G00375310 Rroxscaffold_6G00394760 Rroxscaffold_6G00406260 Rroxscaffold_7G00165690 Rroxscaffold_7G00187680
rosa_rugosa Rorug01G0050200 Rorug02G0273800 Rorug06G0490600 Rorug06G0490600 Rorug06G0490700
rosa_samantha Rh1AG348400 Rh5AG222600 Rh6DG000500 Rh6DG194500 Rh7BG452700
rosa_wichuraiana Rw0G003060 Rw0G010530 Rw0G012970 Rw0G022560 Rw0G023390 Rw1G001270 Rw1G001530 Rw1G006070 Rw1G008210 Rw1G022090 Rw1G023320 Rw2G003790 Rw2G004140 Rw2G005280 Rw2G006460 Rw2G019620 Rw2G019840 Rw2G022530 Rw2G023280 Rw2G024990 Rw2G042380 Rw2G051390 Rw3G001640 Rw3G016720 Rw3G017100 Rw3G020890 Rw3G020900 Rw3G021100 Rw4G004820 Rw4G014950 Rw4G030920 Rw4G031400 Rw5G008500 Rw5G017950 Rw5G020170 Rw5G030160 Rw5G033050 Rw5G034640 Rw5G043920 Rw6G005060 Rw6G005540 Rw6G006720 Rw6G008460 Rw6G008670 Rw6G014780 Rw6G019100 Rw6G019350 Rw6G026310 Rw7G016810 Rw7G019180 Rw7G022890 Rw7G025880 Rw7G026390 Rw7G028340 Rw7G034850 Rw7G035170 Rw7G035420 Rw7G037990 Rw7G041560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 595
AccII CGCG 1 cut(s) 321
AciI CCGC 4 cut(s) 206, 209, 301, 352
AclI AACGTT 1 cut(s) 159
AclWI GGATC 2 cut(s) 367, 453
AcoI YGGCCR 1 cut(s) 231
AcsI RAATTY 1 cut(s) 453
AfiI CCNNNNNNNGG 1 cut(s) 595
AflIII ACRYGT 2 cut(s) 177, 319
AgsI TTSAA 2 cut(s) 252, 654
AhdI GACNNNNNGTC 1 cut(s) 385
AjnI CCWGG 1 cut(s) 482
AjuI GAANNNNNNNTTGG 2 cut(s) 383, 415
AluBI AGCT 4 cut(s) 36, 227, 311, 565
AluI AGCT 4 cut(s) 36, 227, 311, 565
Alw26I GTCTC 1 cut(s) 58
AlwI GGATC 2 cut(s) 367, 453
AoxI GGCC 3 cut(s) 231, 349, 542
ApeKI GCWGC 3 cut(s) 133, 308, 627
ApoI RAATTY 1 cut(s) 453
AspS9I GGNCC 2 cut(s) 387, 543
AsuHPI GGTGA 2 cut(s) 280, 382
AsuII TTCGAA 1 cut(s) 199
AvaII GGWCC 1 cut(s) 387
BalI TGGCCA 1 cut(s) 233
BanII GRGCYC 1 cut(s) 194
BbsI GAAGAC 1 cut(s) 164
BbvI GCAGC 3 cut(s) 120, 320, 639
BccI CCATC 1 cut(s) 45
BciT130I CCWGG 1 cut(s) 484
BclI TGATCA 1 cut(s) 84
BcoDI GTCTC 1 cut(s) 58
BfaI CTAG 1 cut(s) 449
BglI GCCNNNNNGGC 1 cut(s) 214
BisI GCNGC 6 cut(s) 134, 206, 209, 309, 352, 628
BlsI GCNGC 6 cut(s) 135, 207, 210, 310, 353, 629
Bme1390I CCNGG 1 cut(s) 484
Bme18I GGWCC 1 cut(s) 387
BmeRI GACNNNNNGTC 1 cut(s) 385
BmgT120I GGNCC 2 cut(s) 387, 543
BmiI GGNNCC 1 cut(s) 388
BmrFI CCNGG 1 cut(s) 484
BmrI ACTGGG 1 cut(s) 188
BmsI GCATC 1 cut(s) 288
BmuI ACTGGG 1 cut(s) 188
BpiI GAAGAC 1 cut(s) 164
Bpu14I TTCGAA 1 cut(s) 199
BpuEI CTTGAG 1 cut(s) 585
BsaJI CCNNGG 2 cut(s) 212, 431
BsaXI ACNNNNNCTCC 4 cut(s) 505, 535, 628, 658
Bsc4I CCNNNNNNNGG 1 cut(s) 595
Bse1I ACTGG 4 cut(s) 194, 290, 600, 631
Bse3DI GCAATG 2 cut(s) 137, 354
BseBI CCWGG 1 cut(s) 484
BseDI CCNNGG 2 cut(s) 212, 431
BseGI GGATG 2 cut(s) 303, 426
BseLI CCNNNNNNNGG 1 cut(s) 595
BseMI GCAATG 2 cut(s) 137, 354
BseMII CTCAG 1 cut(s) 530
BseNI ACTGG 4 cut(s) 194, 290, 600, 631
BseRI GAGGAG 2 cut(s) 272, 526
BseXI GCAGC 3 cut(s) 120, 320, 639
Bsh1236I CGCG 1 cut(s) 321
BshFI GGCC 3 cut(s) 233, 351, 544
BslFI GGGAC 1 cut(s) 68
BslI CCNNNNNNNGG 1 cut(s) 595
BsmAI GTCTC 1 cut(s) 58
BsmFI GGGAC 1 cut(s) 68
BsnI GGCC 3 cut(s) 233, 351, 544
Bsp119I TTCGAA 1 cut(s) 199
Bsp1286I GDGCHC 1 cut(s) 194
Bsp143I GATC 4 cut(s) 24, 84, 372, 445
Bsp19I CCATGG 1 cut(s) 212
BspACI CCGC 4 cut(s) 206, 209, 301, 352
BspANI GGCC 3 cut(s) 233, 351, 544
BspCNI CTCAG 1 cut(s) 531
BspFNI CGCG 1 cut(s) 321
BspLI GGNNCC 1 cut(s) 388
BspPI GGATC 2 cut(s) 367, 453
BspT104I TTCGAA 1 cut(s) 199
BsrDI GCAATG 2 cut(s) 137, 354
BsrI ACTGG 4 cut(s) 194, 290, 600, 631
BssECI CCNNGG 2 cut(s) 212, 431
BssMI GATC 4 cut(s) 24, 84, 372, 445
BssT1I CCWWGG 2 cut(s) 212, 431
Bst2UI CCWGG 1 cut(s) 484
Bst4CI ACNGT 2 cut(s) 73, 474
Bst6I CTCTTC 1 cut(s) 503
BstAPI GCANNNNNTGC 1 cut(s) 133
BstBI TTCGAA 1 cut(s) 199
BstC8I GCNNGC 1 cut(s) 235
BstDEI CTNAG 1 cut(s) 539
BstDSI CCRYGG 1 cut(s) 212
BstEII GGTNACC 1 cut(s) 268
BstF5I GGATG 2 cut(s) 303, 426
BstFNI CGCG 1 cut(s) 321
BstKTI GATC 4 cut(s) 27, 87, 375, 448
BstMAI GTCTC 1 cut(s) 58
BstMBI GATC 4 cut(s) 24, 84, 372, 445
BstMWI GCNNNNNNNGC 3 cut(s) 133, 139, 214
BstNI CCWGG 1 cut(s) 484
BstNSI RCATGY 1 cut(s) 181
BstPI GGTNACC 1 cut(s) 268
BstSCI CCNGG 1 cut(s) 482
BstUI CGCG 1 cut(s) 321
BstV1I GCAGC 3 cut(s) 120, 320, 639
BstV2I GAAGAC 1 cut(s) 164
BstX2I RGATCY 1 cut(s) 445
BstXI CCANNNNNNTGG 1 cut(s) 383
BstYI RGATCY 1 cut(s) 445
BsuRI GGCC 3 cut(s) 233, 351, 544
BtgI CCRYGG 1 cut(s) 212
BtsCI GGATG 2 cut(s) 303, 426
BtsIMutI CAGTG 3 cut(s) 78, 470, 638
Cac8I GCNNGC 1 cut(s) 235
Cfr13I GGNCC 2 cut(s) 387, 543
CsiI ACCWGGT 1 cut(s) 482
CspCI CAANNNNNGTGG 2 cut(s) 306, 341
CviAII CATG 3 cut(s) 39, 178, 213
DdeI CTNAG 1 cut(s) 539
DpnI GATC 4 cut(s) 26, 86, 374, 447
DpnII GATC 4 cut(s) 24, 84, 372, 445
DraI TTTAAA 1 cut(s) 552
DriI GACNNNNNGTC 1 cut(s) 385
EaeI YGGCCR 1 cut(s) 231
Eam1104I CTCTTC 1 cut(s) 503
Eam1105I GACNNNNNGTC 1 cut(s) 385
EarI CTCTTC 1 cut(s) 503
Eco130I CCWWGG 2 cut(s) 212, 431
Eco24I GRGCYC 1 cut(s) 194
Eco47I GGWCC 1 cut(s) 387
Eco91I GGTNACC 1 cut(s) 268
EcoO65I GGTNACC 1 cut(s) 268
EcoRII CCWGG 1 cut(s) 482
EcoT14I CCWWGG 2 cut(s) 212, 431
EcoT38I GRGCYC 1 cut(s) 194
ErhI CCWWGG 2 cut(s) 212, 431
FaeI CATG 3 cut(s) 42, 181, 216
FaiI YATR 8 cut(s) 40, 129, 131, 169, 179, 214, 502, 649
FaqI GGGAC 1 cut(s) 68
FatI CATG 3 cut(s) 38, 177, 212
FauNDI CATATG 1 cut(s) 129
FbaI TGATCA 1 cut(s) 84
Fnu4HI GCNGC 6 cut(s) 134, 206, 209, 309, 352, 628
FokI GGATG 2 cut(s) 310, 413
FriOI GRGCYC 1 cut(s) 194
Fsp4HI GCNGC 6 cut(s) 134, 206, 209, 309, 352, 628
FspBI CTAG 1 cut(s) 449
GluI GCNGC 6 cut(s) 134, 206, 209, 309, 352, 628
HaeIII GGCC 3 cut(s) 233, 351, 544
Hin1II CATG 3 cut(s) 42, 181, 216
HinfI GANTC 2 cut(s) 56, 102
HphI GGTGA 2 cut(s) 280, 382
Hpy188I TCNGA 5 cut(s) 121, 224, 287, 540, 676
Hpy188III TCNNGA 4 cut(s) 48, 96, 295, 449
HpyAV CCTTC 5 cut(s) 118, 258, 335, 341, 428
HpyCH4III ACNGT 2 cut(s) 73, 474
HpyCH4IV ACGT 1 cut(s) 159
HpyCH4V TGCA 7 cut(s) 42, 76, 142, 359, 478, 493, 619
HpyF10VI GCNNNNNNNGC 3 cut(s) 133, 139, 214
HpyF3I CTNAG 1 cut(s) 539
HpySE526I ACGT 1 cut(s) 159
Hsp92II CATG 3 cut(s) 42, 181, 216
Ksp22I TGATCA 1 cut(s) 84
Kzo9I GATC 4 cut(s) 24, 84, 372, 445
LmnI GCTCC 1 cut(s) 224
Lsp1109I GCAGC 3 cut(s) 120, 320, 639
LweI GCATC 1 cut(s) 288
MabI ACCWGGT 1 cut(s) 482
MaeI CTAG 1 cut(s) 449
MaeII ACGT 1 cut(s) 159
MaeIII GTNAC 3 cut(s) 268, 486, 621
MalI GATC 4 cut(s) 26, 86, 374, 447
MboI GATC 4 cut(s) 24, 84, 372, 445
MboII GAAGA 3 cut(s) 160, 164, 520
MflI RGATCY 1 cut(s) 445
MhlI GDGCHC 1 cut(s) 194
MlsI TGGCCA 1 cut(s) 233
MluCI AATT 5 cut(s) 43, 453, 527, 547, 556
MluI ACGCGT 1 cut(s) 319
MluNI TGGCCA 1 cut(s) 233
MlyI GAGTC 1 cut(s) 50
MmeI TCCRAC 1 cut(s) 597
MnlI CCTC 6 cut(s) 103, 250, 253, 331, 504, 534
Mox20I TGGCCA 1 cut(s) 233
MscI TGGCCA 1 cut(s) 233
MseI TTAA 1 cut(s) 551
Msp20I TGGCCA 1 cut(s) 233
MspR9I CCNGG 1 cut(s) 484
MvaI CCWGG 1 cut(s) 484
MvnI CGCG 1 cut(s) 321
MwoI GCNNNNNNNGC 3 cut(s) 133, 139, 214
NcoI CCATGG 1 cut(s) 212
NdeI CATATG 1 cut(s) 129
NdeII GATC 4 cut(s) 24, 84, 372, 445
NlaIII CATG 3 cut(s) 42, 181, 216
NlaIV GGNNCC 1 cut(s) 388
NmuCI GTSAC 1 cut(s) 268
NspI RCATGY 1 cut(s) 181
NspV TTCGAA 1 cut(s) 199
PciI ACATGT 1 cut(s) 177
PfeI GAWTC 1 cut(s) 102
PflMI CCANNNNNTGG 1 cut(s) 595
PkrI GCNGC 6 cut(s) 135, 207, 210, 310, 353, 629
PleI GAGTC 1 cut(s) 50
PpsI GAGTC 1 cut(s) 50
PscI ACATGT 1 cut(s) 177
Psp1406I AACGTT 1 cut(s) 159
Psp6I CCWGG 1 cut(s) 482
PspEI GGTNACC 1 cut(s) 268
PspGI CCWGG 1 cut(s) 482
PspN4I GGNNCC 1 cut(s) 388
PspPI GGNCC 2 cut(s) 387, 543
PsuI RGATCY 1 cut(s) 445
SaqAI TTAA 1 cut(s) 551
SatI GCNGC 6 cut(s) 134, 206, 209, 309, 352, 628
Sau3AI GATC 4 cut(s) 24, 84, 372, 445
Sau96I GGNCC 2 cut(s) 387, 543
SchI GAGTC 1 cut(s) 50
ScrFI CCNGG 1 cut(s) 484
SduI GDGCHC 1 cut(s) 194
SexAI ACCWGGT 1 cut(s) 482
SfaNI GCATC 1 cut(s) 288
SfuI TTCGAA 1 cut(s) 199
SinI GGWCC 1 cut(s) 387
SmlI CTYRAG 1 cut(s) 600
SmoI CTYRAG 1 cut(s) 600
Sse9I AATT 5 cut(s) 43, 453, 527, 547, 556
SsiI CCGC 4 cut(s) 206, 209, 301, 352
SspMI CTAG 1 cut(s) 449
StyD4I CCNGG 1 cut(s) 482
StyI CCWWGG 2 cut(s) 212, 431
TaaI ACNGT 2 cut(s) 73, 474
TaiI ACGT 1 cut(s) 162
TaqI TCGA 2 cut(s) 199, 336
TaqII GACCGA 1 cut(s) 287
TasI AATT 5 cut(s) 43, 453, 527, 547, 556
TauI GCSGC 3 cut(s) 208, 211, 354
TfiI GAWTC 1 cut(s) 102
Tru1I TTAA 1 cut(s) 551
Tru9I TTAA 1 cut(s) 551
TscAI CASTG 3 cut(s) 78, 477, 638
TseFI GTSAC 1 cut(s) 268
TseI GCWGC 3 cut(s) 133, 308, 627
Tsp45I GTSAC 1 cut(s) 268
TspDTI ATGAA 2 cut(s) 115, 153
TspRI CASTG 3 cut(s) 78, 477, 638
Van91I CCANNNNNTGG 1 cut(s) 595
VpaK11BI GGWCC 1 cut(s) 387
XapI RAATTY 1 cut(s) 453
XbaI TCTAGA 1 cut(s) 448
XceI RCATGY 1 cut(s) 181
XspI CTAG 1 cut(s) 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.