FvH4_4g00985
RLK Family

cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
954116 .. 954966
851 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g00985.t1

Sequence Viewer

Length: 555 bp
ATGAATCATTTGCCTTCGGTGAGACAAGCTTATGCTTCCCTTGTCCAAGAAGAAAAGCAACGGGAACTTGGTTCCTCTCTTCTTGCTTCATCCAGCACCGCAGCAATGGCGGTGCGCAGCAACTCCAAATCACAATCTCAGATGCAAGGGAATCGAGGCAACACTCAAGGCTATACTCAAGGAAATAACTTCCGTCCTCATGCCCCAATCAAGCATTGCACTTATTGTGATCGAGATTATCATACTGAAGCAACTTGCCATAAAAAGCATGGTTACCCTCCTGGTCATCGTCTCTACAAAGGCCCTAAGGAAGCTAATTCTGCAAGGCAACGTCAAGGAAATTCCACTGTTAACCATGTCAACGTGGATAATCATGTCAATGCTGCCCCAACATTCAAGGAACTCCAAGGAATGCTTCCTAACCTCACTGAGGATCAGTACACTCAAGTAATTGCTGCCTTGACTCCTACACCACAAATTCCTCAAGCCAATGCTACTTCTGCAACTGAACATGCTACAGGACTTGGTTACGAGGACGATGATTGGTGTGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

185

Amino Acids

20.23

Weight (kDa)

7.77

Isoelectric Point (pI)

39.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20980 AT3G21000
fragaria_vesca FvH4_1g15931 FvH4_1g15931 FvH4_1g18381 FvH4_1g18382 FvH4_1g22571 FvH4_1g24950 FvH4_1g29372 FvH4_2g03582 FvH4_2g09851 FvH4_2g13112 FvH4_2g20843 FvH4_2g22701 FvH4_2g22702 FvH4_2g23403 FvH4_2g40201 FvH4_3g03542 FvH4_3g03543 FvH4_3g04761 FvH4_3g10464 FvH4_3g12741 FvH4_3g15781 FvH4_3g30981 FvH4_4g00985 FvH4_4g07035 FvH4_4g08192 FvH4_4g08211 FvH4_4g08553 FvH4_4g14242 FvH4_4g14243 FvH4_4g14641 FvH4_4g14843 FvH4_4g14844 FvH4_4g15061 FvH4_4g16281 FvH4_4g19152 FvH4_4g26451 FvH4_5g06442 FvH4_5g22521 FvH4_5g24301 FvH4_5g38641 FvH4_6g02393 FvH4_6g12782 FvH4_6g13871 FvH4_6g19391 FvH4_6g20105 FvH4_6g21292 FvH4_6g23581 FvH4_6g29153 FvH4_6g29691 FvH4_6g30871 FvH4_6g33351 FvH4_6g37042 FvH4_6g38781 FvH4_6g40340 FvH4_7g11221 FvH4_7g23352 FvH4_7g23352 FvH4_7g31212 FvH4_7g32172 FvH4_7g32173 FvH4_7g33701
malus_domestica MD03G1006900.v1.1 MD04G1039100.v1.1 MD04G1239100.v1.1 MD05G1048700.v1.1 MD08G1001800.v1.1 MD09G1165800.v1.1 MD11G1065200.v1.1 MD11G1138200.v1.1 MD14G1033300.v1.1 MD14G1173900.v1.1 MD15G1218200.v1.1 MD16G1034000.v1.1
prunus_persica Prupe.1G219500_v2.0.a1 Prupe.2G169400_v2.0.a1 Prupe.4G109700_v2.0.a1 Prupe.7G022000_v2.0.a1
pyrus_communis pycom01g02000 pycom02g13350 pycom03g01010 pycom04g05000 pycom04g06100 pycom05g05580 pycom05g09950 pycom05g13280 pycom05g26610 pycom06g05940 pycom06g07760 pycom07g06120 pycom07g24780 pycom08g08820 pycom09g03600 pycom09g07200 pycom10g01280 pycom10g06730 pycom10g08410 pycom10g25520 pycom11g00470 pycom11g05250 pycom11g25180 pycom12g08050 pycom13g14760 pycom13g28170 pycom15g14310 pycom15g19880 pycom15g24230 pycom15g33640 pycom16g02150 pycom16g16240 pycom16g20050 pycom16g21090 pycom17g06100
rosa_chinensis RchiOBHm_Chr1g0322161 RchiOBHm_Chr1g0326341 RchiOBHm_Chr1g0357701 RchiOBHm_Chr1g0379861 RchiOBHm_Chr1g0383421 RchiOBHm_Chr2g0093981 RchiOBHm_Chr2g0139051 RchiOBHm_Chr2g0145501 RchiOBHm_Chr3g0450971 RchiOBHm_Chr3g0451441 RchiOBHm_Chr3g0457411 RchiOBHm_Chr4g0436261 RchiOBHm_Chr5g0051431 RchiOBHm_Chr5g0064031 RchiOBHm_Chr5g0073141 RchiOBHm_Chr5g0080061 RchiOBHm_Chr7g0200561 RchiOBHm_Chr7g0235911
rosa_laevigata RLG00000000145 RLG00000000429 RLG00000020339 RLG00000035212
rosa_multiflora Rmu_co7977988.1_g000001 Rmu_co8037866.1_g000001 Rmu_co8243895.1_g000001 Rmu_co8363787.1_g000001 Rmu_co8381003.1_g000001 Rmu_sc0000263.1_g000006 Rmu_sc0000349.1_g000002 Rmu_sc0000455.1_g000031 Rmu_sc0000936.1_g000022 Rmu_sc0001035.1_g000023 Rmu_sc0001169.1_g000019 Rmu_sc0001250.1_g000026 Rmu_sc0002200.1_g000051 Rmu_sc0002230.1_g000027 Rmu_sc0002591.1_g000039 Rmu_sc0003182.1_g000003 Rmu_sc0003441.1_g000068 Rmu_sc0003722.1_g000018 Rmu_sc0003764.1_g000007 Rmu_sc0006014.1_g000016 Rmu_sc0012582.1_g000002 Rmu_sc0013519.1_g000002 Rmu_sc0014550.1_g000005 Rmu_sc0014857.1_g000007 Rmu_sc0019855.1_g000001 Rmu_sc0030839.1_g000001 Rmu_sc0031308.1_g000001
rosa_roxburghii Rroxscaffold_1G00011290 Rroxscaffold_1G00041340 Rroxscaffold_1G00053780 Rroxscaffold_1G00059130 Rroxscaffold_1G00061580 Rroxscaffold_2G00080940 Rroxscaffold_2G00109540 Rroxscaffold_3G00228400 Rroxscaffold_3G00237710 Rroxscaffold_4G00285210 Rroxscaffold_4G00299600 Rroxscaffold_4G00324940 Rroxscaffold_4G00330580 Rroxscaffold_5G00333000 Rroxscaffold_5G00347920 Rroxscaffold_5G00375310 Rroxscaffold_6G00394760 Rroxscaffold_6G00406260 Rroxscaffold_7G00165690 Rroxscaffold_7G00187680
rosa_rugosa Rorug01G0050200 Rorug02G0273800 Rorug06G0490600 Rorug06G0490600 Rorug06G0490700
rosa_samantha Rh1AG348400 Rh5AG222600 Rh6DG000500 Rh6DG194500 Rh7BG452700
rosa_wichuraiana Rw0G003060 Rw0G010530 Rw0G012970 Rw0G022560 Rw0G023390 Rw1G001270 Rw1G001530 Rw1G006070 Rw1G008210 Rw1G022090 Rw1G023320 Rw2G003790 Rw2G004140 Rw2G005280 Rw2G006460 Rw2G019620 Rw2G019840 Rw2G022530 Rw2G023280 Rw2G024990 Rw2G042380 Rw2G051390 Rw3G001640 Rw3G016720 Rw3G017100 Rw3G020890 Rw3G020900 Rw3G021100 Rw4G004820 Rw4G014950 Rw4G030920 Rw4G031400 Rw5G008500 Rw5G017950 Rw5G020170 Rw5G030160 Rw5G033050 Rw5G034640 Rw5G043920 Rw6G005060 Rw6G005540 Rw6G006720 Rw6G008460 Rw6G008670 Rw6G014780 Rw6G019100 Rw6G019350 Rw6G026310 Rw7G016810 Rw7G019180 Rw7G022890 Rw7G025880 Rw7G026390 Rw7G028340 Rw7G034850 Rw7G035170 Rw7G035420 Rw7G037990 Rw7G041560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 116
AciI CCGC 2 cut(s) 99, 110
AclWI GGATC 1 cut(s) 441
AcsI RAATTY 2 cut(s) 340, 477
AcuI CTGAAG 1 cut(s) 267
AfaI GTAC 1 cut(s) 440
AfiI CCNNNNNNNGG 1 cut(s) 430
AgsI TTSAA 1 cut(s) 397
AjnI CCWGG 1 cut(s) 280
AjuI GAANNNNNNNTTGG 2 cut(s) 399, 431
AluBI AGCT 2 cut(s) 29, 314
AluI AGCT 2 cut(s) 29, 314
Alw26I GTCTC 2 cut(s) 16, 296
AlwI GGATC 1 cut(s) 441
AoxI GGCC 1 cut(s) 301
ApeKI GCWGC 4 cut(s) 101, 117, 383, 455
ApoI RAATTY 2 cut(s) 340, 477
AspLEI GCGC 1 cut(s) 117
AspS9I GGNCC 1 cut(s) 302
AsuHPI GGTGA 1 cut(s) 31
AxyI CCTNAGG 1 cut(s) 306
BbvI GCAGC 4 cut(s) 113, 129, 370, 442
BcgI CGANNNNNNTGC 2 cut(s) 134, 168
BciT130I CCWGG 1 cut(s) 282
BcoDI GTCTC 2 cut(s) 16, 296
BfmI CTRYAG 1 cut(s) 516
BisI GCNGC 4 cut(s) 102, 118, 384, 456
BlsI GCNGC 4 cut(s) 103, 119, 385, 457
Bme1390I CCNGG 1 cut(s) 282
BmgT120I GGNCC 1 cut(s) 302
BmiI GGNNCC 1 cut(s) 73
BmrFI CCNGG 1 cut(s) 282
BmsI GCATC 1 cut(s) 132
BpuEI CTTGAG 4 cut(s) 150, 162, 429, 468
BsaJI CCNNGG 1 cut(s) 406
Bsc4I CCNNNNNNNGG 1 cut(s) 430
Bse21I CCTNAGG 1 cut(s) 306
Bse3DI GCAATG 2 cut(s) 111, 214
BseBI CCWGG 1 cut(s) 282
BseDI CCNNGG 1 cut(s) 406
BseGI GGATG 1 cut(s) 89
BseLI CCNNNNNNNGG 1 cut(s) 430
BseMI GCAATG 2 cut(s) 111, 214
BseMII CTCAG 2 cut(s) 152, 420
BseXI GCAGC 4 cut(s) 113, 129, 370, 442
BshFI GGCC 1 cut(s) 303
BslI CCNNNNNNNGG 1 cut(s) 430
BsmAI GTCTC 2 cut(s) 16, 296
BsmBI CGTCTC 1 cut(s) 296
BsmI GAATGC 1 cut(s) 417
BsnI GGCC 1 cut(s) 303
Bsp143I GATC 2 cut(s) 229, 433
BspACI CCGC 2 cut(s) 99, 110
BspANI GGCC 1 cut(s) 303
BspCNI CTCAG 2 cut(s) 151, 421
BspLI GGNNCC 1 cut(s) 73
BspPI GGATC 1 cut(s) 441
BsrDI GCAATG 2 cut(s) 111, 214
BssECI CCNNGG 1 cut(s) 406
BssMI GATC 2 cut(s) 229, 433
BssT1I CCWWGG 1 cut(s) 406
Bst2UI CCWGG 1 cut(s) 282
Bst4CI ACNGT 1 cut(s) 349
Bst6I CTCTTC 1 cut(s) 84
BstDEI CTNAG 3 cut(s) 138, 306, 429
BstEII GGTNACC 1 cut(s) 272
BstENI CCTNNNNNAGG 1 cut(s) 428
BstF5I GGATG 1 cut(s) 89
BstHHI GCGC 1 cut(s) 117
BstKTI GATC 2 cut(s) 232, 436
BstMAI GTCTC 2 cut(s) 16, 296
BstMBI GATC 2 cut(s) 229, 433
BstMWI GCNNNNNNNGC 3 cut(s) 107, 320, 500
BstNI CCWGG 1 cut(s) 282
BstNSI RCATGY 1 cut(s) 515
BstPI GGTNACC 1 cut(s) 272
BstSCI CCNGG 1 cut(s) 280
BstSFI CTRYAG 1 cut(s) 516
BstV1I GCAGC 4 cut(s) 113, 129, 370, 442
Bsu36I CCTNAGG 1 cut(s) 306
BsuRI GGCC 1 cut(s) 303
BtsCI GGATG 1 cut(s) 89
BtsIMutI CAGTG 2 cut(s) 345, 426
CfoI GCGC 1 cut(s) 117
Cfr13I GGNCC 1 cut(s) 302
Csp6I GTAC 1 cut(s) 439
CviAII CATG 5 cut(s) 200, 269, 356, 374, 512
CviJI RGCY 5 cut(s) 29, 171, 303, 314, 488
CviKI_1 RGCY 5 cut(s) 29, 171, 303, 314, 488
CviQI GTAC 1 cut(s) 439
DdeI CTNAG 3 cut(s) 138, 306, 429
DpnI GATC 2 cut(s) 231, 435
DpnII GATC 2 cut(s) 229, 433
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
Eco130I CCWWGG 1 cut(s) 406
Eco57I CTGAAG 1 cut(s) 267
Eco81I CCTNAGG 1 cut(s) 306
Eco91I GGTNACC 1 cut(s) 272
EcoNI CCTNNNNNAGG 1 cut(s) 428
EcoO109I RGGNCCY 1 cut(s) 302
EcoO65I GGTNACC 1 cut(s) 272
EcoRII CCWGG 1 cut(s) 280
EcoT14I CCWWGG 1 cut(s) 406
ErhI CCWWGG 1 cut(s) 406
Esp3I CGTCTC 1 cut(s) 296
FaeI CATG 5 cut(s) 203, 272, 359, 377, 515
FaiI YATR 9 cut(s) 33, 174, 201, 243, 261, 270, 357, 375, 513
FalI AAGNNNNNCTT 2 cut(s) 399, 431
FatI CATG 5 cut(s) 199, 268, 355, 373, 511
Fnu4HI GCNGC 4 cut(s) 102, 118, 384, 456
FokI GGATG 1 cut(s) 76
Fsp4HI GCNGC 4 cut(s) 102, 118, 384, 456
FspI TGCGCA 1 cut(s) 116
GlaI GCGC 1 cut(s) 116
GluI GCNGC 4 cut(s) 102, 118, 384, 456
HaeIII GGCC 1 cut(s) 303
HhaI GCGC 1 cut(s) 117
Hin1II CATG 5 cut(s) 203, 272, 359, 377, 515
Hin6I GCGC 1 cut(s) 115
HinP1I GCGC 1 cut(s) 115
HincII GTYRAC 2 cut(s) 352, 361
HindII GTYRAC 2 cut(s) 352, 361
HindIII AAGCTT 1 cut(s) 27
HinfI GANTC 3 cut(s) 4, 151, 463
HpaI GTTAAC 1 cut(s) 352
HphI GGTGA 1 cut(s) 31
Hpy166II GTNNAC 3 cut(s) 352, 361, 441
Hpy188I TCNGA 1 cut(s) 141
Hpy188III TCNNGA 1 cut(s) 233
Hpy8I GTNNAC 3 cut(s) 352, 361, 441
HpyAV CCTTC 1 cut(s) 24
HpyCH4III ACNGT 1 cut(s) 349
HpyCH4IV ACGT 2 cut(s) 331, 363
HpyCH4V TGCA 4 cut(s) 145, 219, 323, 503
HpyF10VI GCNNNNNNNGC 3 cut(s) 107, 320, 500
HpyF3I CTNAG 3 cut(s) 138, 306, 429
HpySE526I ACGT 2 cut(s) 331, 363
Hsp92II CATG 5 cut(s) 203, 272, 359, 377, 515
HspAI GCGC 1 cut(s) 115
KspAI GTTAAC 1 cut(s) 352
Kzo9I GATC 2 cut(s) 229, 433
LpnPI CCDG 4 cut(s) 106, 267, 294, 504
Lsp1109I GCAGC 4 cut(s) 113, 129, 370, 442
LweI GCATC 1 cut(s) 132
MaeII ACGT 2 cut(s) 331, 363
MaeIII GTNAC 2 cut(s) 272, 527
MalI GATC 2 cut(s) 231, 435
MboI GATC 2 cut(s) 229, 433
MboII GAAGA 2 cut(s) 62, 71
MluCI AATT 4 cut(s) 316, 340, 450, 477
MlyI GAGTC 1 cut(s) 457
MnlI CCTC 8 cut(s) 85, 149, 207, 288, 424, 434, 492, 526
MseI TTAA 1 cut(s) 351
MslI CAYNNNNRTG 1 cut(s) 378
MspR9I CCNGG 1 cut(s) 282
Mva1269I GAATGC 1 cut(s) 417
MvaI CCWGG 1 cut(s) 282
MwoI GCNNNNNNNGC 3 cut(s) 107, 320, 500
NdeII GATC 2 cut(s) 229, 433
NlaIII CATG 5 cut(s) 203, 272, 359, 377, 515
NlaIV GGNNCC 1 cut(s) 73
NsbI TGCGCA 1 cut(s) 116
NspI RCATGY 1 cut(s) 515
PctI GAATGC 1 cut(s) 417
PfeI GAWTC 2 cut(s) 4, 151
PkrI GCNGC 4 cut(s) 103, 119, 385, 457
PleI GAGTC 1 cut(s) 457
PpsI GAGTC 1 cut(s) 457
Psp6I CCWGG 1 cut(s) 280
PspEI GGTNACC 1 cut(s) 272
PspGI CCWGG 1 cut(s) 280
PspN4I GGNNCC 1 cut(s) 73
PspPI GGNCC 1 cut(s) 302
RsaI GTAC 1 cut(s) 440
RsaNI GTAC 1 cut(s) 439
RseI CAYNNNNRTG 1 cut(s) 378
SaqAI TTAA 1 cut(s) 351
SatI GCNGC 4 cut(s) 102, 118, 384, 456
Sau3AI GATC 2 cut(s) 229, 433
Sau96I GGNCC 1 cut(s) 302
SchI GAGTC 1 cut(s) 457
ScrFI CCNGG 1 cut(s) 282
SetI ASST 5 cut(s) 31, 316, 334, 366, 426
SfaNI GCATC 1 cut(s) 132
SfcI CTRYAG 1 cut(s) 516
SmiMI CAYNNNNRTG 1 cut(s) 378
SmlI CTYRAG 4 cut(s) 165, 177, 444, 483
SmoI CTYRAG 4 cut(s) 165, 177, 444, 483
Sse9I AATT 4 cut(s) 316, 340, 450, 477
SsiI CCGC 2 cut(s) 99, 110
StyD4I CCNGG 1 cut(s) 280
StyI CCWWGG 1 cut(s) 406
TaaI ACNGT 1 cut(s) 349
TaiI ACGT 2 cut(s) 334, 366
TaqI TCGA 2 cut(s) 154, 232
TasI AATT 4 cut(s) 316, 340, 450, 477
TatI WGTACW 1 cut(s) 438
TfiI GAWTC 2 cut(s) 4, 151
Tru1I TTAA 1 cut(s) 351
Tru9I TTAA 1 cut(s) 351
TscAI CASTG 2 cut(s) 352, 433
TseI GCWGC 4 cut(s) 101, 117, 383, 455
TspDTI ATGAA 2 cut(s) 17, 78
TspGWI ACGGA 1 cut(s) 182
TspRI CASTG 2 cut(s) 352, 433
XagI CCTNNNNNAGG 1 cut(s) 428
XapI RAATTY 2 cut(s) 340, 477
XceI RCATGY 1 cut(s) 515
XcmI CCANNNNNNNNNTGG 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.