MD11G1138200.v1.1

Reverse transcriptase (RNA-dependent DNA polymerase)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000106
Physical Location & Seq
Forward (+)
12742039 .. 12744657
2619 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1138200.v1.1.491

Sequence Viewer

Length: 1686 bp
ATGGCTGTGATGTCCTCAGCTCTAACATCTCTGATTCCACCGGACATTTCACTGCCTAGAGCAATGGTAGCACTGTCAGGTGAAATGCAGGTGAGTCTTCTGAACACAAGGTGCTCCGTTGGGATACCAACTTTTATTCCGTATTTGTCCCATCCACTGTTGCTTGCTGTAACAATTTGGTCGTGCCATGTATTAGCTTCTGGCTATGCCGTGTGGATTGTAGCACCTTGGATTTTGTGCCTTTTGTCTGGATTGCAGCGTGGATTCTTGTCTGCTGCTCTGCCGTGTGAATTGCAATTTTGGAACGAGAACTCTGTGTGTTTTCTTGCAGCGTGTGGTTCTATAATTGGTGTGGATATTCAGACCAAGGAGATAATTGGGCGTGGCACTAAGAGAGAGGGGTTATATTATGTGGATGATGTCGTTTCTGGCAGAGCTAATGCAGTTCGAGCATCCCGTACCAATAATTTACATGAAGTTTGGTTATTGCATCGTCGGTTAGGACATGCTTCGTTTGGGTATTTGAGGCGTATGTTGCCTAGTTTATTTCATAAAATAAAAGAATCAGACTTACATTGTGAGGTATGTATTCTCGCGAAGAGTCATCGCGTTTCGTTTCCTCCTAGTATGAATAGAAGATTGTTTCCTTTTGAACTTGTGCACTCTGATGTTTGGGGTCCCTCTCCTGTTAGTACTTTGTCTGGAATTAAATGGTTTGTTACCTTCGTTGATGATTGCACTCGTATGACTTGGATTTATGTGATGAAGAATAAAAGTGATGTGGGTATGGTGTTTCGATCATTCTCTCAAATTGTTACAACACAATATTCCTCTGTTATTAAGGTTCTCCGCTCTGATAATGGAGGTGAGTATATTGGGTCCGAGTTGTCCGGCTTTCTTCGGGATCAAGGAATTCTACATGAGACTACTTGCCCTCATACCCCACAACAAAATGGGGTTGCTGAAAGAAAGAACCGTCATATCCTGGAAACTGCTCGTGCCTTGCTCATTGGTGCATCTGTACCTAAACGGTTCTGGCCTGAAGCTATCACCTATGCCGTGTATGTGATTAACCGTATGCCATCCCGGGTTATGGATTTTCGTACACCTCTCCCAGTATTGACAGAATTTGTTCCAGTAGTATCAACTAATACTCTTTCTCCTCGTGTGTTTGGGTGTGTAGCCTATGTTCATATTCACAAGATTCATCGTAGTAAGCTCGATCCATGTGCTCACCGGTGTGTTTTTCTGGGCTTTGCTCCTCAACAGAAAGGGTATAAGTGCTACCACCCTGAAACTCATCATATGTATGTAACTATGGATGTTACCTTTTCTGAATGTGAGATCTTTTATGATTCGACTCCATCACCTTCCGATCACCAGGGGGAGAATATGAGTGGTGATCTTGGGTGGTTGGAAATATGTAGCTCAGGGGGAGTATTTATCGACAAAAACAGTTGTGAAAGCTCTCAGCAAGAAACTGCCGAGAATGTGAGTATCATTCAGCCAGGTAGCACCGAACCAGCTGAGTCTTCTCAACAACATATTGCCGAGTGCGATGTAGAGTGTCAGCAGGGAGTTGCCGAAACAGTTCCACCGCTCCAGCAACCATTAGCTACCGAACCCGCAACCCCCTCTCTCTCAAGCTCAATAGTGCCACCCAATGTCTTCTCTGAATATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve

Protein Analysis

562

Amino Acids

62.42

Weight (kDa)

6.49

Isoelectric Point (pI)

54.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
gag_pre-integrs PF13976 134 - 201 5.5e-14 GAG-pre-integrase domain
rve PF00665 216 - 315 4.5e-12 Integrase core domain
SH3_retrovirus PF25597 393 - 455 1e-22 Retroviral polymerase SH3-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20980 AT3G21000
fragaria_vesca FvH4_1g15931 FvH4_1g15931 FvH4_1g18381 FvH4_1g18382 FvH4_1g22571 FvH4_1g24950 FvH4_1g29372 FvH4_2g03582 FvH4_2g09851 FvH4_2g13112 FvH4_2g20843 FvH4_2g22701 FvH4_2g22702 FvH4_2g23403 FvH4_2g40201 FvH4_3g03542 FvH4_3g03543 FvH4_3g04761 FvH4_3g10464 FvH4_3g12741 FvH4_3g15781 FvH4_3g30981 FvH4_4g00985 FvH4_4g07035 FvH4_4g08192 FvH4_4g08211 FvH4_4g08553 FvH4_4g14242 FvH4_4g14243 FvH4_4g14641 FvH4_4g14843 FvH4_4g14844 FvH4_4g15061 FvH4_4g16281 FvH4_4g19152 FvH4_4g26451 FvH4_5g06442 FvH4_5g22521 FvH4_5g24301 FvH4_5g38641 FvH4_6g02393 FvH4_6g12782 FvH4_6g13871 FvH4_6g19391 FvH4_6g20105 FvH4_6g21292 FvH4_6g23581 FvH4_6g29153 FvH4_6g29691 FvH4_6g30871 FvH4_6g33351 FvH4_6g37042 FvH4_6g38781 FvH4_6g40340 FvH4_7g11221 FvH4_7g23352 FvH4_7g23352 FvH4_7g31212 FvH4_7g32172 FvH4_7g32173 FvH4_7g33701
malus_domestica MD03G1006900.v1.1 MD04G1039100.v1.1 MD04G1239100.v1.1 MD05G1048700.v1.1 MD08G1001800.v1.1 MD09G1165800.v1.1 MD11G1065200.v1.1 MD11G1138200.v1.1 MD14G1033300.v1.1 MD14G1173900.v1.1 MD15G1218200.v1.1 MD16G1034000.v1.1
prunus_persica Prupe.1G219500_v2.0.a1 Prupe.2G169400_v2.0.a1 Prupe.4G109700_v2.0.a1 Prupe.7G022000_v2.0.a1
pyrus_communis pycom01g02000 pycom02g13350 pycom03g01010 pycom04g05000 pycom04g06100 pycom05g05580 pycom05g09950 pycom05g13280 pycom05g26610 pycom06g05940 pycom06g07760 pycom07g06120 pycom07g24780 pycom08g08820 pycom09g03600 pycom09g07200 pycom10g01280 pycom10g06730 pycom10g08410 pycom10g25520 pycom11g00470 pycom11g05250 pycom11g25180 pycom12g08050 pycom13g14760 pycom13g28170 pycom15g14310 pycom15g19880 pycom15g24230 pycom15g33640 pycom16g02150 pycom16g16240 pycom16g20050 pycom16g21090 pycom17g06100
rosa_chinensis RchiOBHm_Chr1g0322161 RchiOBHm_Chr1g0326341 RchiOBHm_Chr1g0357701 RchiOBHm_Chr1g0379861 RchiOBHm_Chr1g0383421 RchiOBHm_Chr2g0093981 RchiOBHm_Chr2g0139051 RchiOBHm_Chr2g0145501 RchiOBHm_Chr3g0450971 RchiOBHm_Chr3g0451441 RchiOBHm_Chr3g0457411 RchiOBHm_Chr4g0436261 RchiOBHm_Chr5g0051431 RchiOBHm_Chr5g0064031 RchiOBHm_Chr5g0073141 RchiOBHm_Chr5g0080061 RchiOBHm_Chr7g0200561 RchiOBHm_Chr7g0235911
rosa_laevigata RLG00000000145 RLG00000000429 RLG00000020339 RLG00000035212
rosa_multiflora Rmu_co7977988.1_g000001 Rmu_co8037866.1_g000001 Rmu_co8243895.1_g000001 Rmu_co8363787.1_g000001 Rmu_co8381003.1_g000001 Rmu_sc0000263.1_g000006 Rmu_sc0000349.1_g000002 Rmu_sc0000455.1_g000031 Rmu_sc0000936.1_g000022 Rmu_sc0001035.1_g000023 Rmu_sc0001169.1_g000019 Rmu_sc0001250.1_g000026 Rmu_sc0002200.1_g000051 Rmu_sc0002230.1_g000027 Rmu_sc0002591.1_g000039 Rmu_sc0003182.1_g000003 Rmu_sc0003441.1_g000068 Rmu_sc0003722.1_g000018 Rmu_sc0003764.1_g000007 Rmu_sc0006014.1_g000016 Rmu_sc0012582.1_g000002 Rmu_sc0013519.1_g000002 Rmu_sc0014550.1_g000005 Rmu_sc0014857.1_g000007 Rmu_sc0019855.1_g000001 Rmu_sc0030839.1_g000001 Rmu_sc0031308.1_g000001
rosa_roxburghii Rroxscaffold_1G00011290 Rroxscaffold_1G00041340 Rroxscaffold_1G00053780 Rroxscaffold_1G00059130 Rroxscaffold_1G00061580 Rroxscaffold_2G00080940 Rroxscaffold_2G00109540 Rroxscaffold_3G00228400 Rroxscaffold_3G00237710 Rroxscaffold_4G00285210 Rroxscaffold_4G00299600 Rroxscaffold_4G00324940 Rroxscaffold_4G00330580 Rroxscaffold_5G00333000 Rroxscaffold_5G00347920 Rroxscaffold_5G00375310 Rroxscaffold_6G00394760 Rroxscaffold_6G00406260 Rroxscaffold_7G00165690 Rroxscaffold_7G00187680
rosa_rugosa Rorug01G0050200 Rorug02G0273800 Rorug06G0490600 Rorug06G0490600 Rorug06G0490700
rosa_samantha Rh1AG348400 Rh5AG222600 Rh6DG000500 Rh6DG194500 Rh7BG452700
rosa_wichuraiana Rw0G003060 Rw0G010530 Rw0G012970 Rw0G022560 Rw0G023390 Rw1G001270 Rw1G001530 Rw1G006070 Rw1G008210 Rw1G022090 Rw1G023320 Rw2G003790 Rw2G004140 Rw2G005280 Rw2G006460 Rw2G019620 Rw2G019840 Rw2G022530 Rw2G023280 Rw2G024990 Rw2G042380 Rw2G051390 Rw3G001640 Rw3G016720 Rw3G017100 Rw3G020890 Rw3G020900 Rw3G021100 Rw4G004820 Rw4G014950 Rw4G030920 Rw4G031400 Rw5G008500 Rw5G017950 Rw5G020170 Rw5G030160 Rw5G033050 Rw5G034640 Rw5G043920 Rw6G005060 Rw6G005540 Rw6G006720 Rw6G008460 Rw6G008670 Rw6G014780 Rw6G019100 Rw6G019350 Rw6G026310 Rw7G016810 Rw7G019180 Rw7G022890 Rw7G025880 Rw7G026390 Rw7G028340 Rw7G034850 Rw7G035170 Rw7G035420 Rw7G037990 Rw7G041560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 79
Acc36I ACCTGC 1 cut(s) 79
AccBSI CCGCTC 2 cut(s) 852, 1600
AccII CGCG 2 cut(s) 596, 609
AciI CCGC 3 cut(s) 850, 1598, 1626
AclWI GGATC 2 cut(s) 912, 1217
AcsI RAATTY 2 cut(s) 912, 1127
AcuI CTGAAG 1 cut(s) 1062
AdeI CACNNNGTG 1 cut(s) 111
AfaI GTAC 4 cut(s) 460, 694, 1023, 1105
AfiI CCNNNNNNNGG 1 cut(s) 1093
AgeI ACCGGT 1 cut(s) 1236
AgsI TTSAA 1 cut(s) 653
AjnI CCWGG 3 cut(s) 984, 1380, 1507
AleI CACNNNNGTG 1 cut(s) 1239
Alw21I GWGCWC 3 cut(s) 116, 663, 1234
Alw26I GTCTC 1 cut(s) 917
Alw44I GTGCAC 1 cut(s) 659
AlwI GGATC 2 cut(s) 912, 1217
Ama87I CYCGRG 1 cut(s) 1086
AoxI GGCC 1 cut(s) 1037
ApaLI GTGCAC 1 cut(s) 659
ApeKI GCWGC 3 cut(s) 256, 275, 329
ApoI RAATTY 2 cut(s) 912, 1127
AsiGI ACCGGT 1 cut(s) 1236
Asp700I GAANNNNTTC 2 cut(s) 1131, 1590
AspS9I GGNCC 2 cut(s) 677, 879
AsuC2I CCSGG 2 cut(s) 1087, 1088
AsuHPI GGTGA 8 cut(s) 92, 103, 878, 1042, 1226, 1359, 1370, 1412
AvaI CYCGRG 1 cut(s) 1086
AvaII GGWCC 2 cut(s) 677, 879
BaeGI GKGCMC 1 cut(s) 663
BauI CACGAG 2 cut(s) 996, 1164
BbsI GAAGAC 3 cut(s) 89, 1524, 1660
Bbv12I GWGCWC 3 cut(s) 116, 663, 1234
BbvCI CCTCAGC 1 cut(s) 16
BbvI GCAGC 3 cut(s) 262, 268, 341
BccI CCATC 3 cut(s) 159, 1090, 1372
BceAI ACGGC 3 cut(s) 194, 268, 1043
BcgI CGANNNNNNTGC 2 cut(s) 1211, 1245
BciT130I CCWGG 3 cut(s) 986, 1382, 1509
BciVI GTATCC 1 cut(s) 117
BcnI CCSGG 2 cut(s) 1087, 1088
BcoDI GTCTC 1 cut(s) 917
BfaI CTAG 3 cut(s) 57, 540, 624
BfuAI ACCTGC 1 cut(s) 79
BfuI GTATCC 1 cut(s) 117
BglII AGATCT 1 cut(s) 1344
BisI GCNGC 3 cut(s) 257, 276, 330
BlsI GCNGC 3 cut(s) 258, 277, 331
BmcAI AGTACT 1 cut(s) 694
Bme1390I CCNGG 5 cut(s) 986, 1087, 1088, 1382, 1509
Bme18I GGWCC 2 cut(s) 677, 879
BmeT110I CYCGRG 1 cut(s) 1086
BmgT120I GGNCC 2 cut(s) 677, 879
BmiI GGNNCC 3 cut(s) 678, 679, 880
BmrFI CCNGG 5 cut(s) 986, 1087, 1088, 1382, 1509
BmrI ACTGGG 1 cut(s) 1109
BmsI GCATC 3 cut(s) 461, 499, 1025
BmuI ACTGGG 1 cut(s) 1109
BpiI GAAGAC 3 cut(s) 89, 1524, 1660
BpmI CTGGAG 1 cut(s) 1586
Bpu10I CCTNAGC 2 cut(s) 16, 1429
BpuEI CTTGAG 1 cut(s) 1627
BpuMI CCSGG 2 cut(s) 1087, 1088
BsaJI CCNNGG 4 cut(s) 227, 366, 1086, 1381
BsaWI WCCGGW 2 cut(s) 40, 1236
BsaXI ACNNNNNCTCC 2 cut(s) 1144, 1174
Bsc4I CCNNNNNNNGG 1 cut(s) 1093
Bse118I RCCGGY 1 cut(s) 1236
Bse1I ACTGG 2 cut(s) 1115, 1136
Bse3DI GCAATG 1 cut(s) 69
BseBI CCWGG 3 cut(s) 986, 1382, 1509
BseDI CCNNGG 4 cut(s) 227, 366, 1086, 1381
BseGI GGATG 5 cut(s) 151, 421, 452, 1082, 1327
BseLI CCNNNNNNNGG 1 cut(s) 1093
BseMI GCAATG 1 cut(s) 69
BseMII CTCAG 4 cut(s) 30, 1443, 1484, 1518
BseNI ACTGG 2 cut(s) 1115, 1136
BseRI GAGGAG 2 cut(s) 1152, 1251
BseSI GKGCMC 1 cut(s) 663
BseXI GCAGC 3 cut(s) 262, 268, 341
Bsh1236I CGCG 2 cut(s) 596, 609
BshFI GGCC 1 cut(s) 1039
BshTI ACCGGT 1 cut(s) 1236
BsiHKAI GWGCWC 3 cut(s) 116, 663, 1234
BsiHKCI CYCGRG 1 cut(s) 1086
BsiSI CCGG 4 cut(s) 41, 891, 1087, 1237
BslFI GGGAC 2 cut(s) 133, 663
BslI CCNNNNNNNGG 1 cut(s) 1093
BsmAI GTCTC 1 cut(s) 917
BsmFI GGGAC 2 cut(s) 133, 663
BsnI GGCC 1 cut(s) 1039
BsoBI CYCGRG 1 cut(s) 1086
Bsp1286I GDGCHC 3 cut(s) 116, 663, 1234
Bsp143I GATC 6 cut(s) 797, 904, 1222, 1344, 1375, 1402
Bsp68I TCGCGA 1 cut(s) 596
BspACI CCGC 3 cut(s) 850, 1598, 1626
BspANI GGCC 1 cut(s) 1039
BspCNI CTCAG 4 cut(s) 29, 1442, 1483, 1519
BspFNI CGCG 2 cut(s) 596, 609
BspLI GGNNCC 3 cut(s) 678, 679, 880
BspMI ACCTGC 1 cut(s) 79
BspPI GGATC 2 cut(s) 912, 1217
BsrBI CCGCTC 2 cut(s) 852, 1600
BsrDI GCAATG 1 cut(s) 69
BsrFI RCCGGY 1 cut(s) 1236
BsrI ACTGG 2 cut(s) 1115, 1136
BssAI RCCGGY 1 cut(s) 1236
BssECI CCNNGG 4 cut(s) 227, 366, 1086, 1381
BssMI GATC 6 cut(s) 797, 904, 1222, 1344, 1375, 1402
BssSI CACGAG 2 cut(s) 996, 1164
BssT1I CCWWGG 2 cut(s) 227, 366
Bst2BI CACGAG 2 cut(s) 996, 1164
Bst2UI CCWGG 3 cut(s) 986, 1382, 1509
Bst4CI ACNGT 7 cut(s) 75, 159, 977, 1032, 1076, 1457, 1591
Bst6I CTCTTC 1 cut(s) 593
BstC8I GCNNGC 1 cut(s) 165
BstDEI CTNAG 5 cut(s) 16, 390, 1429, 1470, 1527
BstF5I GGATG 5 cut(s) 151, 421, 452, 1082, 1327
BstFNI CGCG 2 cut(s) 596, 609
BstKTI GATC 6 cut(s) 800, 907, 1225, 1347, 1378, 1405
BstMAI GTCTC 1 cut(s) 917
BstMBI GATC 6 cut(s) 797, 904, 1222, 1344, 1375, 1402
BstMWI GCNNNNNNNGC 3 cut(s) 68, 449, 535
BstNI CCWGG 3 cut(s) 986, 1382, 1509
BstNSI RCATGY 1 cut(s) 509
BstSCI CCNGG 5 cut(s) 984, 1085, 1086, 1380, 1507
BstSLI GKGCMC 1 cut(s) 663
BstUI CGCG 2 cut(s) 596, 609
BstV1I GCAGC 3 cut(s) 262, 268, 341
BstV2I GAAGAC 3 cut(s) 89, 1524, 1660
BstX2I RGATCY 1 cut(s) 1344
BstYI RGATCY 1 cut(s) 1344
BsuI GTATCC 1 cut(s) 117
BsuRI GGCC 1 cut(s) 1039
BtgZI GCGATG 2 cut(s) 590, 1572
BtsCI GGATG 5 cut(s) 151, 421, 452, 1082, 1327
BtsI GCAGTG 1 cut(s) 50
BtsIMutI CAGTG 3 cut(s) 50, 71, 155
BtuMI TCGCGA 1 cut(s) 596
BveI ACCTGC 1 cut(s) 79
Cac8I GCNNGC 1 cut(s) 165
Cfr10I RCCGGY 1 cut(s) 1236
Cfr13I GGNCC 2 cut(s) 677, 879
Cfr9I CCCGGG 1 cut(s) 1086
Csp6I GTAC 4 cut(s) 459, 693, 1022, 1104
CspAI ACCGGT 1 cut(s) 1236
CviAII CATG 5 cut(s) 188, 473, 506, 920, 1227
CviQI GTAC 4 cut(s) 459, 693, 1022, 1104
DdeI CTNAG 5 cut(s) 16, 390, 1429, 1470, 1527
DpnI GATC 6 cut(s) 799, 906, 1224, 1346, 1377, 1404
DpnII GATC 6 cut(s) 797, 904, 1222, 1344, 1375, 1402
DraIII CACNNNGTG 1 cut(s) 111
Eam1104I CTCTTC 1 cut(s) 593
EarI CTCTTC 1 cut(s) 593
Eco130I CCWWGG 2 cut(s) 227, 366
Eco47I GGWCC 2 cut(s) 677, 879
Eco57I CTGAAG 1 cut(s) 1062
Eco88I CYCGRG 1 cut(s) 1086
EcoO109I RGGNCCY 1 cut(s) 677
EcoRI GAATTC 1 cut(s) 912
EcoRII CCWGG 3 cut(s) 984, 1380, 1507
EcoT14I CCWWGG 2 cut(s) 227, 366
ErhI CCWWGG 2 cut(s) 227, 366
FaeI CATG 5 cut(s) 191, 476, 509, 923, 1230
FaqI GGGAC 2 cut(s) 133, 663
FatI CATG 5 cut(s) 187, 472, 505, 919, 1226
FauI CCCGC 1 cut(s) 1633
FauNDI CATATG 1 cut(s) 1305
Fnu4HI GCNGC 3 cut(s) 257, 276, 330
FokI GGATG 5 cut(s) 138, 428, 439, 1069, 1334
Fsp4HI GCNGC 3 cut(s) 257, 276, 330
FspBI CTAG 3 cut(s) 57, 540, 624
GluI GCNGC 3 cut(s) 257, 276, 330
GsuI CTGGAG 1 cut(s) 1586
HaeIII GGCC 1 cut(s) 1039
HapII CCGG 4 cut(s) 41, 891, 1087, 1237
Hin1II CATG 5 cut(s) 191, 476, 509, 923, 1230
HinfI GANTC 9 cut(s) 34, 94, 264, 563, 601, 1204, 1355, 1360, 1529
HpaII CCGG 4 cut(s) 41, 891, 1087, 1237
HphI GGTGA 8 cut(s) 92, 103, 878, 1042, 1226, 1359, 1370, 1412
Hpy166II GTNNAC 2 cut(s) 661, 1106
Hpy188III TCNNGA 4 cut(s) 249, 595, 702, 902
Hpy8I GTNNAC 2 cut(s) 661, 1106
Hpy99I CGWCG 1 cut(s) 498
HpyAV CCTTC 2 cut(s) 733, 1380
HpyCH4III ACNGT 7 cut(s) 75, 159, 977, 1032, 1076, 1457, 1591
HpyCH4V TGCA 9 cut(s) 88, 256, 295, 329, 443, 490, 661, 738, 1016
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 449, 535
HpyF3I CTNAG 5 cut(s) 16, 390, 1429, 1470, 1527
Hsp92II CATG 5 cut(s) 191, 476, 509, 923, 1230
KflI GGGWCCC 1 cut(s) 677
Kzo9I GATC 6 cut(s) 797, 904, 1222, 1344, 1375, 1402
LmnI GCTCC 3 cut(s) 119, 1264, 1605
Lsp1109I GCAGC 3 cut(s) 262, 268, 341
LweI GCATC 3 cut(s) 461, 499, 1025
MaeI CTAG 3 cut(s) 57, 540, 624
MaeIII GTNAC 5 cut(s) 169, 718, 814, 1312, 1324
MalI GATC 6 cut(s) 799, 906, 1224, 1346, 1377, 1404
MbiI CCGCTC 2 cut(s) 852, 1600
MboI GATC 6 cut(s) 797, 904, 1222, 1344, 1375, 1402
MboII GAAGA 7 cut(s) 89, 610, 648, 778, 890, 1524, 1660
MflI RGATCY 1 cut(s) 1344
MhlI GDGCHC 3 cut(s) 116, 663, 1234
MlyI GAGTC 4 cut(s) 103, 610, 1354, 1538
MmeI TCCRAC 1 cut(s) 1395
MroXI GAANNNNTTC 2 cut(s) 1131, 1590
MseI TTAA 3 cut(s) 708, 840, 1071
MslI CAYNNNNRTG 4 cut(s) 666, 743, 1239, 1308
MspA1I CMGCKG 1 cut(s) 1526
MspI CCGG 4 cut(s) 41, 891, 1087, 1237
MspR9I CCNGG 5 cut(s) 986, 1087, 1088, 1382, 1509
MvaI CCWGG 3 cut(s) 986, 1382, 1509
MvnI CGCG 2 cut(s) 596, 609
MwoI GCNNNNNNNGC 3 cut(s) 68, 449, 535
NciI CCSGG 2 cut(s) 1087, 1088
NdeI CATATG 1 cut(s) 1305
NdeII GATC 6 cut(s) 797, 904, 1222, 1344, 1375, 1402
NlaIII CATG 5 cut(s) 191, 476, 509, 923, 1230
NlaIV GGNNCC 3 cut(s) 678, 679, 880
NmeAIII GCCGAG 2 cut(s) 1510, 1576
NruI TCGCGA 1 cut(s) 596
NspI RCATGY 1 cut(s) 509
OliI CACNNNNGTG 1 cut(s) 1239
PaqCI CACCTGC 1 cut(s) 79
PcsI WCGNNNNNNNCGW 1 cut(s) 454
PdmI GAANNNNTTC 2 cut(s) 1131, 1590
PfeI GAWTC 5 cut(s) 34, 264, 563, 1204, 1355
PfoI TCCNGGA 1 cut(s) 984
PinAI ACCGGT 1 cut(s) 1236
PkrI GCNGC 3 cut(s) 258, 277, 331
PleI GAGTC 4 cut(s) 102, 609, 1354, 1537
PpsI GAGTC 4 cut(s) 102, 609, 1354, 1537
PpuMI RGGWCCY 1 cut(s) 677
Psp5II RGGWCCY 1 cut(s) 677
Psp6I CCWGG 3 cut(s) 984, 1380, 1507
PspGI CCWGG 3 cut(s) 984, 1380, 1507
PspN4I GGNNCC 3 cut(s) 678, 679, 880
PspPI GGNCC 2 cut(s) 677, 879
PspPPI RGGWCCY 1 cut(s) 677
PsrI GAACNNNNNNTAC 2 cut(s) 1173, 1205
PsuI RGATCY 1 cut(s) 1344
PvuII CAGCTG 1 cut(s) 1526
RruI TCGCGA 1 cut(s) 596
RsaI GTAC 4 cut(s) 460, 694, 1023, 1105
RsaNI GTAC 4 cut(s) 459, 693, 1022, 1104
RseI CAYNNNNRTG 4 cut(s) 666, 743, 1239, 1308
SaqAI TTAA 3 cut(s) 708, 840, 1071
SatI GCNGC 3 cut(s) 257, 276, 330
Sau3AI GATC 6 cut(s) 797, 904, 1222, 1344, 1375, 1402
Sau96I GGNCC 2 cut(s) 677, 879
ScaI AGTACT 1 cut(s) 694
SchI GAGTC 4 cut(s) 103, 610, 1354, 1538
ScrFI CCNGG 5 cut(s) 986, 1087, 1088, 1382, 1509
SduI GDGCHC 3 cut(s) 116, 663, 1234
SfaNI GCATC 3 cut(s) 461, 499, 1025
SgrAI CRCCGGYG 1 cut(s) 1236
SinI GGWCC 2 cut(s) 677, 879
SmaI CCCGGG 1 cut(s) 1088
SmiMI CAYNNNNRTG 4 cut(s) 666, 743, 1239, 1308
SmlI CTYRAG 1 cut(s) 1642
SmoI CTYRAG 1 cut(s) 1642
SsiI CCGC 3 cut(s) 850, 1598, 1626
SspI AATATT 2 cut(s) 827, 1679
SspMI CTAG 3 cut(s) 57, 540, 624
StyD4I CCNGG 5 cut(s) 984, 1085, 1086, 1380, 1507
StyI CCWWGG 2 cut(s) 227, 366
TaaI ACNGT 7 cut(s) 75, 159, 977, 1032, 1076, 1457, 1591
TaqI TCGA 5 cut(s) 448, 796, 1221, 1358, 1446
TatI WGTACW 1 cut(s) 692
TfiI GAWTC 5 cut(s) 34, 264, 563, 1204, 1355
Tru1I TTAA 3 cut(s) 708, 840, 1071
Tru9I TTAA 3 cut(s) 708, 840, 1071
TscAI CASTG 3 cut(s) 57, 78, 162
TseI GCWGC 3 cut(s) 256, 275, 329
TspDTI ATGAA 6 cut(s) 489, 539, 644, 779, 1181, 1196
TspGWI ACGGA 2 cut(s) 106, 129
TspMI CCCGGG 1 cut(s) 1086
TspRI CASTG 3 cut(s) 57, 78, 162
VneI GTGCAC 1 cut(s) 659
VpaK11BI GGWCC 2 cut(s) 677, 879
XapI RAATTY 2 cut(s) 912, 1127
XceI RCATGY 1 cut(s) 509
XmaI CCCGGG 1 cut(s) 1086
XmnI GAANNNNTTC 2 cut(s) 1131, 1590
XspI CTAG 3 cut(s) 57, 540, 624
ZrmI AGTACT 1 cut(s) 694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.