Rw0G003060

gag-polypeptide of LTR copia-type

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00100
OG0000106
Physical Location & Seq
Reverse (-)
14505 .. 15899
1395 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G003060.1

Sequence Viewer

Length: 1395 bp
ATGGTGTTGTTAAAATCCTTGGACATATGGAACGTCGTCGAAGATGGTTACGTTCAACCAGAAAATGAAGGTGCATTAACACAACCACAGAGGAATGTTTTAAAGGAGAATCGAAAGAAGGATAGCAAGGCACTCTTCTATATCTACCAGACAATTGATATGTCTGTATATGAAAGAATTGCTCAAGCTGCGACTTCCAAGGAAGCCTGGGACATCATTCATGTAGCCTACAAAGGCAAAGAAAAGGTGAAAATGGTTCGTCTTCAGACTCTAAGATCGGAGTTCGAAAAGTTGGAGATGAAGGAGACTGAAAGCATCAAGGAGTATTTTACAAGAGTCAACTCTGTGGTTAATAAAATGGCTTCAAATGGAGAGATTTTACAAGATACAAGGGTGGTTGAAAAAGTTCTTCGAAGCTTGTTACCAAAGTTTGATTATGTTGAAGCTGCTATTGAAGAATCAACAGATTTGTCTACTCTCACTCTGGATGACTTGCAAGGAAGATTGGAAGCTCATGAGTTTAAGATTAATAAGAGGAAACCTGCCTCTTCTCAACCAGATCAAGCACTCAAGTCTCAAGTCGTATCTACGGGAGGCAATTGGAATCATGGTCACAGATCTCCACATTGGAATGGAAGAGATGATAGAGCAAGAGGAGAGGAAGAGTTTAATTCTCGTGGAAGAGGTTATTTTCAAAGAATTGGAAGAGGCTTGGCGAGCAATCAATATGAAGGTGACAAGAATACAGACACCACGTTTCCAAGTAGAGGAAGAGGTCGTGGCTACTATCATGGAAGAGGACGTTCTGGAGGTTCTTATTATCATAAACCAGGTCATGTCAAGCGAAATTACTGGTCCATGCAAGAAGATGACAAGCAAGTCGGAGCTGGTTTTATGCATGAAAGCAACATTGGAAACTATGAGCAAGACACTTTATTAGTCGCAGCATGCCATGGAAACTACATGGAGGAGGTGTGGTACCTTGATAGTGGAGCTAGCAAGCATATGACAGGTAACAAGAATCTTTTCTCCACTCTCAAACTGATAGATCATGGTGAAGTAACAATTGGTGATGCTAAAGCTTACAAAATAGAAGGGGTTGGAGAAATCACATTTAAATCAAAGTCTGGAAGCATTGAAAAGATGTCAGAAGTTTATTATGTTCCTGGATTAAAAAGCAATTTGTTAAGTGCTGGGCATCTCTTGAGGAGAGGATATGATATTCATTTTCATGATAATGCTTTTTCTTGTCAAAGAAAGATCAACTTATTGCAAAGATTGGAGTGGCTGGAAATAATCTATTCCCTCTCAAGCTTGAAACAACAAATCTATCATGCTTTGTTGGTCGTAAGAAATGAGCTTCCAGGTTATGGCATGACAGATTTGGTCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4219 Retrotran_gag_2 zf-CCHC

Protein Analysis

464

Amino Acids

53.01

Weight (kDa)

8.46

Isoelectric Point (pI)

44.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 3 - 178 2.1e-29 gag-polypeptide of LTR copia-type
Pol_BBD PF22936 326 - 406 6.1e-27 Pol polyprotein, beta-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20980 AT3G21000
fragaria_vesca FvH4_1g15931 FvH4_1g15931 FvH4_1g18381 FvH4_1g18382 FvH4_1g22571 FvH4_1g24950 FvH4_1g29372 FvH4_2g03582 FvH4_2g09851 FvH4_2g13112 FvH4_2g20843 FvH4_2g22701 FvH4_2g22702 FvH4_2g23403 FvH4_2g40201 FvH4_3g03542 FvH4_3g03543 FvH4_3g04761 FvH4_3g10464 FvH4_3g12741 FvH4_3g15781 FvH4_3g30981 FvH4_4g00985 FvH4_4g07035 FvH4_4g08192 FvH4_4g08211 FvH4_4g08553 FvH4_4g14242 FvH4_4g14243 FvH4_4g14641 FvH4_4g14843 FvH4_4g14844 FvH4_4g15061 FvH4_4g16281 FvH4_4g19152 FvH4_4g26451 FvH4_5g06442 FvH4_5g22521 FvH4_5g24301 FvH4_5g38641 FvH4_6g02393 FvH4_6g12782 FvH4_6g13871 FvH4_6g19391 FvH4_6g20105 FvH4_6g21292 FvH4_6g23581 FvH4_6g29153 FvH4_6g29691 FvH4_6g30871 FvH4_6g33351 FvH4_6g37042 FvH4_6g38781 FvH4_6g40340 FvH4_7g11221 FvH4_7g23352 FvH4_7g23352 FvH4_7g31212 FvH4_7g32172 FvH4_7g32173 FvH4_7g33701
malus_domestica MD03G1006900.v1.1 MD04G1039100.v1.1 MD04G1239100.v1.1 MD05G1048700.v1.1 MD08G1001800.v1.1 MD09G1165800.v1.1 MD11G1065200.v1.1 MD11G1138200.v1.1 MD14G1033300.v1.1 MD14G1173900.v1.1 MD15G1218200.v1.1 MD16G1034000.v1.1
prunus_persica Prupe.1G219500_v2.0.a1 Prupe.2G169400_v2.0.a1 Prupe.4G109700_v2.0.a1 Prupe.7G022000_v2.0.a1
pyrus_communis pycom01g02000 pycom02g13350 pycom03g01010 pycom04g05000 pycom04g06100 pycom05g05580 pycom05g09950 pycom05g13280 pycom05g26610 pycom06g05940 pycom06g07760 pycom07g06120 pycom07g24780 pycom08g08820 pycom09g03600 pycom09g07200 pycom10g01280 pycom10g06730 pycom10g08410 pycom10g25520 pycom11g00470 pycom11g05250 pycom11g25180 pycom12g08050 pycom13g14760 pycom13g28170 pycom15g14310 pycom15g19880 pycom15g24230 pycom15g33640 pycom16g02150 pycom16g16240 pycom16g20050 pycom16g21090 pycom17g06100
rosa_chinensis RchiOBHm_Chr1g0322161 RchiOBHm_Chr1g0326341 RchiOBHm_Chr1g0357701 RchiOBHm_Chr1g0379861 RchiOBHm_Chr1g0383421 RchiOBHm_Chr2g0093981 RchiOBHm_Chr2g0139051 RchiOBHm_Chr2g0145501 RchiOBHm_Chr3g0450971 RchiOBHm_Chr3g0451441 RchiOBHm_Chr3g0457411 RchiOBHm_Chr4g0436261 RchiOBHm_Chr5g0051431 RchiOBHm_Chr5g0064031 RchiOBHm_Chr5g0073141 RchiOBHm_Chr5g0080061 RchiOBHm_Chr7g0200561 RchiOBHm_Chr7g0235911
rosa_laevigata RLG00000000145 RLG00000000429 RLG00000020339 RLG00000035212
rosa_multiflora Rmu_co7977988.1_g000001 Rmu_co8037866.1_g000001 Rmu_co8243895.1_g000001 Rmu_co8363787.1_g000001 Rmu_co8381003.1_g000001 Rmu_sc0000263.1_g000006 Rmu_sc0000349.1_g000002 Rmu_sc0000455.1_g000031 Rmu_sc0000936.1_g000022 Rmu_sc0001035.1_g000023 Rmu_sc0001169.1_g000019 Rmu_sc0001250.1_g000026 Rmu_sc0002200.1_g000051 Rmu_sc0002230.1_g000027 Rmu_sc0002591.1_g000039 Rmu_sc0003182.1_g000003 Rmu_sc0003441.1_g000068 Rmu_sc0003722.1_g000018 Rmu_sc0003764.1_g000007 Rmu_sc0006014.1_g000016 Rmu_sc0012582.1_g000002 Rmu_sc0013519.1_g000002 Rmu_sc0014550.1_g000005 Rmu_sc0014857.1_g000007 Rmu_sc0019855.1_g000001 Rmu_sc0030839.1_g000001 Rmu_sc0031308.1_g000001
rosa_roxburghii Rroxscaffold_1G00011290 Rroxscaffold_1G00041340 Rroxscaffold_1G00053780 Rroxscaffold_1G00059130 Rroxscaffold_1G00061580 Rroxscaffold_2G00080940 Rroxscaffold_2G00109540 Rroxscaffold_3G00228400 Rroxscaffold_3G00237710 Rroxscaffold_4G00285210 Rroxscaffold_4G00299600 Rroxscaffold_4G00324940 Rroxscaffold_4G00330580 Rroxscaffold_5G00333000 Rroxscaffold_5G00347920 Rroxscaffold_5G00375310 Rroxscaffold_6G00394760 Rroxscaffold_6G00406260 Rroxscaffold_7G00165690 Rroxscaffold_7G00187680
rosa_rugosa Rorug01G0050200 Rorug02G0273800 Rorug06G0490600 Rorug06G0490600 Rorug06G0490700
rosa_samantha Rh1AG348400 Rh5AG222600 Rh6DG000500 Rh6DG194500 Rh7BG452700
rosa_wichuraiana Rw0G003060 Rw0G010530 Rw0G012970 Rw0G022560 Rw0G023390 Rw1G001270 Rw1G001530 Rw1G006070 Rw1G008210 Rw1G022090 Rw1G023320 Rw2G003790 Rw2G004140 Rw2G005280 Rw2G006460 Rw2G019620 Rw2G019840 Rw2G022530 Rw2G023280 Rw2G024990 Rw2G042380 Rw2G051390 Rw3G001640 Rw3G016720 Rw3G017100 Rw3G020890 Rw3G020900 Rw3G021100 Rw4G004820 Rw4G014950 Rw4G030920 Rw4G031400 Rw5G008500 Rw5G017950 Rw5G020170 Rw5G030160 Rw5G033050 Rw5G034640 Rw5G043920 Rw6G005060 Rw6G005540 Rw6G006720 Rw6G008460 Rw6G008670 Rw6G014780 Rw6G019100 Rw6G019350 Rw6G026310 Rw7G016810 Rw7G019180 Rw7G022890 Rw7G025880 Rw7G026390 Rw7G028340 Rw7G034850 Rw7G035170 Rw7G035420 Rw7G037990 Rw7G041560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 878
Acc36I ACCTGC 1 cut(s) 550
Acc65I GGTACC 1 cut(s) 978
AccB1I GGYRCC 1 cut(s) 978
AccB7I CCANNNNNTGG 1 cut(s) 1370
AccI GTMKAC 1 cut(s) 473
AcuI CTGAAG 1 cut(s) 248
AfaI GTAC 1 cut(s) 980
AfiI CCNNNNNNNGG 2 cut(s) 767, 1370
AgsI TTSAA 8 cut(s) 56, 366, 401, 443, 455, 695, 1139, 1318
AjnI CCWGG 4 cut(s) 206, 829, 1165, 1363
AjuI GAANNNNNNNTTGG 4 cut(s) 894, 926, 1050, 1082
AluBI AGCT 9 cut(s) 188, 417, 446, 512, 887, 995, 1082, 1314, 1360
AluI AGCT 9 cut(s) 188, 417, 446, 512, 887, 995, 1082, 1314, 1360
Alw26I GTCTC 2 cut(s) 299, 579
ApeKI GCWGC 3 cut(s) 188, 446, 944
AseI ATTAAT 1 cut(s) 528
Asp700I GAANNNNTTC 2 cut(s) 405, 1025
Asp718I GGTACC 1 cut(s) 978
AspS9I GGNCC 1 cut(s) 855
AsuHPI GGTGA 4 cut(s) 259, 746, 1067, 1082
AsuII TTCGAA 2 cut(s) 285, 412
AsuNHI GCTAGC 1 cut(s) 995
AvaII GGWCC 1 cut(s) 855
BaeI ACNNNNGTAYC 2 cut(s) 378, 411
BanI GGYRCC 1 cut(s) 978
BauI CACGAG 1 cut(s) 675
BbsI GAAGAC 1 cut(s) 254
BbvI GCAGC 3 cut(s) 175, 433, 956
BccI CCATC 1 cut(s) 38
BciT130I CCWGG 4 cut(s) 208, 831, 1167, 1365
BcoDI GTCTC 2 cut(s) 299, 579
BfaI CTAG 1 cut(s) 996
BfuAI ACCTGC 1 cut(s) 550
BglII AGATCT 1 cut(s) 617
BisI GCNGC 3 cut(s) 189, 447, 945
BlsI GCNGC 3 cut(s) 190, 448, 946
Bme1390I CCNGG 4 cut(s) 208, 831, 1167, 1365
Bme18I GGWCC 1 cut(s) 855
BmgT120I GGNCC 1 cut(s) 855
BmiI GGNNCC 1 cut(s) 980
BmrFI CCNGG 4 cut(s) 208, 831, 1167, 1365
BmsI GCATC 3 cut(s) 324, 1063, 1207
BmtI GCTAGC 1 cut(s) 999
BpiI GAAGAC 1 cut(s) 254
BpmI CTGGAG 1 cut(s) 828
Bpu14I TTCGAA 2 cut(s) 285, 412
BpuEI CTTGAG 5 cut(s) 168, 554, 561, 1225, 1294
BsaJI CCNNGG 4 cut(s) 18, 198, 207, 952
BsaXI ACNNNNNCTCC 4 cut(s) 959, 962, 989, 992
Bsc4I CCNNNNNNNGG 2 cut(s) 767, 1370
Bse1I ACTGG 1 cut(s) 857
BseBI CCWGG 4 cut(s) 208, 831, 1167, 1365
BseDI CCNNGG 4 cut(s) 18, 198, 207, 952
BseGI GGATG 1 cut(s) 493
BseLI CCNNNNNNNGG 2 cut(s) 767, 1370
BseNI ACTGG 1 cut(s) 857
BseRI GAGGAG 3 cut(s) 669, 983, 1222
BseXI GCAGC 3 cut(s) 175, 433, 956
BseYI CCCAGC 1 cut(s) 1193
BshNI GGYRCC 1 cut(s) 978
BslFI GGGAC 1 cut(s) 224
BslI CCNNNNNNNGG 2 cut(s) 767, 1370
BsmAI GTCTC 2 cut(s) 299, 579
BsmFI GGGAC 1 cut(s) 224
Bsp119I TTCGAA 2 cut(s) 285, 412
Bsp143I GATC 5 cut(s) 275, 559, 617, 1048, 1260
Bsp19I CCATGG 1 cut(s) 952
BspHI TCATGA 2 cut(s) 514, 1231
BspLI GGNNCC 1 cut(s) 980
BspMI ACCTGC 1 cut(s) 550
BspOI GCTAGC 1 cut(s) 999
BspT104I TTCGAA 2 cut(s) 285, 412
BspT107I GGYRCC 1 cut(s) 978
BsrI ACTGG 1 cut(s) 857
BssECI CCNNGG 4 cut(s) 18, 198, 207, 952
BssMI GATC 5 cut(s) 275, 559, 617, 1048, 1260
BssSI CACGAG 1 cut(s) 675
BssT1I CCWWGG 3 cut(s) 18, 198, 952
Bst2BI CACGAG 1 cut(s) 675
Bst2UI CCWGG 4 cut(s) 208, 831, 1167, 1365
Bst6I CTCTTC 8 cut(s) 140, 553, 631, 657, 676, 700, 766, 790
BstBI TTCGAA 2 cut(s) 285, 412
BstC8I GCNNGC 4 cut(s) 718, 949, 997, 1001
BstDEI CTNAG 1 cut(s) 272
BstDSI CCRYGG 1 cut(s) 952
BstF5I GGATG 1 cut(s) 493
BstKTI GATC 5 cut(s) 278, 562, 620, 1051, 1263
BstMAI GTCTC 2 cut(s) 299, 579
BstMBI GATC 5 cut(s) 275, 559, 617, 1048, 1260
BstMWI GCNNNNNNNGC 2 cut(s) 188, 717
BstNI CCWGG 4 cut(s) 208, 831, 1167, 1365
BstNSI RCATGY 1 cut(s) 951
BstSCI CCNGG 4 cut(s) 206, 829, 1165, 1363
BstV1I GCAGC 3 cut(s) 175, 433, 956
BstV2I GAAGAC 1 cut(s) 254
BstX2I RGATCY 1 cut(s) 617
BstYI RGATCY 1 cut(s) 617
BtgI CCRYGG 1 cut(s) 952
BtsCI GGATG 1 cut(s) 493
BveI ACCTGC 1 cut(s) 550
Cac8I GCNNGC 4 cut(s) 718, 949, 997, 1001
CciI TCATGA 2 cut(s) 514, 1231
Cfr13I GGNCC 1 cut(s) 855
CsiI ACCWGGT 1 cut(s) 829
Csp6I GTAC 1 cut(s) 979
CviQI GTAC 1 cut(s) 979
DdeI CTNAG 1 cut(s) 272
DpnI GATC 5 cut(s) 277, 561, 619, 1050, 1262
DpnII GATC 5 cut(s) 275, 559, 617, 1048, 1260
DraI TTTAAA 2 cut(s) 102, 1117
DrdI GACNNNNNNGTC 1 cut(s) 878
DseDI GACNNNNNNGTC 1 cut(s) 878
Eam1104I CTCTTC 8 cut(s) 140, 553, 631, 657, 676, 700, 766, 790
EarI CTCTTC 8 cut(s) 140, 553, 631, 657, 676, 700, 766, 790
Eco130I CCWWGG 3 cut(s) 18, 198, 952
Eco47I GGWCC 1 cut(s) 855
Eco57I CTGAAG 1 cut(s) 248
EcoRII CCWGG 4 cut(s) 206, 829, 1165, 1363
EcoT14I CCWWGG 3 cut(s) 18, 198, 952
EcoT22I ATGCAT 1 cut(s) 900
ErhI CCWWGG 3 cut(s) 18, 198, 952
FalI AAGNNNNNCTT 4 cut(s) 119, 151, 1250, 1282
FaqI GGGAC 1 cut(s) 224
FauNDI CATATG 2 cut(s) 26, 1005
FblI GTMKAC 1 cut(s) 473
Fnu4HI GCNGC 3 cut(s) 189, 447, 945
FokI GGATG 1 cut(s) 500
Fsp4HI GCNGC 3 cut(s) 189, 447, 945
FspBI CTAG 1 cut(s) 996
GluI GCNGC 3 cut(s) 189, 447, 945
GsaI CCCAGC 1 cut(s) 1197
GsuI CTGGAG 1 cut(s) 828
HincII GTYRAC 1 cut(s) 340
HindII GTYRAC 1 cut(s) 340
HindIII AAGCTT 3 cut(s) 415, 1080, 1312
HinfI GANTC 6 cut(s) 109, 268, 336, 458, 604, 1021
HphI GGTGA 4 cut(s) 259, 746, 1067, 1082
Hpy166II GTNNAC 2 cut(s) 340, 474
Hpy188I TCNGA 4 cut(s) 267, 280, 884, 1150
Hpy188III TCNNGA 6 cut(s) 485, 515, 807, 1128, 1204, 1232
Hpy8I GTNNAC 2 cut(s) 340, 474
Hpy99I CGWCG 2 cut(s) 38, 41
HpyAV CCTTC 5 cut(s) 62, 112, 295, 725, 1088
HpyCH4IV ACGT 4 cut(s) 33, 51, 755, 802
HpyCH4V TGCA 5 cut(s) 74, 496, 862, 898, 1273
HpyF10VI GCNNNNNNNGC 2 cut(s) 188, 717
HpyF3I CTNAG 1 cut(s) 272
HpySE526I ACGT 4 cut(s) 33, 51, 755, 802
KpnI GGTACC 1 cut(s) 982
Kzo9I GATC 5 cut(s) 275, 559, 617, 1048, 1260
LmnI GCTCC 2 cut(s) 884, 992
Lsp1109I GCAGC 3 cut(s) 175, 433, 956
LweI GCATC 3 cut(s) 324, 1063, 1207
MabI ACCWGGT 1 cut(s) 829
MaeI CTAG 1 cut(s) 996
MaeII ACGT 4 cut(s) 33, 51, 755, 802
MaeIII GTNAC 7 cut(s) 47, 420, 611, 734, 1013, 1060, 1387
MalI GATC 5 cut(s) 277, 561, 619, 1050, 1262
MboI GATC 5 cut(s) 275, 559, 617, 1048, 1260
MfeI CAATTG 3 cut(s) 153, 598, 1065
MflI RGATCY 1 cut(s) 617
MluCI AATT 8 cut(s) 153, 177, 598, 670, 699, 847, 1065, 1180
MlyI GAGTC 2 cut(s) 262, 345
MmeI TCCRAC 3 cut(s) 273, 862, 1081
Mph1103I ATGCAT 1 cut(s) 900
MroXI GAANNNNTTC 2 cut(s) 405, 1025
MslI CAYNNNNRTG 3 cut(s) 630, 1230, 1236
MspR9I CCNGG 4 cut(s) 208, 831, 1167, 1365
MunI CAATTG 3 cut(s) 153, 598, 1065
MvaI CCWGG 4 cut(s) 208, 831, 1167, 1365
MwoI GCNNNNNNNGC 2 cut(s) 188, 717
NcoI CCATGG 1 cut(s) 952
NdeI CATATG 2 cut(s) 26, 1005
NdeII GATC 5 cut(s) 275, 559, 617, 1048, 1260
NheI GCTAGC 1 cut(s) 995
NlaIV GGNNCC 1 cut(s) 980
NmuCI GTSAC 3 cut(s) 611, 734, 1387
NsiI ATGCAT 1 cut(s) 900
NspI RCATGY 1 cut(s) 951
NspV TTCGAA 2 cut(s) 285, 412
PaeI GCATGC 1 cut(s) 951
PagI TCATGA 2 cut(s) 514, 1231
PdmI GAANNNNTTC 2 cut(s) 405, 1025
PfeI GAWTC 4 cut(s) 109, 458, 604, 1021
PflMI CCANNNNNTGG 1 cut(s) 1370
PfoI TCCNGGA 1 cut(s) 1165
PkrI GCNGC 3 cut(s) 190, 448, 946
PleI GAGTC 2 cut(s) 262, 344
PpsI GAGTC 2 cut(s) 262, 344
PshBI ATTAAT 1 cut(s) 528
Psp6I CCWGG 4 cut(s) 206, 829, 1165, 1363
PspFI CCCAGC 1 cut(s) 1193
PspGI CCWGG 4 cut(s) 206, 829, 1165, 1363
PspN4I GGNNCC 1 cut(s) 980
PspPI GGNCC 1 cut(s) 855
PsuI RGATCY 1 cut(s) 617
RsaI GTAC 1 cut(s) 980
RsaNI GTAC 1 cut(s) 979
RseI CAYNNNNRTG 3 cut(s) 630, 1230, 1236
SatI GCNGC 3 cut(s) 189, 447, 945
Sau3AI GATC 5 cut(s) 275, 559, 617, 1048, 1260
Sau96I GGNCC 1 cut(s) 855
SchI GAGTC 2 cut(s) 262, 345
ScrFI CCNGG 4 cut(s) 208, 831, 1167, 1365
SexAI ACCWGGT 1 cut(s) 829
SfaNI GCATC 3 cut(s) 324, 1063, 1207
SfuI TTCGAA 2 cut(s) 285, 412
SinI GGWCC 1 cut(s) 855
SmiI ATTTAAAT 1 cut(s) 1117
SmiMI CAYNNNNRTG 3 cut(s) 630, 1230, 1236
SmlI CTYRAG 5 cut(s) 183, 569, 576, 1204, 1309
SmoI CTYRAG 5 cut(s) 183, 569, 576, 1204, 1309
SphI GCATGC 1 cut(s) 951
Sse9I AATT 8 cut(s) 153, 177, 598, 670, 699, 847, 1065, 1180
SspMI CTAG 1 cut(s) 996
StyD4I CCNGG 4 cut(s) 206, 829, 1165, 1363
StyI CCWWGG 3 cut(s) 18, 198, 952
SwaI ATTTAAAT 1 cut(s) 1117
TaiI ACGT 4 cut(s) 36, 54, 758, 805
TaqI TCGA 4 cut(s) 39, 112, 285, 412
TasI AATT 8 cut(s) 153, 177, 598, 670, 699, 847, 1065, 1180
TfiI GAWTC 4 cut(s) 109, 458, 604, 1021
TseFI GTSAC 3 cut(s) 611, 734, 1387
TseI GCWGC 3 cut(s) 188, 446, 944
Tsp45I GTSAC 3 cut(s) 611, 734, 1387
TspDTI ATGAA 8 cut(s) 81, 186, 209, 314, 744, 915, 1214, 1220
Van91I CCANNNNNTGG 1 cut(s) 1370
VpaK11BI GGWCC 1 cut(s) 855
VspI ATTAAT 1 cut(s) 528
XceI RCATGY 1 cut(s) 951
XmiI GTMKAC 1 cut(s) 473
XmnI GAANNNNTTC 2 cut(s) 405, 1025
XspI CTAG 1 cut(s) 996
Zsp2I ATGCAT 1 cut(s) 900
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.