RchiOBHm_Chr7g0200561

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000106
Physical Location & Seq
Reverse (-)
18336883 .. 18339459
2577 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17953

Sequence Viewer

Length: 1221 bp
ATGTATGTTATTCTTACTTCTGCTTATCTCATAAATCGGACATCCACACCAATTCTCAAAGGCAAAACACCTTTCGAAATGTTGTTTCACAAGGTACCTAACTACTTACATTTACGGGTTTTTGGGTGTTTGTGTTTTGCGTCCACACATCCTTACAAACCATCAAAATTTGATGCCCGTTCCACCAAGTGTATTTTCTTGGGTTATCCCCACGGTCAAAAGGGATATAGTGTTTATGATTTAGAGAAACAAAAGGTCTTGGTTTCACGTGATGTAGTGTTTTATGAGGATTCTTTTCCTTTTCAATCTGCTTCTTATTCACACTCTACAAATCACGATCCCATTTTCTTGCCACAAACAGCTCCATCATCTTTTGATCATGAGATCTCATCAAACACTCAAGATTCTCTTCCTATAAATCCTCCAACTGACCTAACATCCAGTCCAAACACATCATATGAGTCAATCATTCCTTTGAATACGGAATCATCATTAGAGTCTGTCATTCCTTCATCACCGCCCACTAATTCTGCTCCTGTGCCTCTTTCACAATCACCACCAATACGTCGCTCTAGCAGACCTACCAAAACACCATCCTTTCTTCAAGATTTTCACATCGAAGATGCTCTTCCCTCTCGGCCTCCACATTCGTCTTCAACAAACAAGGCTCCTCAATGTACTACCCACTCTCTTTCTAATGTATTTTCTTATACTAGACTTTCCCCTAACCATAGAGCTTTTACTACTAAACTCACCATACAAAAAGAACCAACCTCGTTTTTGCAGGCTGTTAAATGTCTACAATGGAGAGAGGTGATGCACAAAGAGATTCAAGCTCTCCGGTCTAATCATACCTGGAGTTTGGTCTCACTTCCATCGAACAAACGACCCATCGGTTGCAAGTGGGTTTACAAGATAAAACTCAACCCGGATGGGTCTGTTGAAAGACATAAGGCTCGATTGGTCGCTAAGGGATACAATCAGATAGAGGAAGTGGACTATAGAGAAACATTTTCCCTTGTTGCTAAGTTAACAACAGTACAAGTTCTTCTCAGCCTTGCAACTATGAAGGGTTGGCACTTACACCAACTCGATGTGAACAATGCATTTTTGAATGGTGATCTTTATGAAGAAGTCTATATGCAGCTTCCTCCTGGTTTCGAACGAAATGGGGAGACAAGAGTGTGCAAATTGCACAAATCAATTTATGGCCTAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve

Protein Analysis

406

Amino Acids

45.99

Weight (kDa)

9.19

Isoelectric Point (pI)

58.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SH3_retrovirus PF25597 43 - 104 2.8e-24 Retroviral polymerase SH3-like domain
RVT_2 PF07727 283 - 406 8.6e-43 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20980 AT3G21000
fragaria_vesca FvH4_1g15931 FvH4_1g15931 FvH4_1g18381 FvH4_1g18382 FvH4_1g22571 FvH4_1g24950 FvH4_1g29372 FvH4_2g03582 FvH4_2g09851 FvH4_2g13112 FvH4_2g20843 FvH4_2g22701 FvH4_2g22702 FvH4_2g23403 FvH4_2g40201 FvH4_3g03542 FvH4_3g03543 FvH4_3g04761 FvH4_3g10464 FvH4_3g12741 FvH4_3g15781 FvH4_3g30981 FvH4_4g00985 FvH4_4g07035 FvH4_4g08192 FvH4_4g08211 FvH4_4g08553 FvH4_4g14242 FvH4_4g14243 FvH4_4g14641 FvH4_4g14843 FvH4_4g14844 FvH4_4g15061 FvH4_4g16281 FvH4_4g19152 FvH4_4g26451 FvH4_5g06442 FvH4_5g22521 FvH4_5g24301 FvH4_5g38641 FvH4_6g02393 FvH4_6g12782 FvH4_6g13871 FvH4_6g19391 FvH4_6g20105 FvH4_6g21292 FvH4_6g23581 FvH4_6g29153 FvH4_6g29691 FvH4_6g30871 FvH4_6g33351 FvH4_6g37042 FvH4_6g38781 FvH4_6g40340 FvH4_7g11221 FvH4_7g23352 FvH4_7g23352 FvH4_7g31212 FvH4_7g32172 FvH4_7g32173 FvH4_7g33701
malus_domestica MD03G1006900.v1.1 MD04G1039100.v1.1 MD04G1239100.v1.1 MD05G1048700.v1.1 MD08G1001800.v1.1 MD09G1165800.v1.1 MD11G1065200.v1.1 MD11G1138200.v1.1 MD14G1033300.v1.1 MD14G1173900.v1.1 MD15G1218200.v1.1 MD16G1034000.v1.1
prunus_persica Prupe.1G219500_v2.0.a1 Prupe.2G169400_v2.0.a1 Prupe.4G109700_v2.0.a1 Prupe.7G022000_v2.0.a1
pyrus_communis pycom01g02000 pycom02g13350 pycom03g01010 pycom04g05000 pycom04g06100 pycom05g05580 pycom05g09950 pycom05g13280 pycom05g26610 pycom06g05940 pycom06g07760 pycom07g06120 pycom07g24780 pycom08g08820 pycom09g03600 pycom09g07200 pycom10g01280 pycom10g06730 pycom10g08410 pycom10g25520 pycom11g00470 pycom11g05250 pycom11g25180 pycom12g08050 pycom13g14760 pycom13g28170 pycom15g14310 pycom15g19880 pycom15g24230 pycom15g33640 pycom16g02150 pycom16g16240 pycom16g20050 pycom16g21090 pycom17g06100
rosa_chinensis RchiOBHm_Chr1g0322161 RchiOBHm_Chr1g0326341 RchiOBHm_Chr1g0357701 RchiOBHm_Chr1g0379861 RchiOBHm_Chr1g0383421 RchiOBHm_Chr2g0093981 RchiOBHm_Chr2g0139051 RchiOBHm_Chr2g0145501 RchiOBHm_Chr3g0450971 RchiOBHm_Chr3g0451441 RchiOBHm_Chr3g0457411 RchiOBHm_Chr4g0436261 RchiOBHm_Chr5g0051431 RchiOBHm_Chr5g0064031 RchiOBHm_Chr5g0073141 RchiOBHm_Chr5g0080061 RchiOBHm_Chr7g0200561 RchiOBHm_Chr7g0235911
rosa_laevigata RLG00000000145 RLG00000000429 RLG00000020339 RLG00000035212
rosa_multiflora Rmu_co7977988.1_g000001 Rmu_co8037866.1_g000001 Rmu_co8243895.1_g000001 Rmu_co8363787.1_g000001 Rmu_co8381003.1_g000001 Rmu_sc0000263.1_g000006 Rmu_sc0000349.1_g000002 Rmu_sc0000455.1_g000031 Rmu_sc0000936.1_g000022 Rmu_sc0001035.1_g000023 Rmu_sc0001169.1_g000019 Rmu_sc0001250.1_g000026 Rmu_sc0002200.1_g000051 Rmu_sc0002230.1_g000027 Rmu_sc0002591.1_g000039 Rmu_sc0003182.1_g000003 Rmu_sc0003441.1_g000068 Rmu_sc0003722.1_g000018 Rmu_sc0003764.1_g000007 Rmu_sc0006014.1_g000016 Rmu_sc0012582.1_g000002 Rmu_sc0013519.1_g000002 Rmu_sc0014550.1_g000005 Rmu_sc0014857.1_g000007 Rmu_sc0019855.1_g000001 Rmu_sc0030839.1_g000001 Rmu_sc0031308.1_g000001
rosa_roxburghii Rroxscaffold_1G00011290 Rroxscaffold_1G00041340 Rroxscaffold_1G00053780 Rroxscaffold_1G00059130 Rroxscaffold_1G00061580 Rroxscaffold_2G00080940 Rroxscaffold_2G00109540 Rroxscaffold_3G00228400 Rroxscaffold_3G00237710 Rroxscaffold_4G00285210 Rroxscaffold_4G00299600 Rroxscaffold_4G00324940 Rroxscaffold_4G00330580 Rroxscaffold_5G00333000 Rroxscaffold_5G00347920 Rroxscaffold_5G00375310 Rroxscaffold_6G00394760 Rroxscaffold_6G00406260 Rroxscaffold_7G00165690 Rroxscaffold_7G00187680
rosa_rugosa Rorug01G0050200 Rorug02G0273800 Rorug06G0490600 Rorug06G0490600 Rorug06G0490700
rosa_samantha Rh1AG348400 Rh5AG222600 Rh6DG000500 Rh6DG194500 Rh7BG452700
rosa_wichuraiana Rw0G003060 Rw0G010530 Rw0G012970 Rw0G022560 Rw0G023390 Rw1G001270 Rw1G001530 Rw1G006070 Rw1G008210 Rw1G022090 Rw1G023320 Rw2G003790 Rw2G004140 Rw2G005280 Rw2G006460 Rw2G019620 Rw2G019840 Rw2G022530 Rw2G023280 Rw2G024990 Rw2G042380 Rw2G051390 Rw3G001640 Rw3G016720 Rw3G017100 Rw3G020890 Rw3G020900 Rw3G021100 Rw4G004820 Rw4G014950 Rw4G030920 Rw4G031400 Rw5G008500 Rw5G017950 Rw5G020170 Rw5G030160 Rw5G033050 Rw5G034640 Rw5G043920 Rw6G005060 Rw6G005540 Rw6G006720 Rw6G008460 Rw6G008670 Rw6G014780 Rw6G019100 Rw6G019350 Rw6G026310 Rw7G016810 Rw7G019180 Rw7G022890 Rw7G025880 Rw7G026390 Rw7G028340 Rw7G034850 Rw7G035170 Rw7G035420 Rw7G037990 Rw7G041560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 94
AccB1I GGYRCC 1 cut(s) 94
AccI GTMKAC 1 cut(s) 799
AciI CCGC 1 cut(s) 518
AclWI GGATC 1 cut(s) 332
AcsI RAATTY 1 cut(s) 167
AcvI CACGTG 1 cut(s) 269
AdeI CACNNNGTG 1 cut(s) 189
AfaI GTAC 3 cut(s) 96, 679, 1041
AgsI TTSAA 7 cut(s) 305, 478, 605, 657, 833, 944, 1114
AjnI CCWGG 2 cut(s) 854, 1153
AjuI GAANNNNNNNTTGG 2 cut(s) 179, 211
AluBI AGCT 4 cut(s) 362, 737, 836, 1147
AluI AGCT 4 cut(s) 362, 737, 836, 1147
Alw26I GTCTC 2 cut(s) 871, 1169
AlwI GGATC 1 cut(s) 332
AoxI GGCC 2 cut(s) 638, 1210
ApeKI GCWGC 1 cut(s) 1144
ApoI RAATTY 1 cut(s) 167
Asp718I GGTACC 1 cut(s) 94
AsuC2I CCSGG 1 cut(s) 929
AsuHPI GGTGA 5 cut(s) 507, 546, 745, 826, 1130
AsuII TTCGAA 2 cut(s) 75, 1161
BanI GGYRCC 1 cut(s) 94
BarI GAAGNNNNNNTAC 2 cut(s) 1032, 1064
BbrPI CACGTG 1 cut(s) 269
BbsI GAAGAC 1 cut(s) 645
BbvI GCAGC 1 cut(s) 1156
BccI CCATC 6 cut(s) 169, 373, 601, 883, 899, 926
BciT130I CCWGG 2 cut(s) 856, 1155
BciVI GTATCC 1 cut(s) 968
BclI TGATCA 1 cut(s) 376
BcnI CCSGG 1 cut(s) 929
BcoDI GTCTC 2 cut(s) 871, 1169
BfaI CTAG 2 cut(s) 573, 714
BfmI CTRYAG 1 cut(s) 1000
BfuI GTATCC 1 cut(s) 968
BglII AGATCT 1 cut(s) 384
BisI GCNGC 1 cut(s) 1145
BlsI GCNGC 1 cut(s) 1146
Bme1390I CCNGG 3 cut(s) 856, 929, 1155
BmiI GGNNCC 2 cut(s) 96, 669
BmrFI CCNGG 3 cut(s) 856, 929, 1155
BmsI GCATC 3 cut(s) 163, 613, 807
BpiI GAAGAC 1 cut(s) 645
BpmI CTGGAG 1 cut(s) 877
Bpu10I CCTNAGC 1 cut(s) 969
Bpu14I TTCGAA 2 cut(s) 75, 1161
BpuEI CTTGAG 1 cut(s) 384
BpuMI CCSGG 1 cut(s) 929
BsaAI YACGTR 1 cut(s) 269
BsaI GGTCTC 1 cut(s) 871
BsaJI CCNNGG 1 cut(s) 211
BsaWI WCCGGW 1 cut(s) 840
Bse1I ACTGG 1 cut(s) 441
BseBI CCWGG 2 cut(s) 856, 1155
BseDI CCNNGG 1 cut(s) 211
BseGI GGATG 5 cut(s) 41, 148, 437, 593, 937
BseMII CTCAG 1 cut(s) 1066
BseNI ACTGG 1 cut(s) 441
BseRI GAGGAG 1 cut(s) 660
BseXI GCAGC 1 cut(s) 1156
BshFI GGCC 2 cut(s) 640, 1212
BshNI GGYRCC 1 cut(s) 94
BsiSI CCGG 2 cut(s) 841, 929
BsmAI GTCTC 2 cut(s) 871, 1169
BsnI GGCC 2 cut(s) 640, 1212
Bso31I GGTCTC 1 cut(s) 871
Bsp119I TTCGAA 2 cut(s) 75, 1161
Bsp143I GATC 4 cut(s) 337, 376, 384, 1120
BspACI CCGC 1 cut(s) 518
BspANI GGCC 2 cut(s) 640, 1212
BspCNI CTCAG 1 cut(s) 1065
BspHI TCATGA 1 cut(s) 379
BspLI GGNNCC 2 cut(s) 96, 669
BspPI GGATC 1 cut(s) 332
BspQI GCTCTTC 1 cut(s) 633
BspT104I TTCGAA 2 cut(s) 75, 1161
BspT107I GGYRCC 1 cut(s) 94
BspTNI GGTCTC 1 cut(s) 871
BsrI ACTGG 1 cut(s) 441
BssECI CCNNGG 1 cut(s) 211
BssMI GATC 4 cut(s) 337, 376, 384, 1120
Bst2UI CCWGG 2 cut(s) 856, 1155
Bst4CI ACNGT 2 cut(s) 215, 1039
Bst6I CTCTTC 2 cut(s) 414, 633
BstBAI YACGTR 1 cut(s) 269
BstBI TTCGAA 2 cut(s) 75, 1161
BstC8I GCNNGC 1 cut(s) 786
BstDEI CTNAG 3 cut(s) 969, 1026, 1052
BstDSI CCRYGG 1 cut(s) 211
BstF5I GGATG 5 cut(s) 41, 148, 437, 593, 937
BstKTI GATC 4 cut(s) 340, 379, 387, 1123
BstMAI GTCTC 2 cut(s) 871, 1169
BstMBI GATC 4 cut(s) 337, 376, 384, 1120
BstNI CCWGG 2 cut(s) 856, 1155
BstSCI CCNGG 3 cut(s) 854, 927, 1153
BstSFI CTRYAG 1 cut(s) 1000
BstV1I GCAGC 1 cut(s) 1156
BstV2I GAAGAC 1 cut(s) 645
BstX2I RGATCY 1 cut(s) 384
BstYI RGATCY 1 cut(s) 384
BsuI GTATCC 1 cut(s) 968
BsuRI GGCC 2 cut(s) 640, 1212
BtgI CCRYGG 1 cut(s) 211
BtsCI GGATG 5 cut(s) 41, 148, 437, 593, 937
Cac8I GCNNGC 1 cut(s) 786
CciI TCATGA 1 cut(s) 379
CseI GACGC 1 cut(s) 129
Csp6I GTAC 3 cut(s) 95, 678, 1040
CviAII CATG 1 cut(s) 380
CviQI GTAC 3 cut(s) 95, 678, 1040
DdeI CTNAG 3 cut(s) 969, 1026, 1052
DpnI GATC 4 cut(s) 339, 378, 386, 1122
DpnII GATC 4 cut(s) 337, 376, 384, 1120
DraIII CACNNNGTG 1 cut(s) 189
Eam1104I CTCTTC 2 cut(s) 414, 633
EarI CTCTTC 2 cut(s) 414, 633
Eco31I GGTCTC 1 cut(s) 871
Eco72I CACGTG 1 cut(s) 269
EcoRII CCWGG 2 cut(s) 854, 1153
EcoT22I ATGCAT 1 cut(s) 1108
FaeI CATG 1 cut(s) 383
FalI AAGNNNNNCTT 4 cut(s) 393, 425, 612, 644
FatI CATG 1 cut(s) 379
FauNDI CATATG 1 cut(s) 457
FbaI TGATCA 1 cut(s) 376
FblI GTMKAC 1 cut(s) 799
Fnu4HI GCNGC 1 cut(s) 1145
FokI GGATG 5 cut(s) 28, 135, 424, 580, 944
Fsp4HI GCNGC 1 cut(s) 1145
FspBI CTAG 2 cut(s) 573, 714
GluI GCNGC 1 cut(s) 1145
GsuI CTGGAG 1 cut(s) 877
HaeIII GGCC 2 cut(s) 640, 1212
HapII CCGG 2 cut(s) 841, 929
HgaI GACGC 1 cut(s) 129
Hin1II CATG 1 cut(s) 383
HincII GTYRAC 1 cut(s) 1032
HindII GTYRAC 1 cut(s) 1032
HinfI GANTC 6 cut(s) 290, 404, 461, 485, 497, 829
HpaI GTTAAC 1 cut(s) 1032
HpaII CCGG 2 cut(s) 841, 929
HphI GGTGA 5 cut(s) 507, 546, 745, 826, 1130
Hpy166II GTNNAC 6 cut(s) 144, 800, 910, 997, 1032, 1099
Hpy188I TCNGA 2 cut(s) 39, 984
Hpy188III TCNNGA 4 cut(s) 335, 380, 401, 605
Hpy8I GTNNAC 6 cut(s) 144, 800, 910, 997, 1032, 1099
Hpy99I CGWCG 1 cut(s) 570
HpyAV CCTTC 2 cut(s) 519, 1063
HpyCH4III ACNGT 2 cut(s) 215, 1039
HpyCH4IV ACGT 2 cut(s) 268, 565
HpyCH4V TGCA 8 cut(s) 784, 820, 900, 1061, 1106, 1144, 1188, 1195
HpyF3I CTNAG 3 cut(s) 969, 1026, 1052
HpySE526I ACGT 2 cut(s) 268, 565
Hsp92II CATG 1 cut(s) 383
KpnI GGTACC 1 cut(s) 98
Ksp22I TGATCA 1 cut(s) 376
KspAI GTTAAC 1 cut(s) 1032
Kzo9I GATC 4 cut(s) 337, 376, 384, 1120
LguI GCTCTTC 1 cut(s) 633
LmnI GCTCC 3 cut(s) 367, 538, 673
LpnPI CCDG 9 cut(s) 454, 549, 770, 841, 854, 868, 942, 1140, 1167
Lsp1109I GCAGC 1 cut(s) 1156
LweI GCATC 3 cut(s) 163, 613, 807
MaeI CTAG 2 cut(s) 573, 714
MaeII ACGT 2 cut(s) 268, 565
MalI GATC 4 cut(s) 339, 378, 386, 1122
MboI GATC 4 cut(s) 337, 376, 384, 1120
MboII GAAGA 7 cut(s) 401, 593, 620, 632, 645, 1040, 1142
MflI RGATCY 1 cut(s) 384
MluCI AATT 5 cut(s) 51, 167, 526, 1190, 1203
MlyI GAGTC 2 cut(s) 470, 506
MmeI TCCRAC 1 cut(s) 449
Mph1103I ATGCAT 1 cut(s) 1108
MseI TTAA 2 cut(s) 792, 1031
MspI CCGG 2 cut(s) 841, 929
MspR9I CCNGG 3 cut(s) 856, 929, 1155
MvaI CCWGG 2 cut(s) 856, 1155
NciI CCSGG 1 cut(s) 929
NdeI CATATG 1 cut(s) 457
NdeII GATC 4 cut(s) 337, 376, 384, 1120
NlaIII CATG 1 cut(s) 383
NlaIV GGNNCC 2 cut(s) 96, 669
NmeAIII GCCGAG 1 cut(s) 616
NsiI ATGCAT 1 cut(s) 1108
NspV TTCGAA 2 cut(s) 75, 1161
PagI TCATGA 1 cut(s) 379
PciSI GCTCTTC 1 cut(s) 633
PfeI GAWTC 4 cut(s) 290, 404, 485, 829
PkrI GCNGC 1 cut(s) 1146
PleI GAGTC 2 cut(s) 469, 505
PmaCI CACGTG 1 cut(s) 269
PmlI CACGTG 1 cut(s) 269
PpsI GAGTC 2 cut(s) 469, 505
Ppu21I YACGTR 1 cut(s) 269
Psp6I CCWGG 2 cut(s) 854, 1153
PspCI CACGTG 1 cut(s) 269
PspGI CCWGG 2 cut(s) 854, 1153
PspN4I GGNNCC 2 cut(s) 96, 669
PsuI RGATCY 1 cut(s) 384
RsaI GTAC 3 cut(s) 96, 679, 1041
RsaNI GTAC 3 cut(s) 95, 678, 1040
SapI GCTCTTC 1 cut(s) 633
SaqAI TTAA 2 cut(s) 792, 1031
SatI GCNGC 1 cut(s) 1145
Sau3AI GATC 4 cut(s) 337, 376, 384, 1120
SchI GAGTC 2 cut(s) 470, 506
ScrFI CCNGG 3 cut(s) 856, 929, 1155
SfaNI GCATC 3 cut(s) 163, 613, 807
SfcI CTRYAG 1 cut(s) 1000
SfuI TTCGAA 2 cut(s) 75, 1161
SmlI CTYRAG 1 cut(s) 399
SmoI CTYRAG 1 cut(s) 399
Sse9I AATT 5 cut(s) 51, 167, 526, 1190, 1203
SsiI CCGC 1 cut(s) 518
SspMI CTAG 2 cut(s) 573, 714
StyD4I CCNGG 3 cut(s) 854, 927, 1153
TaaI ACNGT 2 cut(s) 215, 1039
TaiI ACGT 2 cut(s) 271, 568
TaqI TCGA 6 cut(s) 75, 618, 878, 958, 1092, 1161
TasI AATT 5 cut(s) 51, 167, 526, 1190, 1203
TatI WGTACW 2 cut(s) 677, 1039
TfiI GAWTC 4 cut(s) 290, 404, 485, 829
Tru1I TTAA 2 cut(s) 792, 1031
Tru9I TTAA 2 cut(s) 792, 1031
TseI GCWGC 1 cut(s) 1144
TspDTI ATGAA 3 cut(s) 501, 1082, 1143
TspGWI ACGGA 1 cut(s) 497
XapI RAATTY 1 cut(s) 167
XmiI GTMKAC 1 cut(s) 799
XspI CTAG 2 cut(s) 573, 714
Zsp2I ATGCAT 1 cut(s) 1108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.