Mitochondrial protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 251 |
| AciI | CCGC | 2 cut(s) | 249, 251 |
| AcoI | YGGCCR | 2 cut(s) | 324, 371 |
| AfaI | GTAC | 2 cut(s) | 29, 69 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 351 |
| AflII | CTTAAG | 1 cut(s) | 112 |
| AgsI | TTSAA | 2 cut(s) | 334, 553 |
| AjiI | CACGTC | 1 cut(s) | 268 |
| AjnI | CCWGG | 1 cut(s) | 368 |
| AluBI | AGCT | 3 cut(s) | 242, 448, 471 |
| AluI | AGCT | 3 cut(s) | 242, 448, 471 |
| Alw21I | GWGCWC | 1 cut(s) | 152 |
| Alw26I | GTCTC | 1 cut(s) | 370 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 393 |
| AoxI | GGCC | 3 cut(s) | 234, 324, 371 |
| ApeKI | GCWGC | 1 cut(s) | 420 |
| AspS9I | GGNCC | 1 cut(s) | 117 |
| AsuHPI | GGTGA | 3 cut(s) | 37, 86, 98 |
| AvaII | GGWCC | 1 cut(s) | 117 |
| BaeGI | GKGCMC | 1 cut(s) | 346 |
| BalI | TGGCCA | 1 cut(s) | 326 |
| Bbv12I | GWGCWC | 1 cut(s) | 152 |
| BbvI | GCAGC | 1 cut(s) | 432 |
| BccI | CCATC | 3 cut(s) | 76, 211, 500 |
| BceAI | ACGGC | 1 cut(s) | 221 |
| BciT130I | CCWGG | 1 cut(s) | 370 |
| BcoDI | GTCTC | 1 cut(s) | 370 |
| BfaI | CTAG | 3 cut(s) | 384, 407, 491 |
| BfrI | CTTAAG | 1 cut(s) | 112 |
| BglII | AGATCT | 1 cut(s) | 108 |
| BisI | GCNGC | 1 cut(s) | 421 |
| BlsI | GCNGC | 1 cut(s) | 422 |
| Bme1390I | CCNGG | 1 cut(s) | 370 |
| Bme18I | GGWCC | 1 cut(s) | 117 |
| BmgBI | CACGTC | 1 cut(s) | 268 |
| BmgT120I | GGNCC | 1 cut(s) | 117 |
| BmrFI | CCNGG | 1 cut(s) | 370 |
| BsaJI | CCNNGG | 1 cut(s) | 249 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 351 |
| Bse3DI | GCAATG | 1 cut(s) | 48 |
| BseBI | CCWGG | 1 cut(s) | 370 |
| BseDI | CCNNGG | 1 cut(s) | 249 |
| BseGI | GGATG | 2 cut(s) | 16, 195 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 351 |
| BseMI | GCAATG | 1 cut(s) | 48 |
| BseMII | CTCAG | 3 cut(s) | 176, 519, 557 |
| BseRI | GAGGAG | 1 cut(s) | 245 |
| BseSI | GKGCMC | 1 cut(s) | 346 |
| BseXI | GCAGC | 1 cut(s) | 432 |
| BsgI | GTGCAG | 1 cut(s) | 439 |
| Bsh1236I | CGCG | 1 cut(s) | 251 |
| Bsh1285I | CGRYCG | 1 cut(s) | 277 |
| BshFI | GGCC | 3 cut(s) | 236, 326, 373 |
| BsiEI | CGRYCG | 1 cut(s) | 277 |
| BsiHKAI | GWGCWC | 1 cut(s) | 152 |
| BslFI | GGGAC | 1 cut(s) | 527 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 351 |
| BsmAI | GTCTC | 1 cut(s) | 370 |
| BsmFI | GGGAC | 1 cut(s) | 527 |
| BsmI | GAATGC | 1 cut(s) | 307 |
| BsnI | GGCC | 3 cut(s) | 236, 326, 373 |
| Bsp1286I | GDGCHC | 2 cut(s) | 152, 346 |
| Bsp143I | GATC | 3 cut(s) | 108, 274, 457 |
| BspACI | CCGC | 2 cut(s) | 249, 251 |
| BspANI | GGCC | 3 cut(s) | 236, 326, 373 |
| BspCNI | CTCAG | 3 cut(s) | 177, 520, 558 |
| BspFNI | CGCG | 1 cut(s) | 251 |
| BspTI | CTTAAG | 1 cut(s) | 112 |
| BsrDI | GCAATG | 1 cut(s) | 48 |
| BssECI | CCNNGG | 1 cut(s) | 249 |
| BssMI | GATC | 3 cut(s) | 108, 274, 457 |
| Bst2UI | CCWGG | 1 cut(s) | 370 |
| Bst4CI | ACNGT | 3 cut(s) | 297, 313, 395 |
| Bst6I | CTCTTC | 3 cut(s) | 222, 249, 255 |
| BstAFI | CTTAAG | 1 cut(s) | 112 |
| BstDEI | CTNAG | 3 cut(s) | 185, 528, 566 |
| BstDSI | CCRYGG | 1 cut(s) | 249 |
| BstF5I | GGATG | 2 cut(s) | 16, 195 |
| BstFNI | CGCG | 1 cut(s) | 251 |
| BstKTI | GATC | 3 cut(s) | 111, 277, 460 |
| BstMAI | GTCTC | 1 cut(s) | 370 |
| BstMBI | GATC | 3 cut(s) | 108, 274, 457 |
| BstMCI | CGRYCG | 1 cut(s) | 277 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 248, 370 |
| BstNI | CCWGG | 1 cut(s) | 370 |
| BstNSI | RCATGY | 1 cut(s) | 521 |
| BstSCI | CCNGG | 1 cut(s) | 368 |
| BstSLI | GKGCMC | 1 cut(s) | 346 |
| BstUI | CGCG | 1 cut(s) | 251 |
| BstV1I | GCAGC | 1 cut(s) | 432 |
| BstX2I | RGATCY | 1 cut(s) | 108 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 434 |
| BstYI | RGATCY | 1 cut(s) | 108 |
| BsuRI | GGCC | 3 cut(s) | 236, 326, 373 |
| BtgI | CCRYGG | 1 cut(s) | 249 |
| BtrI | CACGTC | 1 cut(s) | 268 |
| BtsCI | GGATG | 2 cut(s) | 16, 195 |
| BtsI | GCAGTG | 1 cut(s) | 394 |
| BtsIMutI | CAGTG | 3 cut(s) | 302, 309, 394 |
| CaiI | CAGNNNCTG | 1 cut(s) | 393 |
| Cfr13I | GGNCC | 1 cut(s) | 117 |
| Cfr42I | CCGCGG | 1 cut(s) | 252 |
| Csp6I | GTAC | 2 cut(s) | 28, 68 |
| CviAII | CATG | 5 cut(s) | 71, 121, 316, 514, 518 |
| CviJI | RGCY | 7 cut(s) | 236, 242, 321, 326, 373, 448, 471 |
| CviKI_1 | RGCY | 7 cut(s) | 236, 242, 321, 326, 373, 448, 471 |
| CviQI | GTAC | 2 cut(s) | 28, 68 |
| DdeI | CTNAG | 3 cut(s) | 185, 528, 566 |
| DpnI | GATC | 3 cut(s) | 110, 276, 459 |
| DpnII | GATC | 3 cut(s) | 108, 274, 457 |
| DraI | TTTAAA | 1 cut(s) | 475 |
| EaeI | YGGCCR | 2 cut(s) | 324, 371 |
| Eam1104I | CTCTTC | 3 cut(s) | 222, 249, 255 |
| EarI | CTCTTC | 3 cut(s) | 222, 249, 255 |
| Eco47I | GGWCC | 1 cut(s) | 117 |
| EcoRII | CCWGG | 1 cut(s) | 368 |
| EcoT22I | ATGCAT | 1 cut(s) | 519 |
| FaeI | CATG | 5 cut(s) | 74, 124, 319, 517, 521 |
| FaqI | GGGAC | 1 cut(s) | 527 |
| FatI | CATG | 5 cut(s) | 70, 120, 315, 513, 517 |
| FauNDI | CATATG | 1 cut(s) | 429 |
| Fnu4HI | GCNGC | 1 cut(s) | 421 |
| FokI | GGATG | 2 cut(s) | 23, 202 |
| Fsp4HI | GCNGC | 1 cut(s) | 421 |
| FspBI | CTAG | 3 cut(s) | 384, 407, 491 |
| GluI | GCNGC | 1 cut(s) | 421 |
| HaeIII | GGCC | 3 cut(s) | 236, 326, 373 |
| Hin1II | CATG | 5 cut(s) | 74, 124, 319, 517, 521 |
| HindIII | AAGCTT | 1 cut(s) | 469 |
| HinfI | GANTC | 5 cut(s) | 14, 124, 161, 410, 510 |
| HphI | GGTGA | 3 cut(s) | 37, 86, 98 |
| Hpy166II | GTNNAC | 1 cut(s) | 77 |
| Hpy188III | TCNNGA | 4 cut(s) | 103, 210, 278, 407 |
| Hpy8I | GTNNAC | 1 cut(s) | 77 |
| HpyAV | CCTTC | 1 cut(s) | 436 |
| HpyCH4III | ACNGT | 3 cut(s) | 297, 313, 395 |
| HpyCH4IV | ACGT | 2 cut(s) | 141, 267 |
| HpyCH4V | TGCA | 2 cut(s) | 420, 517 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 248, 370 |
| HpyF3I | CTNAG | 3 cut(s) | 185, 528, 566 |
| HpySE526I | ACGT | 2 cut(s) | 141, 267 |
| Hsp92II | CATG | 5 cut(s) | 74, 124, 319, 517, 521 |
| KspI | CCGCGG | 1 cut(s) | 252 |
| Kzo9I | GATC | 3 cut(s) | 108, 274, 457 |
| LmnI | GCTCC | 2 cut(s) | 155, 445 |
| LpnPI | CCDG | 4 cut(s) | 355, 382, 399, 558 |
| Lsp1109I | GCAGC | 1 cut(s) | 432 |
| MaeI | CTAG | 3 cut(s) | 384, 407, 491 |
| MaeII | ACGT | 2 cut(s) | 141, 267 |
| MaeIII | GTNAC | 3 cut(s) | 207, 307, 389 |
| MalI | GATC | 3 cut(s) | 110, 276, 459 |
| MboI | GATC | 3 cut(s) | 108, 274, 457 |
| MboII | GAAGA | 5 cut(s) | 118, 239, 266, 272, 565 |
| MflI | RGATCY | 1 cut(s) | 108 |
| MhlI | GDGCHC | 2 cut(s) | 152, 346 |
| MlsI | TGGCCA | 1 cut(s) | 326 |
| MluNI | TGGCCA | 1 cut(s) | 326 |
| MlyI | GAGTC | 3 cut(s) | 23, 118, 504 |
| MnlI | CCTC | 8 cut(s) | 151, 180, 214, 223, 226, 250, 256, 523 |
| Mox20I | TGGCCA | 1 cut(s) | 326 |
| Mph1103I | ATGCAT | 1 cut(s) | 519 |
| MscI | TGGCCA | 1 cut(s) | 326 |
| MseI | TTAA | 5 cut(s) | 21, 113, 462, 474, 486 |
| MslI | CAYNNNNRTG | 3 cut(s) | 314, 432, 518 |
| Msp20I | TGGCCA | 1 cut(s) | 326 |
| MspA1I | CMGCKG | 1 cut(s) | 251 |
| MspCI | CTTAAG | 1 cut(s) | 112 |
| MspR9I | CCNGG | 1 cut(s) | 370 |
| Mva1269I | GAATGC | 1 cut(s) | 307 |
| MvaI | CCWGG | 1 cut(s) | 370 |
| MvnI | CGCG | 1 cut(s) | 251 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 248, 370 |
| NdeI | CATATG | 1 cut(s) | 429 |
| NdeII | GATC | 3 cut(s) | 108, 274, 457 |
| NlaIII | CATG | 5 cut(s) | 74, 124, 319, 517, 521 |
| NmeAIII | GCCGAG | 1 cut(s) | 399 |
| NmuCI | GTSAC | 3 cut(s) | 207, 307, 389 |
| NsiI | ATGCAT | 1 cut(s) | 519 |
| NspI | RCATGY | 1 cut(s) | 521 |
| PctI | GAATGC | 1 cut(s) | 307 |
| PfeI | GAWTC | 2 cut(s) | 161, 410 |
| PflFI | GACNNNGTC | 1 cut(s) | 269 |
| PkrI | GCNGC | 1 cut(s) | 422 |
| Ple19I | CGATCG | 1 cut(s) | 277 |
| PleI | GAGTC | 3 cut(s) | 22, 118, 504 |
| PpsI | GAGTC | 3 cut(s) | 22, 118, 504 |
| Psp6I | CCWGG | 1 cut(s) | 368 |
| PspGI | CCWGG | 1 cut(s) | 368 |
| PspPI | GGNCC | 1 cut(s) | 117 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 185, 217 |
| PstNI | CAGNNNCTG | 1 cut(s) | 393 |
| PsuI | RGATCY | 1 cut(s) | 108 |
| PsyI | GACNNNGTC | 1 cut(s) | 269 |
| PvuI | CGATCG | 1 cut(s) | 277 |
| RsaI | GTAC | 2 cut(s) | 29, 69 |
| RsaNI | GTAC | 2 cut(s) | 28, 68 |
| RseI | CAYNNNNRTG | 3 cut(s) | 314, 432, 518 |
| SacII | CCGCGG | 1 cut(s) | 252 |
| SaqAI | TTAA | 5 cut(s) | 21, 113, 462, 474, 486 |
| SatI | GCNGC | 1 cut(s) | 421 |
| Sau3AI | GATC | 3 cut(s) | 108, 274, 457 |
| Sau96I | GGNCC | 1 cut(s) | 117 |
| SchI | GAGTC | 3 cut(s) | 23, 118, 504 |
| ScrFI | CCNGG | 1 cut(s) | 370 |
| SduI | GDGCHC | 2 cut(s) | 152, 346 |
| SetI | ASST | 9 cut(s) | 119, 144, 244, 270, 371, 450, 473, 534, 564 |
| Sfr303I | CCGCGG | 1 cut(s) | 252 |
| SgrBI | CCGCGG | 1 cut(s) | 252 |
| SinI | GGWCC | 1 cut(s) | 117 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 314, 432, 518 |
| SmlI | CTYRAG | 1 cut(s) | 112 |
| SmoI | CTYRAG | 1 cut(s) | 112 |
| SsiI | CCGC | 2 cut(s) | 249, 251 |
| SspMI | CTAG | 3 cut(s) | 384, 407, 491 |
| StyD4I | CCNGG | 1 cut(s) | 368 |
| TaaI | ACNGT | 3 cut(s) | 297, 313, 395 |
| TaiI | ACGT | 2 cut(s) | 144, 270 |
| TaqI | TCGA | 3 cut(s) | 37, 102, 273 |
| TatI | WGTACW | 1 cut(s) | 67 |
| TfiI | GAWTC | 2 cut(s) | 161, 410 |
| Tru1I | TTAA | 5 cut(s) | 21, 113, 462, 474, 486 |
| Tru9I | TTAA | 5 cut(s) | 21, 113, 462, 474, 486 |
| TscAI | CASTG | 3 cut(s) | 302, 316, 394 |
| TseFI | GTSAC | 3 cut(s) | 207, 307, 389 |
| TseI | GCWGC | 1 cut(s) | 420 |
| Tsp45I | GTSAC | 3 cut(s) | 207, 307, 389 |
| TspDTI | ATGAA | 2 cut(s) | 206, 480 |
| TspRI | CASTG | 3 cut(s) | 302, 316, 394 |
| Tth111I | GACNNNGTC | 1 cut(s) | 269 |
| Vha464I | CTTAAG | 1 cut(s) | 112 |
| VpaK11BI | GGWCC | 1 cut(s) | 117 |
| XbaI | TCTAGA | 1 cut(s) | 406 |
| XceI | RCATGY | 1 cut(s) | 521 |
| XspI | CTAG | 3 cut(s) | 384, 407, 491 |
| Zsp2I | ATGCAT | 1 cut(s) | 519 |