gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Pol_BBD | PF22936 | 21 - 100 | 7.6e-23 | Pol polyprotein, beta-barrel domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 196 |
| AgsI | TTSAA | 1 cut(s) | 149 |
| AluBI | AGCT | 2 cut(s) | 137, 437 |
| AluI | AGCT | 2 cut(s) | 137, 437 |
| Alw26I | GTCTC | 1 cut(s) | 451 |
| AlwI | GGATC | 1 cut(s) | 196 |
| AspS9I | GGNCC | 1 cut(s) | 341 |
| AsuC2I | CCSGG | 1 cut(s) | 249 |
| AsuHPI | GGTGA | 1 cut(s) | 61 |
| AvaII | GGWCC | 1 cut(s) | 341 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 228, 260 |
| BccI | CCATC | 2 cut(s) | 332, 352 |
| BciVI | GTATCC | 1 cut(s) | 290 |
| BcnI | CCSGG | 1 cut(s) | 249 |
| BcoDI | GTCTC | 1 cut(s) | 451 |
| BfaI | CTAG | 1 cut(s) | 438 |
| BfuI | GTATCC | 1 cut(s) | 290 |
| BglII | AGATCT | 1 cut(s) | 163 |
| Bme1390I | CCNGG | 1 cut(s) | 249 |
| Bme18I | GGWCC | 1 cut(s) | 341 |
| BmgT120I | GGNCC | 1 cut(s) | 341 |
| BmrFI | CCNGG | 1 cut(s) | 249 |
| BpmI | CTGGAG | 1 cut(s) | 180 |
| BpuMI | CCSGG | 1 cut(s) | 249 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 153, 183 |
| Bse1I | ACTGG | 2 cut(s) | 163, 354 |
| Bse3DI | GCAATG | 1 cut(s) | 334 |
| BseGI | GGATG | 1 cut(s) | 292 |
| BseMI | GCAATG | 1 cut(s) | 334 |
| BseMII | CTCAG | 3 cut(s) | 283, 405, 446 |
| BseNI | ACTGG | 2 cut(s) | 163, 354 |
| BsiSI | CCGG | 1 cut(s) | 249 |
| BsmAI | GTCTC | 1 cut(s) | 451 |
| BsmI | GAATGC | 1 cut(s) | 359 |
| Bsp143I | GATC | 2 cut(s) | 163, 188 |
| BspCNI | CTCAG | 3 cut(s) | 282, 406, 447 |
| BspPI | GGATC | 1 cut(s) | 196 |
| BsrDI | GCAATG | 1 cut(s) | 334 |
| BsrI | ACTGG | 2 cut(s) | 163, 354 |
| BssMI | GATC | 2 cut(s) | 163, 188 |
| Bst4CI | ACNGT | 1 cut(s) | 34 |
| BstDEI | CTNAG | 3 cut(s) | 269, 414, 455 |
| BstF5I | GGATG | 1 cut(s) | 292 |
| BstKTI | GATC | 2 cut(s) | 166, 191 |
| BstMAI | GTCTC | 1 cut(s) | 451 |
| BstMBI | GATC | 2 cut(s) | 163, 188 |
| BstSCI | CCNGG | 1 cut(s) | 247 |
| BstX2I | RGATCY | 2 cut(s) | 163, 188 |
| BstYI | RGATCY | 2 cut(s) | 163, 188 |
| BsuI | GTATCC | 1 cut(s) | 290 |
| BtsCI | GGATG | 1 cut(s) | 292 |
| BtsIMutI | CAGTG | 4 cut(s) | 30, 277, 347, 398 |
| Cfr13I | GGNCC | 1 cut(s) | 341 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 387, 422 |
| CviAII | CATG | 3 cut(s) | 91, 293, 468 |
| CviJI | RGCY | 2 cut(s) | 137, 437 |
| CviKI_1 | RGCY | 2 cut(s) | 137, 437 |
| DdeI | CTNAG | 3 cut(s) | 269, 414, 455 |
| DpnI | GATC | 2 cut(s) | 165, 190 |
| DpnII | GATC | 2 cut(s) | 163, 188 |
| DraI | TTTAAA | 1 cut(s) | 255 |
| Eco47I | GGWCC | 1 cut(s) | 341 |
| FaeI | CATG | 3 cut(s) | 94, 296, 471 |
| FaiI | YATR | 9 cut(s) | 21, 66, 68, 92, 225, 294, 336, 365, 469 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 248, 280 |
| FatI | CATG | 3 cut(s) | 90, 292, 467 |
| FokI | GGATG | 1 cut(s) | 299 |
| FspBI | CTAG | 1 cut(s) | 438 |
| GsuI | CTGGAG | 1 cut(s) | 180 |
| HapII | CCGG | 1 cut(s) | 249 |
| Hin1II | CATG | 3 cut(s) | 94, 296, 471 |
| HinfI | GANTC | 2 cut(s) | 10, 418 |
| HpaII | CCGG | 1 cut(s) | 249 |
| HphI | GGTGA | 1 cut(s) | 61 |
| Hpy166II | GTNNAC | 1 cut(s) | 443 |
| Hpy188I | TCNGA | 1 cut(s) | 415 |
| Hpy8I | GTNNAC | 1 cut(s) | 443 |
| HpyCH4III | ACNGT | 1 cut(s) | 34 |
| HpyCH4IV | ACGT | 1 cut(s) | 239 |
| HpyCH4V | TGCA | 3 cut(s) | 23, 179, 327 |
| HpyF3I | CTNAG | 3 cut(s) | 269, 414, 455 |
| HpySE526I | ACGT | 1 cut(s) | 239 |
| Hsp92II | CATG | 3 cut(s) | 94, 296, 471 |
| Kzo9I | GATC | 2 cut(s) | 163, 188 |
| LpnPI | CCDG | 6 cut(s) | 81, 123, 144, 165, 262, 335 |
| MaeI | CTAG | 1 cut(s) | 438 |
| MaeII | ACGT | 1 cut(s) | 239 |
| MaeIII | GTNAC | 2 cut(s) | 34, 235 |
| MalI | GATC | 2 cut(s) | 165, 190 |
| MboI | GATC | 2 cut(s) | 163, 188 |
| MboII | GAAGA | 3 cut(s) | 236, 385, 388 |
| MflI | RGATCY | 2 cut(s) | 163, 188 |
| MnlI | CCTC | 2 cut(s) | 112, 308 |
| MseI | TTAA | 1 cut(s) | 254 |
| MslI | CAYNNNNRTG | 1 cut(s) | 352 |
| MspI | CCGG | 1 cut(s) | 249 |
| MspR9I | CCNGG | 1 cut(s) | 249 |
| Mva1269I | GAATGC | 1 cut(s) | 359 |
| NciI | CCSGG | 1 cut(s) | 249 |
| NdeII | GATC | 2 cut(s) | 163, 188 |
| NlaIII | CATG | 3 cut(s) | 94, 296, 471 |
| NmuCI | GTSAC | 1 cut(s) | 34 |
| PctI | GAATGC | 1 cut(s) | 359 |
| PfeI | GAWTC | 2 cut(s) | 10, 418 |
| PspPI | GGNCC | 1 cut(s) | 341 |
| PsuI | RGATCY | 2 cut(s) | 163, 188 |
| RseI | CAYNNNNRTG | 1 cut(s) | 352 |
| SaqAI | TTAA | 1 cut(s) | 254 |
| Sau3AI | GATC | 2 cut(s) | 163, 188 |
| Sau96I | GGNCC | 1 cut(s) | 341 |
| ScrFI | CCNGG | 1 cut(s) | 249 |
| SetI | ASST | 8 cut(s) | 51, 123, 139, 242, 319, 392, 407, 439 |
| SinI | GGWCC | 1 cut(s) | 341 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 352 |
| SspMI | CTAG | 1 cut(s) | 438 |
| StyD4I | CCNGG | 1 cut(s) | 247 |
| TaaI | ACNGT | 1 cut(s) | 34 |
| TaiI | ACGT | 1 cut(s) | 242 |
| TfiI | GAWTC | 2 cut(s) | 10, 418 |
| Tru1I | TTAA | 1 cut(s) | 254 |
| Tru9I | TTAA | 1 cut(s) | 254 |
| TscAI | CASTG | 4 cut(s) | 37, 277, 354, 405 |
| TseFI | GTSAC | 1 cut(s) | 34 |
| Tsp45I | GTSAC | 1 cut(s) | 34 |
| TspDTI | ATGAA | 1 cut(s) | 303 |
| TspRI | CASTG | 4 cut(s) | 37, 277, 354, 405 |
| VpaK11BI | GGWCC | 1 cut(s) | 341 |
| XspI | CTAG | 1 cut(s) | 438 |