Prupe.4G109700_v2.0.a1

Belongs to the MIP aquaporin (TC 1.A.8) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000106
Physical Location & Seq
Reverse (-)
5784916 .. 5788237
3322 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G109700.1

Sequence Viewer

Length: 993 bp
ATGAGAGAGTTGTGGGCTGGTGTGCATGTGAGCCGCACCAAAGGAGAGAAAGCATGCAAAGGTGCGTGGGCTGCTGTGCTTCAGCTGCACCAAGGCAAGGGAGAGAGAGCACGGCAGAGAGGGAGTGGACTGCTTGTGAGATGCAAGCAAGCAGTCCCACGAACTCCTGGAGGATGTTTCAGCTGGGAGTTAGCTGGGTTCATCAAGGGTTCAAGAGAGGGTATATCTCTTGGGGTGAGAGTGATTTTCACATGTATGAGAGAGGGTGTGCAAGGGGTGTATCCTATTGGATACGGGACTCAGATGTCTCCGGAGAGCACTAAAGTTTCCAAGTCATCAACTGTGAGAGCAAAGGCTTCTACTTTTTCAACACATCGGACAGATTTGAACGAAGCAGCTAATCCCATATTTAATGCCCGCACCAAACACGTTAAAATTGACTACCATTATATCCGACAACTTATCACCAGTAACTCCATTTCCATCAGCCATGTTTCCTCTCCTTATCAAATTGCTGACACCTTCACCAAGAGCTTACCTAAAGCCCAATTTCAACACTTGAGTTCCATGCTTATCATTGTCTCAACACAACTCCGCTTGAGAGCGTATGTTAAGAAACAAAACAATCAAATCATCCAACGACTAGAAAGAGAAGAAAAAAAATACTTAAGGCACTCAACAAACTTGCACCCGAACCAGCAATCATCAACGGTGAGAGCAAAGGCTTCTACTTTTTCGGAACATCGGATAGTTTTGAACGAAACAGGCTGGTCATCGAAAGTTTTGGTTTTTGCTGCCCAATCCAGAAGTTGTTCTCCAACAAGCATACCTTTGCCAAGAGTTTCAAATGAGGTTGAGGGATGTGCATCTCCAACATCCCTAATTGGCAGGTATGCCTGCATAGAGCCTGCTATAATAATGAGCATTGCGTTAAGTGGCTGTCCCGCTTCAACCAAAATCTCATTCTCCTTGAAGATCTTTGGCTTGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MIP

Protein Analysis

331

Amino Acids

36.46

Weight (kDa)

10.22

Isoelectric Point (pI)

40.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20980 AT3G21000
fragaria_vesca FvH4_1g15931 FvH4_1g15931 FvH4_1g18381 FvH4_1g18382 FvH4_1g22571 FvH4_1g24950 FvH4_1g29372 FvH4_2g03582 FvH4_2g09851 FvH4_2g13112 FvH4_2g20843 FvH4_2g22701 FvH4_2g22702 FvH4_2g23403 FvH4_2g40201 FvH4_3g03542 FvH4_3g03543 FvH4_3g04761 FvH4_3g10464 FvH4_3g12741 FvH4_3g15781 FvH4_3g30981 FvH4_4g00985 FvH4_4g07035 FvH4_4g08192 FvH4_4g08211 FvH4_4g08553 FvH4_4g14242 FvH4_4g14243 FvH4_4g14641 FvH4_4g14843 FvH4_4g14844 FvH4_4g15061 FvH4_4g16281 FvH4_4g19152 FvH4_4g26451 FvH4_5g06442 FvH4_5g22521 FvH4_5g24301 FvH4_5g38641 FvH4_6g02393 FvH4_6g12782 FvH4_6g13871 FvH4_6g19391 FvH4_6g20105 FvH4_6g21292 FvH4_6g23581 FvH4_6g29153 FvH4_6g29691 FvH4_6g30871 FvH4_6g33351 FvH4_6g37042 FvH4_6g38781 FvH4_6g40340 FvH4_7g11221 FvH4_7g23352 FvH4_7g23352 FvH4_7g31212 FvH4_7g32172 FvH4_7g32173 FvH4_7g33701
malus_domestica MD03G1006900.v1.1 MD04G1039100.v1.1 MD04G1239100.v1.1 MD05G1048700.v1.1 MD08G1001800.v1.1 MD09G1165800.v1.1 MD11G1065200.v1.1 MD11G1138200.v1.1 MD14G1033300.v1.1 MD14G1173900.v1.1 MD15G1218200.v1.1 MD16G1034000.v1.1
prunus_persica Prupe.1G219500_v2.0.a1 Prupe.2G169400_v2.0.a1 Prupe.4G109700_v2.0.a1 Prupe.7G022000_v2.0.a1
pyrus_communis pycom01g02000 pycom02g13350 pycom03g01010 pycom04g05000 pycom04g06100 pycom05g05580 pycom05g09950 pycom05g13280 pycom05g26610 pycom06g05940 pycom06g07760 pycom07g06120 pycom07g24780 pycom08g08820 pycom09g03600 pycom09g07200 pycom10g01280 pycom10g06730 pycom10g08410 pycom10g25520 pycom11g00470 pycom11g05250 pycom11g25180 pycom12g08050 pycom13g14760 pycom13g28170 pycom15g14310 pycom15g19880 pycom15g24230 pycom15g33640 pycom16g02150 pycom16g16240 pycom16g20050 pycom16g21090 pycom17g06100
rosa_chinensis RchiOBHm_Chr1g0322161 RchiOBHm_Chr1g0326341 RchiOBHm_Chr1g0357701 RchiOBHm_Chr1g0379861 RchiOBHm_Chr1g0383421 RchiOBHm_Chr2g0093981 RchiOBHm_Chr2g0139051 RchiOBHm_Chr2g0145501 RchiOBHm_Chr3g0450971 RchiOBHm_Chr3g0451441 RchiOBHm_Chr3g0457411 RchiOBHm_Chr4g0436261 RchiOBHm_Chr5g0051431 RchiOBHm_Chr5g0064031 RchiOBHm_Chr5g0073141 RchiOBHm_Chr5g0080061 RchiOBHm_Chr7g0200561 RchiOBHm_Chr7g0235911
rosa_laevigata RLG00000000145 RLG00000000429 RLG00000020339 RLG00000035212
rosa_multiflora Rmu_co7977988.1_g000001 Rmu_co8037866.1_g000001 Rmu_co8243895.1_g000001 Rmu_co8363787.1_g000001 Rmu_co8381003.1_g000001 Rmu_sc0000263.1_g000006 Rmu_sc0000349.1_g000002 Rmu_sc0000455.1_g000031 Rmu_sc0000936.1_g000022 Rmu_sc0001035.1_g000023 Rmu_sc0001169.1_g000019 Rmu_sc0001250.1_g000026 Rmu_sc0002200.1_g000051 Rmu_sc0002230.1_g000027 Rmu_sc0002591.1_g000039 Rmu_sc0003182.1_g000003 Rmu_sc0003441.1_g000068 Rmu_sc0003722.1_g000018 Rmu_sc0003764.1_g000007 Rmu_sc0006014.1_g000016 Rmu_sc0012582.1_g000002 Rmu_sc0013519.1_g000002 Rmu_sc0014550.1_g000005 Rmu_sc0014857.1_g000007 Rmu_sc0019855.1_g000001 Rmu_sc0030839.1_g000001 Rmu_sc0031308.1_g000001
rosa_roxburghii Rroxscaffold_1G00011290 Rroxscaffold_1G00041340 Rroxscaffold_1G00053780 Rroxscaffold_1G00059130 Rroxscaffold_1G00061580 Rroxscaffold_2G00080940 Rroxscaffold_2G00109540 Rroxscaffold_3G00228400 Rroxscaffold_3G00237710 Rroxscaffold_4G00285210 Rroxscaffold_4G00299600 Rroxscaffold_4G00324940 Rroxscaffold_4G00330580 Rroxscaffold_5G00333000 Rroxscaffold_5G00347920 Rroxscaffold_5G00375310 Rroxscaffold_6G00394760 Rroxscaffold_6G00406260 Rroxscaffold_7G00165690 Rroxscaffold_7G00187680
rosa_rugosa Rorug01G0050200 Rorug02G0273800 Rorug06G0490600 Rorug06G0490600 Rorug06G0490700
rosa_samantha Rh1AG348400 Rh5AG222600 Rh6DG000500 Rh6DG194500 Rh7BG452700
rosa_wichuraiana Rw0G003060 Rw0G010530 Rw0G012970 Rw0G022560 Rw0G023390 Rw1G001270 Rw1G001530 Rw1G006070 Rw1G008210 Rw1G022090 Rw1G023320 Rw2G003790 Rw2G004140 Rw2G005280 Rw2G006460 Rw2G019620 Rw2G019840 Rw2G022530 Rw2G023280 Rw2G024990 Rw2G042380 Rw2G051390 Rw3G001640 Rw3G016720 Rw3G017100 Rw3G020890 Rw3G020900 Rw3G021100 Rw4G004820 Rw4G014950 Rw4G030920 Rw4G031400 Rw5G008500 Rw5G017950 Rw5G020170 Rw5G030160 Rw5G033050 Rw5G034640 Rw5G043920 Rw6G005060 Rw6G005540 Rw6G006720 Rw6G008460 Rw6G008670 Rw6G014780 Rw6G019100 Rw6G019350 Rw6G026310 Rw7G016810 Rw7G019180 Rw7G022890 Rw7G025880 Rw7G026390 Rw7G028340 Rw7G034850 Rw7G035170 Rw7G035420 Rw7G037990 Rw7G041560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 304
Acc36I ACCTGC 1 cut(s) 879
AccIII TCCGGA 1 cut(s) 310
AciI CCGC 4 cut(s) 34, 418, 595, 945
AcuI CTGAAG 1 cut(s) 65
AfiI CCNNNNNNNGG 1 cut(s) 97
AflII CTTAAG 1 cut(s) 667
AflIII ACRYGT 2 cut(s) 251, 427
AgsI TTSAA 8 cut(s) 213, 369, 388, 554, 757, 846, 951, 973
AjnI CCWGG 1 cut(s) 166
AjuI GAANNNNNNNTTGG 2 cut(s) 947, 979
AluBI AGCT 5 cut(s) 85, 183, 194, 398, 534
AluI AGCT 5 cut(s) 85, 183, 194, 398, 534
Alw21I GWGCWC 2 cut(s) 112, 320
Alw26I GTCTC 2 cut(s) 312, 586
Aor13HI TCCGGA 1 cut(s) 310
ApeKI GCWGC 4 cut(s) 71, 85, 395, 794
Asp700I GAANNNNTTC 1 cut(s) 811
AsuHPI GGTGA 4 cut(s) 247, 457, 517, 724
Bbv12I GWGCWC 2 cut(s) 112, 320
BbvI GCAGC 4 cut(s) 58, 72, 407, 781
BccI CCATC 1 cut(s) 491
BceAI ACGGC 1 cut(s) 128
BciT130I CCWGG 1 cut(s) 168
BciVI GTATCC 2 cut(s) 284, 291
BcoDI GTCTC 2 cut(s) 312, 586
BfaI CTAG 1 cut(s) 644
BfrI CTTAAG 1 cut(s) 667
BfuAI ACCTGC 1 cut(s) 879
BfuI GTATCC 2 cut(s) 284, 291
BglII AGATCT 1 cut(s) 975
BisI GCNGC 5 cut(s) 34, 72, 86, 396, 795
BlsI GCNGC 5 cut(s) 35, 73, 87, 397, 796
Bme1390I CCNGG 1 cut(s) 168
BmrFI CCNGG 1 cut(s) 168
BmsI GCATC 2 cut(s) 131, 875
BpmI CTGGAG 1 cut(s) 189
BpuEI CTTGAG 2 cut(s) 580, 619
BsaBI GATNNNNATC 1 cut(s) 865
BsaJI CCNNGG 1 cut(s) 91
BsaWI WCCGGW 1 cut(s) 310
Bsc4I CCNNNNNNNGG 1 cut(s) 97
Bse1I ACTGG 1 cut(s) 468
Bse3DI GCAATG 1 cut(s) 924
Bse8I GATNNNNATC 1 cut(s) 865
BseAI TCCGGA 1 cut(s) 310
BseBI CCWGG 1 cut(s) 168
BseDI CCNNGG 1 cut(s) 91
BseGI GGATG 4 cut(s) 179, 633, 866, 875
BseJI GATNNNNATC 1 cut(s) 865
BseLI CCNNNNNNNGG 1 cut(s) 97
BseMI GCAATG 1 cut(s) 924
BseMII CTCAG 1 cut(s) 314
BseNI ACTGG 1 cut(s) 468
BseXI GCAGC 4 cut(s) 58, 72, 407, 781
BseYI CCCAGC 2 cut(s) 183, 194
BsgI GTGCAG 1 cut(s) 71
BsiHKAI GWGCWC 2 cut(s) 112, 320
BsiSI CCGG 1 cut(s) 311
BslFI GGGAC 3 cut(s) 140, 310, 927
BslI CCNNNNNNNGG 1 cut(s) 97
BsmAI GTCTC 2 cut(s) 312, 586
BsmFI GGGAC 3 cut(s) 140, 310, 927
Bsp1286I GDGCHC 2 cut(s) 112, 320
Bsp13I TCCGGA 1 cut(s) 310
Bsp143I GATC 1 cut(s) 975
BspACI CCGC 4 cut(s) 34, 418, 595, 945
BspCNI CTCAG 1 cut(s) 313
BspEI TCCGGA 1 cut(s) 310
BspMI ACCTGC 1 cut(s) 879
BspTI CTTAAG 1 cut(s) 667
BsrDI GCAATG 1 cut(s) 924
BsrI ACTGG 1 cut(s) 468
BssECI CCNNGG 1 cut(s) 91
BssMI GATC 1 cut(s) 975
BssT1I CCWWGG 1 cut(s) 91
Bst2UI CCWGG 1 cut(s) 168
Bst4CI ACNGT 2 cut(s) 343, 712
BstAFI CTTAAG 1 cut(s) 667
BstC8I GCNNGC 6 cut(s) 55, 146, 150, 418, 898, 909
BstDEI CTNAG 1 cut(s) 300
BstF5I GGATG 4 cut(s) 179, 633, 866, 875
BstKTI GATC 1 cut(s) 978
BstMAI GTCTC 2 cut(s) 312, 586
BstMBI GATC 1 cut(s) 975
BstMWI GCNNNNNNNGC 2 cut(s) 71, 85
BstNI CCWGG 1 cut(s) 168
BstNSI RCATGY 3 cut(s) 29, 57, 255
BstSCI CCNGG 1 cut(s) 166
BstV1I GCAGC 4 cut(s) 58, 72, 407, 781
BstX2I RGATCY 1 cut(s) 975
BstYI RGATCY 1 cut(s) 975
BsuI GTATCC 2 cut(s) 284, 291
BtsCI GGATG 4 cut(s) 179, 633, 866, 875
BveI ACCTGC 1 cut(s) 879
Cac8I GCNNGC 6 cut(s) 55, 146, 150, 418, 898, 909
CviAII CATG 5 cut(s) 26, 54, 252, 491, 568
DdeI CTNAG 1 cut(s) 300
DpnI GATC 1 cut(s) 977
DpnII GATC 1 cut(s) 975
DrdI GACNNNNNNGTC 1 cut(s) 304
DseDI GACNNNNNNGTC 1 cut(s) 304
Eco130I CCWWGG 1 cut(s) 91
Eco57I CTGAAG 1 cut(s) 65
EcoRII CCWGG 1 cut(s) 166
EcoT14I CCWWGG 1 cut(s) 91
ErhI CCWWGG 1 cut(s) 91
FaeI CATG 5 cut(s) 29, 57, 255, 494, 571
FalI AAGNNNNNCTT 2 cut(s) 814, 846
FaqI GGGAC 3 cut(s) 140, 310, 927
FatI CATG 5 cut(s) 25, 53, 251, 490, 567
FauI CCCGC 2 cut(s) 425, 952
Fnu4HI GCNGC 5 cut(s) 34, 72, 86, 396, 795
FokI GGATG 4 cut(s) 186, 620, 862, 873
Fsp4HI GCNGC 5 cut(s) 34, 72, 86, 396, 795
FspBI CTAG 1 cut(s) 644
GluI GCNGC 5 cut(s) 34, 72, 86, 396, 795
GsaI CCCAGC 2 cut(s) 187, 198
GsuI CTGGAG 1 cut(s) 189
HapII CCGG 1 cut(s) 311
Hin1II CATG 5 cut(s) 29, 57, 255, 494, 571
HinfI GANTC 1 cut(s) 298
HpaII CCGG 1 cut(s) 311
HphI GGTGA 4 cut(s) 247, 457, 517, 724
Hpy166II GTNNAC 1 cut(s) 128
Hpy188I TCNGA 5 cut(s) 303, 378, 455, 739, 747
Hpy188III TCNNGA 3 cut(s) 213, 311, 804
Hpy8I GTNNAC 1 cut(s) 128
HpyAV CCTTC 1 cut(s) 532
HpyCH4III ACNGT 2 cut(s) 343, 712
HpyCH4IV ACGT 1 cut(s) 429
HpyCH4V TGCA 8 cut(s) 25, 57, 88, 144, 271, 688, 866, 900
HpyF10VI GCNNNNNNNGC 2 cut(s) 71, 85
HpyF3I CTNAG 1 cut(s) 300
HpySE526I ACGT 1 cut(s) 429
Hsp92II CATG 5 cut(s) 29, 57, 255, 494, 571
Kpn2I TCCGGA 1 cut(s) 310
Kzo9I GATC 1 cut(s) 975
Lsp1109I GCAGC 4 cut(s) 58, 72, 407, 781
LweI GCATC 2 cut(s) 131, 875
MaeI CTAG 1 cut(s) 644
MaeII ACGT 1 cut(s) 429
MaeIII GTNAC 1 cut(s) 470
MalI GATC 1 cut(s) 977
MboI GATC 1 cut(s) 975
MboII GAAGA 2 cut(s) 665, 985
MflI RGATCY 1 cut(s) 975
MhlI GDGCHC 2 cut(s) 112, 320
MluCI AATT 4 cut(s) 435, 510, 548, 882
MlyI GAGTC 1 cut(s) 292
MmeI TCCRAC 4 cut(s) 478, 661, 842, 896
MnlI CCTC 7 cut(s) 113, 164, 211, 256, 508, 844, 850
MroI TCCGGA 1 cut(s) 310
MroXI GAANNNNTTC 1 cut(s) 811
MseI TTAA 5 cut(s) 411, 432, 612, 668, 932
MslI CAYNNNNRTG 1 cut(s) 254
MspA1I CMGCKG 2 cut(s) 85, 183
MspCI CTTAAG 1 cut(s) 667
MspI CCGG 1 cut(s) 311
MspR9I CCNGG 1 cut(s) 168
MvaI CCWGG 1 cut(s) 168
MwoI GCNNNNNNNGC 2 cut(s) 71, 85
NdeII GATC 1 cut(s) 975
NlaIII CATG 5 cut(s) 29, 57, 255, 494, 571
NspI RCATGY 3 cut(s) 29, 57, 255
PaeI GCATGC 1 cut(s) 57
PciI ACATGT 1 cut(s) 251
PdmI GAANNNNTTC 1 cut(s) 811
PfoI TCCNGGA 1 cut(s) 166
PkrI GCNGC 5 cut(s) 35, 73, 87, 397, 796
PleI GAGTC 1 cut(s) 292
PpsI GAGTC 1 cut(s) 292
PscI ACATGT 1 cut(s) 251
Psp6I CCWGG 1 cut(s) 166
PspFI CCCAGC 2 cut(s) 183, 194
PspGI CCWGG 1 cut(s) 166
PsuI RGATCY 1 cut(s) 975
PvuII CAGCTG 2 cut(s) 85, 183
RseI CAYNNNNRTG 1 cut(s) 254
SaqAI TTAA 5 cut(s) 411, 432, 612, 668, 932
SatI GCNGC 5 cut(s) 34, 72, 86, 396, 795
Sau3AI GATC 1 cut(s) 975
SchI GAGTC 1 cut(s) 292
ScrFI CCNGG 1 cut(s) 168
SduI GDGCHC 2 cut(s) 112, 320
SfaNI GCATC 2 cut(s) 131, 875
SmiMI CAYNNNNRTG 1 cut(s) 254
SmlI CTYRAG 4 cut(s) 559, 598, 667, 985
SmoI CTYRAG 4 cut(s) 559, 598, 667, 985
SphI GCATGC 1 cut(s) 57
Sse9I AATT 4 cut(s) 435, 510, 548, 882
SsiI CCGC 4 cut(s) 34, 418, 595, 945
SspMI CTAG 1 cut(s) 644
StyD4I CCNGG 1 cut(s) 166
StyI CCWWGG 1 cut(s) 91
TaaI ACNGT 2 cut(s) 343, 712
TaiI ACGT 1 cut(s) 432
TaqI TCGA 1 cut(s) 776
TasI AATT 4 cut(s) 435, 510, 548, 882
TauI GCSGC 1 cut(s) 36
Tru1I TTAA 5 cut(s) 411, 432, 612, 668, 932
Tru9I TTAA 5 cut(s) 411, 432, 612, 668, 932
TseI GCWGC 4 cut(s) 71, 85, 395, 794
TspDTI ATGAA 1 cut(s) 190
Vha464I CTTAAG 1 cut(s) 667
XceI RCATGY 3 cut(s) 29, 57, 255
XmnI GAANNNNTTC 1 cut(s) 811
XspI CTAG 1 cut(s) 644
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.