FvH4_2g22702

Reverse transcriptase (RNA-dependent DNA polymerase)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000106
Physical Location & Seq
Reverse (-)
18649398 .. 18654821
5424 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g22702.t1

Sequence Viewer

Length: 726 bp
ATGGGTAGTGATAGGGTTCATACTTTCGGTCAAACACAAATACCTCCAGTCACTAGTCATCCCATTCAAGACAACCATGCTAGAGATATACATCCAGGCAATATCAATCCGCCTAGAAAGTCTGATCAAACACAGCATGCTGGGTCTTCGGGTGATCTGATATCTACAAGGGTTTTAGGAGATAACTCACTAGTTCCATCTTCTGTTGAAGATAGGGTTCCAACTGTCCCTCCTCATCCCCCATCCACACAAACAGCTTCCGCTCCTACACCCTCACCACCTTTGCATGCCCCTCTTCTCGAAAATCAGTCCCATCCTCTGCCCCGCAAGTCTTCTCGTCCCACAAGAACTCCAGACTTTCTGCATGACTACCATGTTGAGGCAGCTCTTCCTTCTCGTGACCTGCCGGCATCTTCTACGGGTTCAGAAGTGTCTGAGAGTTATTTGAAGCCAGACACTGAACGGGGAGAGGACAGACGTTTTGGAGGAGAAGGAGGAGAACTGAAGTCTTGCATTTGGGAGCAAGTATTAGATGGGTTCAAGGACTCATTTGGTTCATTGAACTCCTTGATTAAGATGGGTGAGTTTGATCCCACAGTGAGCAAGCAGGGAACAAGAATAGTCCTTGGGATGAAAAGCCTCATAACAGTTAGTGCACTAGTCTGTCGTTGTCAATTCAGTATTATGTTGTGCGGTCTGGTTCAACATGCATTGGTGAATAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2

Protein Analysis

242

Amino Acids

26.09

Weight (kDa)

6.24

Isoelectric Point (pI)

40.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20980 AT3G21000
fragaria_vesca FvH4_1g15931 FvH4_1g15931 FvH4_1g18381 FvH4_1g18382 FvH4_1g22571 FvH4_1g24950 FvH4_1g29372 FvH4_2g03582 FvH4_2g09851 FvH4_2g13112 FvH4_2g20843 FvH4_2g22701 FvH4_2g22702 FvH4_2g23403 FvH4_2g40201 FvH4_3g03542 FvH4_3g03543 FvH4_3g04761 FvH4_3g10464 FvH4_3g12741 FvH4_3g15781 FvH4_3g30981 FvH4_4g00985 FvH4_4g07035 FvH4_4g08192 FvH4_4g08211 FvH4_4g08553 FvH4_4g14242 FvH4_4g14243 FvH4_4g14641 FvH4_4g14843 FvH4_4g14844 FvH4_4g15061 FvH4_4g16281 FvH4_4g19152 FvH4_4g26451 FvH4_5g06442 FvH4_5g22521 FvH4_5g24301 FvH4_5g38641 FvH4_6g02393 FvH4_6g12782 FvH4_6g13871 FvH4_6g19391 FvH4_6g20105 FvH4_6g21292 FvH4_6g23581 FvH4_6g29153 FvH4_6g29691 FvH4_6g30871 FvH4_6g33351 FvH4_6g37042 FvH4_6g38781 FvH4_6g40340 FvH4_7g11221 FvH4_7g23352 FvH4_7g23352 FvH4_7g31212 FvH4_7g32172 FvH4_7g32173 FvH4_7g33701
malus_domestica MD03G1006900.v1.1 MD04G1039100.v1.1 MD04G1239100.v1.1 MD05G1048700.v1.1 MD08G1001800.v1.1 MD09G1165800.v1.1 MD11G1065200.v1.1 MD11G1138200.v1.1 MD14G1033300.v1.1 MD14G1173900.v1.1 MD15G1218200.v1.1 MD16G1034000.v1.1
prunus_persica Prupe.1G219500_v2.0.a1 Prupe.2G169400_v2.0.a1 Prupe.4G109700_v2.0.a1 Prupe.7G022000_v2.0.a1
pyrus_communis pycom01g02000 pycom02g13350 pycom03g01010 pycom04g05000 pycom04g06100 pycom05g05580 pycom05g09950 pycom05g13280 pycom05g26610 pycom06g05940 pycom06g07760 pycom07g06120 pycom07g24780 pycom08g08820 pycom09g03600 pycom09g07200 pycom10g01280 pycom10g06730 pycom10g08410 pycom10g25520 pycom11g00470 pycom11g05250 pycom11g25180 pycom12g08050 pycom13g14760 pycom13g28170 pycom15g14310 pycom15g19880 pycom15g24230 pycom15g33640 pycom16g02150 pycom16g16240 pycom16g20050 pycom16g21090 pycom17g06100
rosa_chinensis RchiOBHm_Chr1g0322161 RchiOBHm_Chr1g0326341 RchiOBHm_Chr1g0357701 RchiOBHm_Chr1g0379861 RchiOBHm_Chr1g0383421 RchiOBHm_Chr2g0093981 RchiOBHm_Chr2g0139051 RchiOBHm_Chr2g0145501 RchiOBHm_Chr3g0450971 RchiOBHm_Chr3g0451441 RchiOBHm_Chr3g0457411 RchiOBHm_Chr4g0436261 RchiOBHm_Chr5g0051431 RchiOBHm_Chr5g0064031 RchiOBHm_Chr5g0073141 RchiOBHm_Chr5g0080061 RchiOBHm_Chr7g0200561 RchiOBHm_Chr7g0235911
rosa_laevigata RLG00000000145 RLG00000000429 RLG00000020339 RLG00000035212
rosa_multiflora Rmu_co7977988.1_g000001 Rmu_co8037866.1_g000001 Rmu_co8243895.1_g000001 Rmu_co8363787.1_g000001 Rmu_co8381003.1_g000001 Rmu_sc0000263.1_g000006 Rmu_sc0000349.1_g000002 Rmu_sc0000455.1_g000031 Rmu_sc0000936.1_g000022 Rmu_sc0001035.1_g000023 Rmu_sc0001169.1_g000019 Rmu_sc0001250.1_g000026 Rmu_sc0002200.1_g000051 Rmu_sc0002230.1_g000027 Rmu_sc0002591.1_g000039 Rmu_sc0003182.1_g000003 Rmu_sc0003441.1_g000068 Rmu_sc0003722.1_g000018 Rmu_sc0003764.1_g000007 Rmu_sc0006014.1_g000016 Rmu_sc0012582.1_g000002 Rmu_sc0013519.1_g000002 Rmu_sc0014550.1_g000005 Rmu_sc0014857.1_g000007 Rmu_sc0019855.1_g000001 Rmu_sc0030839.1_g000001 Rmu_sc0031308.1_g000001
rosa_roxburghii Rroxscaffold_1G00011290 Rroxscaffold_1G00041340 Rroxscaffold_1G00053780 Rroxscaffold_1G00059130 Rroxscaffold_1G00061580 Rroxscaffold_2G00080940 Rroxscaffold_2G00109540 Rroxscaffold_3G00228400 Rroxscaffold_3G00237710 Rroxscaffold_4G00285210 Rroxscaffold_4G00299600 Rroxscaffold_4G00324940 Rroxscaffold_4G00330580 Rroxscaffold_5G00333000 Rroxscaffold_5G00347920 Rroxscaffold_5G00375310 Rroxscaffold_6G00394760 Rroxscaffold_6G00406260 Rroxscaffold_7G00165690 Rroxscaffold_7G00187680
rosa_rugosa Rorug01G0050200 Rorug02G0273800 Rorug06G0490600 Rorug06G0490600 Rorug06G0490700
rosa_samantha Rh1AG348400 Rh5AG222600 Rh6DG000500 Rh6DG194500 Rh7BG452700
rosa_wichuraiana Rw0G003060 Rw0G010530 Rw0G012970 Rw0G022560 Rw0G023390 Rw1G001270 Rw1G001530 Rw1G006070 Rw1G008210 Rw1G022090 Rw1G023320 Rw2G003790 Rw2G004140 Rw2G005280 Rw2G006460 Rw2G019620 Rw2G019840 Rw2G022530 Rw2G023280 Rw2G024990 Rw2G042380 Rw2G051390 Rw3G001640 Rw3G016720 Rw3G017100 Rw3G020890 Rw3G020900 Rw3G021100 Rw4G004820 Rw4G014950 Rw4G030920 Rw4G031400 Rw5G008500 Rw5G017950 Rw5G020170 Rw5G030160 Rw5G033050 Rw5G034640 Rw5G043920 Rw6G005060 Rw6G005540 Rw6G006720 Rw6G008460 Rw6G008670 Rw6G014780 Rw6G019100 Rw6G019350 Rw6G026310 Rw7G016810 Rw7G019180 Rw7G022890 Rw7G025880 Rw7G026390 Rw7G028340 Rw7G034850 Rw7G035170 Rw7G035420 Rw7G037990 Rw7G041560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 411
AccBSI CCGCTC 1 cut(s) 263
AciI CCGC 4 cut(s) 110, 261, 325, 693
AclWI GGATC 1 cut(s) 584
AcuI CTGAAG 1 cut(s) 524
AfiI CCNNNNNNNGG 1 cut(s) 379
AgsI TTSAA 6 cut(s) 68, 209, 448, 541, 562, 704
AhlI ACTAGT 3 cut(s) 53, 190, 658
AjnI CCWGG 1 cut(s) 94
AluBI AGCT 2 cut(s) 257, 386
AluI AGCT 2 cut(s) 257, 386
Alw21I GWGCWC 1 cut(s) 658
Alw44I GTGCAC 1 cut(s) 654
AlwI GGATC 1 cut(s) 584
AlwNI CAGNNNCTG 1 cut(s) 458
ApaLI GTGCAC 1 cut(s) 654
ApeKI GCWGC 1 cut(s) 383
ArsI GACNNNNNNTTYG 2 cut(s) 464, 496
AsuHPI GGTGA 3 cut(s) 164, 267, 593
BaeGI GKGCMC 1 cut(s) 658
BauI CACGAG 1 cut(s) 396
BbsI GAAGAC 2 cut(s) 138, 324
Bbv12I GWGCWC 1 cut(s) 658
BbvI GCAGC 1 cut(s) 395
BccI CCATC 5 cut(s) 205, 250, 321, 527, 571
BciT130I CCWGG 1 cut(s) 96
BclI TGATCA 1 cut(s) 124
BcuI ACTAGT 3 cut(s) 53, 190, 658
BfaI CTAG 5 cut(s) 54, 81, 114, 191, 659
BfuAI ACCTGC 1 cut(s) 411
BisI GCNGC 1 cut(s) 384
BlsI GCNGC 1 cut(s) 385
Bme1390I CCNGG 1 cut(s) 96
BmiI GGNNCC 1 cut(s) 219
BmrFI CCNGG 1 cut(s) 96
BmsI GCATC 1 cut(s) 419
BpiI GAAGAC 2 cut(s) 138, 324
BpmI CTGGAG 2 cut(s) 30, 336
BsaBI GATNNNNATC 1 cut(s) 90
BsaJI CCNNGG 1 cut(s) 625
BsaXI ACNNNNNCTCC 4 cut(s) 214, 244, 334, 364
Bsc4I CCNNNNNNNGG 1 cut(s) 379
Bse118I RCCGGY 1 cut(s) 406
Bse1I ACTGG 1 cut(s) 47
Bse8I GATNNNNATC 1 cut(s) 90
BseBI CCWGG 1 cut(s) 96
BseDI CCNNGG 1 cut(s) 625
BseGI GGATG 6 cut(s) 58, 91, 235, 242, 313, 636
BseJI GATNNNNATC 1 cut(s) 90
BseLI CCNNNNNNNGG 1 cut(s) 379
BseMII CTCAG 1 cut(s) 426
BseNI ACTGG 1 cut(s) 47
BseRI GAGGAG 3 cut(s) 222, 501, 510
BseSI GKGCMC 1 cut(s) 658
BseXI GCAGC 1 cut(s) 395
BseYI CCCAGC 1 cut(s) 140
BsiHKAI GWGCWC 1 cut(s) 658
BsiSI CCGG 1 cut(s) 407
BslFI GGGAC 3 cut(s) 212, 295, 324
BslI CCNNNNNNNGG 1 cut(s) 379
BsmFI GGGAC 3 cut(s) 212, 295, 324
Bsp1286I GDGCHC 1 cut(s) 658
Bsp143I GATC 3 cut(s) 124, 154, 589
BspACI CCGC 4 cut(s) 110, 261, 325, 693
BspCNI CTCAG 1 cut(s) 427
BspLI GGNNCC 1 cut(s) 219
BspMI ACCTGC 1 cut(s) 411
BspPI GGATC 1 cut(s) 584
BspQI GCTCTTC 1 cut(s) 393
BsrBI CCGCTC 1 cut(s) 263
BsrFI RCCGGY 1 cut(s) 406
BsrI ACTGG 1 cut(s) 47
BssAI RCCGGY 1 cut(s) 406
BssECI CCNNGG 1 cut(s) 625
BssMI GATC 3 cut(s) 124, 154, 589
BssSI CACGAG 1 cut(s) 396
BssT1I CCWWGG 1 cut(s) 625
Bst2BI CACGAG 1 cut(s) 396
Bst2UI CCWGG 1 cut(s) 96
Bst4CI ACNGT 3 cut(s) 226, 598, 649
Bst6I CTCTTC 2 cut(s) 300, 393
BstC8I GCNNGC 4 cut(s) 138, 288, 408, 605
BstDEI CTNAG 1 cut(s) 435
BstF5I GGATG 6 cut(s) 58, 91, 235, 242, 313, 636
BstKTI GATC 3 cut(s) 127, 157, 592
BstMBI GATC 3 cut(s) 124, 154, 589
BstNI CCWGG 1 cut(s) 96
BstNSI RCATGY 3 cut(s) 140, 290, 710
BstSCI CCNGG 1 cut(s) 94
BstSLI GKGCMC 1 cut(s) 658
BstV1I GCAGC 1 cut(s) 395
BstV2I GAAGAC 2 cut(s) 138, 324
BtsCI GGATG 6 cut(s) 58, 91, 235, 242, 313, 636
BtsIMutI CAGTG 2 cut(s) 456, 603
BveI ACCTGC 1 cut(s) 411
Cac8I GCNNGC 4 cut(s) 138, 288, 408, 605
CaiI CAGNNNCTG 1 cut(s) 458
Cfr10I RCCGGY 1 cut(s) 406
CviAII CATG 6 cut(s) 77, 137, 287, 365, 374, 707
CviJI RGCY 4 cut(s) 257, 386, 451, 639
CviKI_1 RGCY 4 cut(s) 257, 386, 451, 639
DdeI CTNAG 1 cut(s) 435
DpnI GATC 3 cut(s) 126, 156, 591
DpnII GATC 3 cut(s) 124, 154, 589
Eam1104I CTCTTC 2 cut(s) 300, 393
EarI CTCTTC 2 cut(s) 300, 393
EciI GGCGGA 1 cut(s) 99
Eco130I CCWWGG 1 cut(s) 625
Eco32I GATATC 1 cut(s) 162
Eco57I CTGAAG 1 cut(s) 524
EcoRII CCWGG 1 cut(s) 94
EcoRV GATATC 1 cut(s) 162
EcoT14I CCWWGG 1 cut(s) 625
EcoT22I ATGCAT 1 cut(s) 712
ErhI CCWWGG 1 cut(s) 625
FaeI CATG 6 cut(s) 80, 140, 290, 368, 377, 710
FaqI GGGAC 3 cut(s) 212, 295, 324
FatI CATG 6 cut(s) 76, 136, 286, 364, 373, 706
FauI CCCGC 1 cut(s) 332
FbaI TGATCA 1 cut(s) 124
Fnu4HI GCNGC 1 cut(s) 384
FokI GGATG 6 cut(s) 45, 78, 222, 229, 300, 643
Fsp4HI GCNGC 1 cut(s) 384
FspBI CTAG 5 cut(s) 54, 81, 114, 191, 659
GluI GCNGC 1 cut(s) 384
GsaI CCCAGC 1 cut(s) 144
GsuI CTGGAG 2 cut(s) 30, 336
HapII CCGG 1 cut(s) 407
Hin1II CATG 6 cut(s) 80, 140, 290, 368, 377, 710
HinfI GANTC 1 cut(s) 545
HpaII CCGG 1 cut(s) 407
HphI GGTGA 3 cut(s) 164, 267, 593
Hpy166II GTNNAC 1 cut(s) 656
Hpy188I TCNGA 4 cut(s) 124, 159, 427, 436
Hpy188III TCNNGA 4 cut(s) 68, 299, 353, 398
Hpy8I GTNNAC 1 cut(s) 656
HpyAV CCTTC 2 cut(s) 402, 485
HpyCH4III ACNGT 3 cut(s) 226, 598, 649
HpyCH4IV ACGT 1 cut(s) 478
HpyCH4V TGCA 5 cut(s) 286, 364, 513, 656, 710
HpyF3I CTNAG 1 cut(s) 435
HpySE526I ACGT 1 cut(s) 478
Hsp92II CATG 6 cut(s) 80, 140, 290, 368, 377, 710
KroI GCCGGC 1 cut(s) 406
KroNI GCCGGC 1 cut(s) 408
Ksp22I TGATCA 1 cut(s) 124
Kzo9I GATC 3 cut(s) 124, 154, 589
LguI GCTCTTC 1 cut(s) 393
LmnI GCTCC 2 cut(s) 268, 520
Lsp1109I GCAGC 1 cut(s) 395
LweI GCATC 1 cut(s) 419
MaeI CTAG 5 cut(s) 54, 81, 114, 191, 659
MaeII ACGT 1 cut(s) 478
MaeIII GTNAC 2 cut(s) 49, 398
MalI GATC 3 cut(s) 126, 156, 591
MbiI CCGCTC 1 cut(s) 263
MboI GATC 3 cut(s) 124, 154, 589
MboII GAAGA 7 cut(s) 138, 192, 221, 287, 324, 380, 405
MhlI GDGCHC 1 cut(s) 658
MluCI AATT 2 cut(s) 674, 721
MlyI GAGTC 1 cut(s) 539
MmeI TCCRAC 1 cut(s) 245
Mph1103I ATGCAT 1 cut(s) 712
MroNI GCCGGC 1 cut(s) 406
MseI TTAA 2 cut(s) 573, 724
MspI CCGG 1 cut(s) 407
MspR9I CCNGG 1 cut(s) 96
MvaI CCWGG 1 cut(s) 96
NaeI GCCGGC 1 cut(s) 408
NdeII GATC 3 cut(s) 124, 154, 589
NgoMIV GCCGGC 1 cut(s) 406
NlaIII CATG 6 cut(s) 80, 140, 290, 368, 377, 710
NlaIV GGNNCC 1 cut(s) 219
NmuCI GTSAC 2 cut(s) 49, 398
NsiI ATGCAT 1 cut(s) 712
NspI RCATGY 3 cut(s) 140, 290, 710
PaeI GCATGC 2 cut(s) 140, 290
PciSI GCTCTTC 1 cut(s) 393
PdiI GCCGGC 1 cut(s) 408
PkrI GCNGC 1 cut(s) 385
PleI GAGTC 1 cut(s) 539
PpsI GAGTC 1 cut(s) 539
Psp6I CCWGG 1 cut(s) 94
PspFI CCCAGC 1 cut(s) 140
PspGI CCWGG 1 cut(s) 94
PspN4I GGNNCC 1 cut(s) 219
PstNI CAGNNNCTG 1 cut(s) 458
SapI GCTCTTC 1 cut(s) 393
SaqAI TTAA 2 cut(s) 573, 724
SatI GCNGC 1 cut(s) 384
Sau3AI GATC 3 cut(s) 124, 154, 589
SchI GAGTC 1 cut(s) 539
ScrFI CCNGG 1 cut(s) 96
SduI GDGCHC 1 cut(s) 658
SetI ASST 6 cut(s) 46, 259, 283, 388, 405, 481
SfaNI GCATC 1 cut(s) 419
SpeI ACTAGT 3 cut(s) 53, 190, 658
SphI GCATGC 2 cut(s) 140, 290
Sse9I AATT 2 cut(s) 674, 721
SsiI CCGC 4 cut(s) 110, 261, 325, 693
SspMI CTAG 5 cut(s) 54, 81, 114, 191, 659
StyD4I CCNGG 1 cut(s) 94
StyI CCWWGG 1 cut(s) 625
TaaI ACNGT 3 cut(s) 226, 598, 649
TaiI ACGT 1 cut(s) 481
TaqI TCGA 1 cut(s) 300
TaqII GACCGA 1 cut(s) 17
TasI AATT 2 cut(s) 674, 721
Tru1I TTAA 2 cut(s) 573, 724
Tru9I TTAA 2 cut(s) 573, 724
TscAI CASTG 2 cut(s) 463, 603
TseFI GTSAC 2 cut(s) 49, 398
TseI GCWGC 1 cut(s) 383
Tsp45I GTSAC 2 cut(s) 49, 398
TspDTI ATGAA 3 cut(s) 8, 546, 647
TspRI CASTG 2 cut(s) 463, 603
VneI GTGCAC 1 cut(s) 654
XceI RCATGY 3 cut(s) 140, 290, 710
XspI CTAG 5 cut(s) 54, 81, 114, 191, 659
Zsp2I ATGCAT 1 cut(s) 712
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.