FvH4_2g03270

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
2548278 .. 2551857
3580 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g03270.t1

Sequence Viewer

Length: 252 bp
ATGCACAAATTTTTGACTTGGAAAGATCGGTTACAAATAGCAATAGATGCTGCACAAGGACTGGAATATTTGCACTATGGTTGCAAGCCGCCCATAATCCACAGGGATGTCAAGTTGACAAATATCCTGCTGAATGAATATCTTCAAGCTAAACTATCAGATTTTGGCCTATCCAAGAGTTTTCCAACTAATGATGGCAGTCATGTATCAACTCTTGTTGTTGGCACTCCAGGGTACCTTGATCCTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

84

Amino Acids

9.34

Weight (kDa)

6.39

Isoelectric Point (pI)

33.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 5 - 67 1.6e-12 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 6 - 83 3.8e-15 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000083)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07560 AT1G51790 AT1G51790 AT1G51790 AT1G51800 AT1G51805 AT1G51805 AT1G51810 AT1G51820 AT1G51820 AT1G51830 AT1G51830 AT1G51840 AT1G51840 AT1G51840 AT1G51840 AT1G51840 AT1G51850 AT1G51850 AT1G51860 AT1G51860 AT1G51870 AT1G51870 AT1G51880 AT1G51880 AT1G51880 AT1G51890 AT1G51890 AT1G51890 AT1G51890 AT1G51890 AT1G51910 AT2G04300 AT2G04300 AT2G28960 AT2G28960 AT2G28970 AT2G28970 AT2G28990 AT2G28990 AT2G29000 AT3G21340 AT3G46350 AT5G59616 AT5G59650 AT5G59650 AT5G59660 AT5G59660 AT5G59660 AT5G59670 AT5G59670 AT5G59680
fragaria_vesca FvH4_2g03270 FvH4_3g21300 FvH4_6g32660 FvH4_6g32660 FvH4_6g32670 FvH4_6g32670 FvH4_6g32690 FvH4_6g32690 FvH4_6g32691 FvH4_6g32700 FvH4_6g32740 FvH4_6g32750 FvH4_6g33210 FvH4_6g33210 FvH4_7g24270 FvH4_7g24280 FvH4_7g24291 FvH4_7g24300
malus_domestica MD09G1198400.v1.1 MD09G1198600.v1.1 MD09G1199100.v1.1 MD09G1199200.v1.1 MD09G1199300.v1.1 MD09G1199500.v1.1 MD09G1199600.v1.1 MD17G1179300.v1.1 MD17G1180200.v1.1 MD17G1266000.v1.1
prunus_persica Prupe.1G438900_v2.0.a1 Prupe.1G439000_v2.0.a1 Prupe.1G439100_v2.0.a1 Prupe.3G019400_v2.0.a1 Prupe.3G021900_v2.0.a1 Prupe.3G054500_v2.0.a1 Prupe.3G054500_v2.0.a1 Prupe.3G055100_v2.0.a1 Prupe.3G055400_v2.0.a1 Prupe.3G055500_v2.0.a1 Prupe.3G055600_v2.0.a1 Prupe.3G055700_v2.0.a1 Prupe.3G055800_v2.0.a1 Prupe.3G055900_v2.0.a1 Prupe.3G055900_v2.0.a1 Prupe.3G056000_v2.0.a1 Prupe.3G056000_v2.0.a1 Prupe.3G056100_v2.0.a1 Prupe.3G209600_v2.0.a1 Prupe.3G209700_v2.0.a1 Prupe.6G291100_v2.0.a1 Prupe.7G208900_v2.0.a1 Prupe.8G038300_v2.0.a1
pyrus_communis pycom09g11570 pycom09g11580 pycom09g11610 pycom09g11630 pycom09g11640 pycom17g18840 pycom17g18910 pycom17g18930 pycom17g18940
rosa_chinensis RchiOBHm_Chr1g0317521 RchiOBHm_Chr1g0317541 RchiOBHm_Chr2g0123351 RchiOBHm_Chr2g0141181 RchiOBHm_Chr2g0141191 RchiOBHm_Chr2g0141211 RchiOBHm_Chr2g0141221 RchiOBHm_Chr2g0141261 RchiOBHm_Chr2g0141271 RchiOBHm_Chr2g0141311 RchiOBHm_Chr2g0141331 RchiOBHm_Chr2g0141371 RchiOBHm_Chr2g0141391 RchiOBHm_Chr2g0141401 RchiOBHm_Chr2g0141431 RchiOBHm_Chr2g0141481 RchiOBHm_Chr2g0141491 RchiOBHm_Chr2g0141591 RchiOBHm_Chr2g0141601 RchiOBHm_Chr2g0141611 RchiOBHm_Chr2g0141631 RchiOBHm_Chr2g0141641 RchiOBHm_Chr2g0141661 RchiOBHm_Chr2g0141681 RchiOBHm_Chr2g0141701 RchiOBHm_Chr2g0141781 RchiOBHm_Chr2g0141811 RchiOBHm_Chr2g0141821 RchiOBHm_Chr3g0479311 RchiOBHm_Chr3g0495751 RchiOBHm_Chr4g0404741 RchiOBHm_Chr4g0410341 RchiOBHm_Chr4g0418371 RchiOBHm_Chr4g0438651 RchiOBHm_Chr5g0036411 RchiOBHm_Chr5g0036491 RchiOBHm_Chr5g0042391 RchiOBHm_Chr6g0279871 RchiOBHm_Chr7g0192921 RchiOBHm_Chr7g0214901 RchiOBHm_Chr7g0234931
rosa_laevigata RLG00000003432 RLG00000008806 RLG00000013062 RLG00000019514 RLG00000019923 RLG00000019924 RLG00000019925 RLG00000019930 RLG00000019931 RLG00000019934 RLG00000019937 RLG00000019938 RLG00000033697
rosa_multiflora Rmu_co8002302.1_g000001 Rmu_sc0000147.1_g000031 Rmu_sc0000463.1_g000005 Rmu_sc0000712.1_g000003 Rmu_sc0001483.1_g000017 Rmu_sc0001554.1_g000002 Rmu_sc0001554.1_g000005 Rmu_sc0001554.1_g000008 Rmu_sc0001981.1_g000017 Rmu_sc0002040.1_g000056 Rmu_sc0002755.1_g000018 Rmu_sc0002804.1_g000016 Rmu_sc0002928.1_g000015 Rmu_sc0003040.1_g000008 Rmu_sc0003040.1_g000018 Rmu_sc0004512.1_g000001 Rmu_sc0004512.1_g000004 Rmu_sc0005507.1_g000001 Rmu_sc0005507.1_g000009 Rmu_sc0005507.1_g000033 Rmu_sc0005507.1_g000037 Rmu_sc0005507.1_g000043 Rmu_sc0005507.1_g000047 Rmu_sc0006318.1_g000004 Rmu_sc0006318.1_g000014 Rmu_sc0006318.1_g000021 Rmu_sc0006556.1_g000001 Rmu_sc0007208.1_g000002 Rmu_sc0007208.1_g000003 Rmu_sc0007208.1_g000006 Rmu_sc0007208.1_g000008
rosa_roxburghii Rroxscaffold_1G00044430 Rroxscaffold_2G00103420 Rroxscaffold_2G00103470 Rroxscaffold_2G00103490 Rroxscaffold_2G00103500 Rroxscaffold_2G00103520 Rroxscaffold_2G00103530 Rroxscaffold_2G00103540 Rroxscaffold_2G00103550 Rroxscaffold_2G00103570 Rroxscaffold_2G00103770 Rroxscaffold_2G00103780 Rroxscaffold_2G00103800 Rroxscaffold_2G00103820 Rroxscaffold_2G00103860 Rroxscaffold_2G00103890 Rroxscaffold_2G00103930 Rroxscaffold_2G00103940 Rroxscaffold_2G00104010 Rroxscaffold_2G00104030 Rroxscaffold_2G00104050 Rroxscaffold_2G00104060 Rroxscaffold_2G00104070 Rroxscaffold_2G00104090 Rroxscaffold_2G00104100 Rroxscaffold_2G00104120 Rroxscaffold_2G00104130 Rroxscaffold_4G00331710
rosa_rugosa Rorug02G0367500 Rorug02G0367500 Rorug02G0367600 Rorug02G0367800 Rorug02G0367800 Rorug02G0367900 Rorug02G0368100 Rorug02G0368100 Rorug02G0368100 Rorug02G0368200 Rorug02G0368700 Rorug02G0368900 Rorug05G0155600 Rorug05G0155700 Rorug05G0155800 Rorug05G0156700 Rorug05G0157300
rosa_samantha Rh1AG028000 Rh2AG418700 Rh2AG418900 Rh2AG419000 Rh2AG419100 Rh2AG419400 Rh2AG419600 Rh2AG419800 Rh2AG420400 Rh2AG421000 Rh2BG428500 Rh2BG428600 Rh2BG428800 Rh2BG428900 Rh2BG429300 Rh2BG429400 Rh2BG429700 Rh2BG429900 Rh2BG430000 Rh2BG430700 Rh2CG405100 Rh2CG405200 Rh2CG405300 Rh2CG405500 Rh2CG405600 Rh2CG405700 Rh2CG406000 Rh2CG406100 Rh2CG406300 Rh2CG406600 Rh2CG406700 Rh2CG407500 Rh2CG408100 Rh2DG438500 Rh3DG123900 Rh3DG124000 Rh5BG249700 Rh5BG482500 Rh5CG281500 Rh5CG507300 Rh7DG133300
rosa_wichuraiana Rw0G019720 Rw0G019730 Rw0G019750 Rw0G023010 Rw2G034340 Rw2G034350 Rw2G034370 Rw2G034380 Rw2G034400 Rw2G034430 Rw2G034470 Rw2G034480 Rw2G034510 Rw5G022890 Rw5G026410 Rw5G032710 Rw5G042850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 234
AccB1I GGYRCC 1 cut(s) 234
AciI CCGC 1 cut(s) 89
AclWI GGATC 1 cut(s) 236
AcsI RAATTY 1 cut(s) 8
AfaI GTAC 1 cut(s) 236
AgsI TTSAA 1 cut(s) 146
AjnI CCWGG 1 cut(s) 229
AluBI AGCT 1 cut(s) 149
AluI AGCT 1 cut(s) 149
AlwI GGATC 1 cut(s) 236
AoxI GGCC 1 cut(s) 166
ApeKI GCWGC 1 cut(s) 50
ApoI RAATTY 1 cut(s) 8
Asp700I GAANNNNTTC 1 cut(s) 141
Asp718I GGTACC 1 cut(s) 234
BanI GGYRCC 1 cut(s) 234
BbvI GCAGC 1 cut(s) 37
BccI CCATC 1 cut(s) 188
BciT130I CCWGG 1 cut(s) 231
BisI GCNGC 2 cut(s) 51, 89
BlsI GCNGC 2 cut(s) 52, 90
Bme1390I CCNGG 1 cut(s) 231
BmiI GGNNCC 1 cut(s) 236
BmrFI CCNGG 1 cut(s) 231
BmsI GCATC 1 cut(s) 37
BpmI CTGGAG 1 cut(s) 213
BsaJI CCNNGG 1 cut(s) 230
Bse1I ACTGG 1 cut(s) 66
BseBI CCWGG 1 cut(s) 231
BseDI CCNNGG 1 cut(s) 230
BseGI GGATG 1 cut(s) 112
BseMII CTCAG 1 cut(s) 237
BseNI ACTGG 1 cut(s) 66
BseXI GCAGC 1 cut(s) 37
BsgI GTGCAG 1 cut(s) 36
BshFI GGCC 1 cut(s) 168
BshNI GGYRCC 1 cut(s) 234
BsnI GGCC 1 cut(s) 168
Bsp143I GATC 2 cut(s) 25, 241
BspACI CCGC 1 cut(s) 89
BspANI GGCC 1 cut(s) 168
BspCNI CTCAG 1 cut(s) 238
BspLI GGNNCC 1 cut(s) 236
BspPI GGATC 1 cut(s) 236
BspT107I GGYRCC 1 cut(s) 234
BsrI ACTGG 1 cut(s) 66
BssECI CCNNGG 1 cut(s) 230
BssMI GATC 2 cut(s) 25, 241
Bst2UI CCWGG 1 cut(s) 231
BstAPI GCANNNNNTGC 1 cut(s) 47
BstC8I GCNNGC 1 cut(s) 86
BstDEI CTNAG 1 cut(s) 246
BstF5I GGATG 1 cut(s) 112
BstKTI GATC 2 cut(s) 28, 244
BstMBI GATC 2 cut(s) 25, 241
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstNI CCWGG 1 cut(s) 231
BstSCI CCNGG 1 cut(s) 229
BstV1I GCAGC 1 cut(s) 37
BsuRI GGCC 1 cut(s) 168
BtsCI GGATG 1 cut(s) 112
Cac8I GCNNGC 1 cut(s) 86
Csp6I GTAC 1 cut(s) 235
CviAII CATG 1 cut(s) 203
CviJI RGCY 3 cut(s) 88, 149, 168
CviKI_1 RGCY 3 cut(s) 88, 149, 168
CviQI GTAC 1 cut(s) 235
DdeI CTNAG 1 cut(s) 246
DpnI GATC 2 cut(s) 27, 243
DpnII GATC 2 cut(s) 25, 241
EcoRII CCWGG 1 cut(s) 229
FaeI CATG 1 cut(s) 206
FaiI YATR 3 cut(s) 78, 95, 204
FatI CATG 1 cut(s) 202
Fnu4HI GCNGC 2 cut(s) 51, 89
FokI GGATG 1 cut(s) 119
Fsp4HI GCNGC 2 cut(s) 51, 89
GluI GCNGC 2 cut(s) 51, 89
GsuI CTGGAG 1 cut(s) 213
HaeIII GGCC 1 cut(s) 168
Hin1II CATG 1 cut(s) 206
HincII GTYRAC 1 cut(s) 117
HindII GTYRAC 1 cut(s) 117
Hpy166II GTNNAC 1 cut(s) 117
Hpy188I TCNGA 1 cut(s) 160
Hpy188III TCNNGA 1 cut(s) 245
Hpy8I GTNNAC 1 cut(s) 117
HpyCH4V TGCA 4 cut(s) 4, 53, 73, 84
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
HpyF3I CTNAG 1 cut(s) 246
Hsp92II CATG 1 cut(s) 206
KpnI GGTACC 1 cut(s) 238
Kzo9I GATC 2 cut(s) 25, 241
LpnPI CCDG 5 cut(s) 47, 88, 140, 216, 243
Lsp1109I GCAGC 1 cut(s) 37
LweI GCATC 1 cut(s) 37
MaeIII GTNAC 1 cut(s) 30
MalI GATC 2 cut(s) 27, 243
MboI GATC 2 cut(s) 25, 241
MboII GAAGA 1 cut(s) 134
MluCI AATT 1 cut(s) 8
MmeI TCCRAC 1 cut(s) 209
MroXI GAANNNNTTC 1 cut(s) 141
MslI CAYNNNNRTG 1 cut(s) 105
MspR9I CCNGG 1 cut(s) 231
MvaI CCWGG 1 cut(s) 231
MwoI GCNNNNNNNGC 1 cut(s) 47
NdeII GATC 2 cut(s) 25, 241
NlaIII CATG 1 cut(s) 206
NlaIV GGNNCC 1 cut(s) 236
PdmI GAANNNNTTC 1 cut(s) 141
PkrI GCNGC 2 cut(s) 52, 90
Psp6I CCWGG 1 cut(s) 229
PspGI CCWGG 1 cut(s) 229
PspN4I GGNNCC 1 cut(s) 236
RsaI GTAC 1 cut(s) 236
RsaNI GTAC 1 cut(s) 235
RseI CAYNNNNRTG 1 cut(s) 105
SatI GCNGC 2 cut(s) 51, 89
Sau3AI GATC 2 cut(s) 25, 241
ScrFI CCNGG 1 cut(s) 231
SetI ASST 2 cut(s) 151, 240
SfaNI GCATC 1 cut(s) 37
SmiMI CAYNNNNRTG 1 cut(s) 105
Sse9I AATT 1 cut(s) 8
SsiI CCGC 1 cut(s) 89
SspI AATATT 1 cut(s) 68
StyD4I CCNGG 1 cut(s) 229
TasI AATT 1 cut(s) 8
TauI GCSGC 1 cut(s) 91
TseI GCWGC 1 cut(s) 50
TspDTI ATGAA 1 cut(s) 150
XapI RAATTY 1 cut(s) 8
XmnI GAANNNNTTC 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.