Rroxscaffold_4G00331710

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
65682407 .. 65684232
1826 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00331710.1

Sequence Viewer

Length: 651 bp
ATGTTCTGCATAAAAGTTGTAAAGGACGTTAAACCGAGTGCGTGGATATATGGACTGGAGTATCTGCACTATGGTTCCAGACCTCCTATAATCCACAGAGATGTGAAATCTACAAATATCTTGTTGAATGAAAACTTTCAAGCCAAACTATCTGATTTTGGCCTGTCTAGAATTTTTCCTGCTGAGGATGGGACTCGTCAATGGACACGTGTCGCTGGAACTCCTGGATACCTTGACCCTGAGTACTACCTATCAAACATGTTAAATGAAAAAAGTGATGTTTATAGCTTTGGGATTGTGCTGTTGGAGATAATCACAAGTAGACCTGTGATATCAAAGACACATGAGAAAATTCACATTGCTCAATGGGTTAATTTCATGGTTGAGAAAGGGGACATTACAAGTATCATAGATTCAAGGCTAAAAGGAAACTTTGATAGTAATTCTGTGTGGAAGGCTGTTGAAATAGCTATATTTTGTGTATCTTCAAGTTCCAACAACAGGCCAACCATGAGTCAGGTAGTGACAGAGCTGAAGGACTGCTTGGCTGCAGAATTGGCTCGAAAGGAGAGCTATGCAACAGAATCGAAAGATTCAGTTGAGATGATATCACTGAAATTCACCACTGAGATGAGACCCCTGCCTAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

216

Amino Acids

24.56

Weight (kDa)

6.91

Isoelectric Point (pI)

37.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 17 - 176 1.2e-25 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 18 - 178 1.3e-21 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000083)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07560 AT1G51790 AT1G51790 AT1G51790 AT1G51800 AT1G51805 AT1G51805 AT1G51810 AT1G51820 AT1G51820 AT1G51830 AT1G51830 AT1G51840 AT1G51840 AT1G51840 AT1G51840 AT1G51840 AT1G51850 AT1G51850 AT1G51860 AT1G51860 AT1G51870 AT1G51870 AT1G51880 AT1G51880 AT1G51880 AT1G51890 AT1G51890 AT1G51890 AT1G51890 AT1G51890 AT1G51910 AT2G04300 AT2G04300 AT2G28960 AT2G28960 AT2G28970 AT2G28970 AT2G28990 AT2G28990 AT2G29000 AT3G21340 AT3G46350 AT5G59616 AT5G59650 AT5G59650 AT5G59660 AT5G59660 AT5G59660 AT5G59670 AT5G59670 AT5G59680
fragaria_vesca FvH4_2g03270 FvH4_3g21300 FvH4_6g32660 FvH4_6g32660 FvH4_6g32670 FvH4_6g32670 FvH4_6g32690 FvH4_6g32690 FvH4_6g32691 FvH4_6g32700 FvH4_6g32740 FvH4_6g32750 FvH4_6g33210 FvH4_6g33210 FvH4_7g24270 FvH4_7g24280 FvH4_7g24291 FvH4_7g24300
malus_domestica MD09G1198400.v1.1 MD09G1198600.v1.1 MD09G1199100.v1.1 MD09G1199200.v1.1 MD09G1199300.v1.1 MD09G1199500.v1.1 MD09G1199600.v1.1 MD17G1179300.v1.1 MD17G1180200.v1.1 MD17G1266000.v1.1
prunus_persica Prupe.1G438900_v2.0.a1 Prupe.1G439000_v2.0.a1 Prupe.1G439100_v2.0.a1 Prupe.3G019400_v2.0.a1 Prupe.3G021900_v2.0.a1 Prupe.3G054500_v2.0.a1 Prupe.3G054500_v2.0.a1 Prupe.3G055100_v2.0.a1 Prupe.3G055400_v2.0.a1 Prupe.3G055500_v2.0.a1 Prupe.3G055600_v2.0.a1 Prupe.3G055700_v2.0.a1 Prupe.3G055800_v2.0.a1 Prupe.3G055900_v2.0.a1 Prupe.3G055900_v2.0.a1 Prupe.3G056000_v2.0.a1 Prupe.3G056000_v2.0.a1 Prupe.3G056100_v2.0.a1 Prupe.3G209600_v2.0.a1 Prupe.3G209700_v2.0.a1 Prupe.6G291100_v2.0.a1 Prupe.7G208900_v2.0.a1 Prupe.8G038300_v2.0.a1
pyrus_communis pycom09g11570 pycom09g11580 pycom09g11610 pycom09g11630 pycom09g11640 pycom17g18840 pycom17g18910 pycom17g18930 pycom17g18940
rosa_chinensis RchiOBHm_Chr1g0317521 RchiOBHm_Chr1g0317541 RchiOBHm_Chr2g0123351 RchiOBHm_Chr2g0141181 RchiOBHm_Chr2g0141191 RchiOBHm_Chr2g0141211 RchiOBHm_Chr2g0141221 RchiOBHm_Chr2g0141261 RchiOBHm_Chr2g0141271 RchiOBHm_Chr2g0141311 RchiOBHm_Chr2g0141331 RchiOBHm_Chr2g0141371 RchiOBHm_Chr2g0141391 RchiOBHm_Chr2g0141401 RchiOBHm_Chr2g0141431 RchiOBHm_Chr2g0141481 RchiOBHm_Chr2g0141491 RchiOBHm_Chr2g0141591 RchiOBHm_Chr2g0141601 RchiOBHm_Chr2g0141611 RchiOBHm_Chr2g0141631 RchiOBHm_Chr2g0141641 RchiOBHm_Chr2g0141661 RchiOBHm_Chr2g0141681 RchiOBHm_Chr2g0141701 RchiOBHm_Chr2g0141781 RchiOBHm_Chr2g0141811 RchiOBHm_Chr2g0141821 RchiOBHm_Chr3g0479311 RchiOBHm_Chr3g0495751 RchiOBHm_Chr4g0404741 RchiOBHm_Chr4g0410341 RchiOBHm_Chr4g0418371 RchiOBHm_Chr4g0438651 RchiOBHm_Chr5g0036411 RchiOBHm_Chr5g0036491 RchiOBHm_Chr5g0042391 RchiOBHm_Chr6g0279871 RchiOBHm_Chr7g0192921 RchiOBHm_Chr7g0214901 RchiOBHm_Chr7g0234931
rosa_laevigata RLG00000003432 RLG00000008806 RLG00000013062 RLG00000019514 RLG00000019923 RLG00000019924 RLG00000019925 RLG00000019930 RLG00000019931 RLG00000019934 RLG00000019937 RLG00000019938 RLG00000033697
rosa_multiflora Rmu_co8002302.1_g000001 Rmu_sc0000147.1_g000031 Rmu_sc0000463.1_g000005 Rmu_sc0000712.1_g000003 Rmu_sc0001483.1_g000017 Rmu_sc0001554.1_g000002 Rmu_sc0001554.1_g000005 Rmu_sc0001554.1_g000008 Rmu_sc0001981.1_g000017 Rmu_sc0002040.1_g000056 Rmu_sc0002755.1_g000018 Rmu_sc0002804.1_g000016 Rmu_sc0002928.1_g000015 Rmu_sc0003040.1_g000008 Rmu_sc0003040.1_g000018 Rmu_sc0004512.1_g000001 Rmu_sc0004512.1_g000004 Rmu_sc0005507.1_g000001 Rmu_sc0005507.1_g000009 Rmu_sc0005507.1_g000033 Rmu_sc0005507.1_g000037 Rmu_sc0005507.1_g000043 Rmu_sc0005507.1_g000047 Rmu_sc0006318.1_g000004 Rmu_sc0006318.1_g000014 Rmu_sc0006318.1_g000021 Rmu_sc0006556.1_g000001 Rmu_sc0007208.1_g000002 Rmu_sc0007208.1_g000003 Rmu_sc0007208.1_g000006 Rmu_sc0007208.1_g000008
rosa_roxburghii Rroxscaffold_1G00044430 Rroxscaffold_2G00103420 Rroxscaffold_2G00103470 Rroxscaffold_2G00103490 Rroxscaffold_2G00103500 Rroxscaffold_2G00103520 Rroxscaffold_2G00103530 Rroxscaffold_2G00103540 Rroxscaffold_2G00103550 Rroxscaffold_2G00103570 Rroxscaffold_2G00103770 Rroxscaffold_2G00103780 Rroxscaffold_2G00103800 Rroxscaffold_2G00103820 Rroxscaffold_2G00103860 Rroxscaffold_2G00103890 Rroxscaffold_2G00103930 Rroxscaffold_2G00103940 Rroxscaffold_2G00104010 Rroxscaffold_2G00104030 Rroxscaffold_2G00104050 Rroxscaffold_2G00104060 Rroxscaffold_2G00104070 Rroxscaffold_2G00104090 Rroxscaffold_2G00104100 Rroxscaffold_2G00104120 Rroxscaffold_2G00104130 Rroxscaffold_4G00331710
rosa_rugosa Rorug02G0367500 Rorug02G0367500 Rorug02G0367600 Rorug02G0367800 Rorug02G0367800 Rorug02G0367900 Rorug02G0368100 Rorug02G0368100 Rorug02G0368100 Rorug02G0368200 Rorug02G0368700 Rorug02G0368900 Rorug05G0155600 Rorug05G0155700 Rorug05G0155800 Rorug05G0156700 Rorug05G0157300
rosa_samantha Rh1AG028000 Rh2AG418700 Rh2AG418900 Rh2AG419000 Rh2AG419100 Rh2AG419400 Rh2AG419600 Rh2AG419800 Rh2AG420400 Rh2AG421000 Rh2BG428500 Rh2BG428600 Rh2BG428800 Rh2BG428900 Rh2BG429300 Rh2BG429400 Rh2BG429700 Rh2BG429900 Rh2BG430000 Rh2BG430700 Rh2CG405100 Rh2CG405200 Rh2CG405300 Rh2CG405500 Rh2CG405600 Rh2CG405700 Rh2CG406000 Rh2CG406100 Rh2CG406300 Rh2CG406600 Rh2CG406700 Rh2CG407500 Rh2CG408100 Rh2DG438500 Rh3DG123900 Rh3DG124000 Rh5BG249700 Rh5BG482500 Rh5CG281500 Rh5CG507300 Rh7DG133300
rosa_wichuraiana Rw0G019720 Rw0G019730 Rw0G019750 Rw0G023010 Rw2G034340 Rw2G034350 Rw2G034370 Rw2G034380 Rw2G034400 Rw2G034430 Rw2G034470 Rw2G034480 Rw2G034510 Rw5G022890 Rw5G026410 Rw5G032710 Rw5G042850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 322
AcsI RAATTY 3 cut(s) 171, 351, 617
AcuI CTGAAG 1 cut(s) 554
AcvI CACGTG 1 cut(s) 209
AfaI GTAC 1 cut(s) 245
AfiI CCNNNNNNNGG 2 cut(s) 501, 645
AflIII ACRYGT 3 cut(s) 206, 208, 258
AgsI TTSAA 5 cut(s) 127, 140, 417, 464, 489
AjnI CCWGG 1 cut(s) 223
AjuI GAANNNNNNNTTGG 2 cut(s) 527, 559
AluBI AGCT 4 cut(s) 288, 470, 532, 573
AluI AGCT 4 cut(s) 288, 470, 532, 573
Alw26I GTCTC 1 cut(s) 628
AoxI GGCC 2 cut(s) 160, 503
ApeKI GCWGC 1 cut(s) 548
ApoI RAATTY 3 cut(s) 171, 351, 617
Asp700I GAANNNNTTC 1 cut(s) 135
AspA2I CCTAGG 1 cut(s) 644
AsuHPI GGTGA 1 cut(s) 613
AvrII CCTAGG 1 cut(s) 644
BaeI ACNNNNGTAYC 2 cut(s) 44, 77
BbrPI CACGTG 1 cut(s) 209
BbvCI CCTCAGC 1 cut(s) 183
BbvI GCAGC 1 cut(s) 535
BccI CCATC 1 cut(s) 182
BcgI CGANNNNNNTGC 2 cut(s) 567, 601
BciT130I CCWGG 1 cut(s) 225
BciVI GTATCC 1 cut(s) 221
BcoDI GTCTC 1 cut(s) 628
BfaI CTAG 2 cut(s) 168, 645
BfmI CTRYAG 1 cut(s) 549
BfuI GTATCC 1 cut(s) 221
BisI GCNGC 1 cut(s) 549
BlnI CCTAGG 1 cut(s) 644
BlsI GCNGC 1 cut(s) 550
BmcAI AGTACT 1 cut(s) 245
Bme1390I CCNGG 1 cut(s) 225
BmiI GGNNCC 1 cut(s) 76
BmrFI CCNGG 1 cut(s) 225
BoxI GACNNNNGTC 1 cut(s) 209
BpmI CTGGAG 1 cut(s) 77
Bpu10I CCTNAGC 1 cut(s) 183
BsaAI YACGTR 1 cut(s) 209
BsaI GGTCTC 1 cut(s) 628
BsaJI CCNNGG 1 cut(s) 644
Bsc4I CCNNNNNNNGG 2 cut(s) 501, 645
Bse1I ACTGG 1 cut(s) 60
Bse3DI GCAATG 1 cut(s) 357
BseBI CCWGG 1 cut(s) 225
BseDI CCNNGG 1 cut(s) 644
BseGI GGATG 1 cut(s) 193
BseLI CCNNNNNNNGG 2 cut(s) 501, 645
BseMI GCAATG 1 cut(s) 357
BseMII CTCAG 3 cut(s) 174, 231, 618
BseNI ACTGG 1 cut(s) 60
BseXI GCAGC 1 cut(s) 535
BsgI GTGCAG 1 cut(s) 50
BshFI GGCC 2 cut(s) 162, 505
BslFI GGGAC 2 cut(s) 205, 407
BslI CCNNNNNNNGG 2 cut(s) 501, 645
BsmAI GTCTC 1 cut(s) 628
BsmFI GGGAC 2 cut(s) 205, 407
BsnI GGCC 2 cut(s) 162, 505
Bso31I GGTCTC 1 cut(s) 628
BspANI GGCC 2 cut(s) 162, 505
BspCNI CTCAG 3 cut(s) 175, 232, 619
BspLI GGNNCC 1 cut(s) 76
BspMAI CTGCAG 1 cut(s) 553
BspTNI GGTCTC 1 cut(s) 628
BsrDI GCAATG 1 cut(s) 357
BsrI ACTGG 1 cut(s) 60
BssECI CCNNGG 1 cut(s) 644
BssT1I CCWWGG 1 cut(s) 644
Bst2UI CCWGG 1 cut(s) 225
BstBAI YACGTR 1 cut(s) 209
BstDEI CTNAG 3 cut(s) 183, 240, 627
BstF5I GGATG 1 cut(s) 193
BstMAI GTCTC 1 cut(s) 628
BstMWI GCNNNNNNNGC 1 cut(s) 557
BstNI CCWGG 1 cut(s) 225
BstNSI RCATGY 1 cut(s) 262
BstPAI GACNNNNGTC 1 cut(s) 209
BstSCI CCNGG 1 cut(s) 223
BstSFI CTRYAG 1 cut(s) 549
BstV1I GCAGC 1 cut(s) 535
BsuI GTATCC 1 cut(s) 221
BsuRI GGCC 2 cut(s) 162, 505
BtsCI GGATG 1 cut(s) 193
BtsIMutI CAGTG 2 cut(s) 611, 624
Csp6I GTAC 1 cut(s) 244
CviAII CATG 4 cut(s) 259, 344, 379, 511
CviQI GTAC 1 cut(s) 244
DdeI CTNAG 3 cut(s) 183, 240, 627
Eco130I CCWWGG 1 cut(s) 644
Eco31I GGTCTC 1 cut(s) 628
Eco32I GATATC 2 cut(s) 333, 609
Eco57I CTGAAG 1 cut(s) 554
Eco72I CACGTG 1 cut(s) 209
EcoRII CCWGG 1 cut(s) 223
EcoRV GATATC 2 cut(s) 333, 609
EcoT14I CCWWGG 1 cut(s) 644
ErhI CCWWGG 1 cut(s) 644
FaeI CATG 4 cut(s) 262, 347, 382, 514
FalI AAGNNNNNCTT 2 cut(s) 527, 559
FaqI GGGAC 2 cut(s) 205, 407
FatI CATG 4 cut(s) 258, 343, 378, 510
FblI GTMKAC 1 cut(s) 322
Fnu4HI GCNGC 1 cut(s) 549
FokI GGATG 1 cut(s) 200
Fsp4HI GCNGC 1 cut(s) 549
FspBI CTAG 2 cut(s) 168, 645
GluI GCNGC 1 cut(s) 549
GsuI CTGGAG 1 cut(s) 77
HaeIII GGCC 2 cut(s) 162, 505
Hin1II CATG 4 cut(s) 262, 347, 382, 514
HinfI GANTC 5 cut(s) 193, 413, 514, 584, 593
HphI GGTGA 1 cut(s) 613
Hpy166II GTNNAC 1 cut(s) 323
Hpy188I TCNGA 1 cut(s) 154
Hpy188III TCNNGA 2 cut(s) 78, 168
Hpy8I GTNNAC 1 cut(s) 323
HpyAV CCTTC 2 cut(s) 448, 529
HpyCH4IV ACGT 2 cut(s) 27, 208
HpyCH4V TGCA 4 cut(s) 9, 67, 551, 578
HpyF10VI GCNNNNNNNGC 1 cut(s) 557
HpyF3I CTNAG 3 cut(s) 183, 240, 627
HpySE526I ACGT 2 cut(s) 27, 208
Hsp92II CATG 4 cut(s) 262, 347, 382, 514
Lsp1109I GCAGC 1 cut(s) 535
MaeI CTAG 2 cut(s) 168, 645
MaeII ACGT 2 cut(s) 27, 208
MaeIII GTNAC 1 cut(s) 523
MboII GAAGA 1 cut(s) 477
MluCI AATT 6 cut(s) 171, 351, 373, 442, 554, 617
MlyI GAGTC 2 cut(s) 187, 523
MmeI TCCRAC 2 cut(s) 285, 519
MnlI CCTC 2 cut(s) 93, 178
MroXI GAANNNNTTC 1 cut(s) 135
MseI TTAA 3 cut(s) 30, 263, 372
MslI CAYNNNNRTG 2 cut(s) 99, 629
MspR9I CCNGG 1 cut(s) 225
MvaI CCWGG 1 cut(s) 225
MwoI GCNNNNNNNGC 1 cut(s) 557
NlaIII CATG 4 cut(s) 262, 347, 382, 514
NlaIV GGNNCC 1 cut(s) 76
NmuCI GTSAC 1 cut(s) 523
NspI RCATGY 1 cut(s) 262
PciI ACATGT 1 cut(s) 258
PdmI GAANNNNTTC 1 cut(s) 135
PfeI GAWTC 3 cut(s) 413, 584, 593
PfoI TCCNGGA 1 cut(s) 223
PkrI GCNGC 1 cut(s) 550
PleI GAGTC 2 cut(s) 187, 522
PmaCI CACGTG 1 cut(s) 209
PmlI CACGTG 1 cut(s) 209
PpsI GAGTC 2 cut(s) 187, 522
Ppu21I YACGTR 1 cut(s) 209
PscI ACATGT 1 cut(s) 258
PshAI GACNNNNGTC 1 cut(s) 209
Psp6I CCWGG 1 cut(s) 223
PspCI CACGTG 1 cut(s) 209
PspGI CCWGG 1 cut(s) 223
PspN4I GGNNCC 1 cut(s) 76
PstI CTGCAG 1 cut(s) 553
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
RseI CAYNNNNRTG 2 cut(s) 99, 629
SaqAI TTAA 3 cut(s) 30, 263, 372
SatI GCNGC 1 cut(s) 549
ScaI AGTACT 1 cut(s) 245
SchI GAGTC 2 cut(s) 187, 523
ScrFI CCNGG 1 cut(s) 225
SfcI CTRYAG 1 cut(s) 549
SmiMI CAYNNNNRTG 2 cut(s) 99, 629
Sse9I AATT 6 cut(s) 171, 351, 373, 442, 554, 617
SspMI CTAG 2 cut(s) 168, 645
StyD4I CCNGG 1 cut(s) 223
StyI CCWWGG 1 cut(s) 644
TaiI ACGT 2 cut(s) 30, 211
TaqI TCGA 2 cut(s) 562, 587
TasI AATT 6 cut(s) 171, 351, 373, 442, 554, 617
TatI WGTACW 1 cut(s) 243
TfiI GAWTC 3 cut(s) 413, 584, 593
Tru1I TTAA 3 cut(s) 30, 263, 372
Tru9I TTAA 3 cut(s) 30, 263, 372
TscAI CASTG 2 cut(s) 618, 631
TseFI GTSAC 1 cut(s) 523
TseI GCWGC 1 cut(s) 548
Tsp45I GTSAC 1 cut(s) 523
TspDTI ATGAA 3 cut(s) 144, 282, 367
TspRI CASTG 2 cut(s) 618, 631
XapI RAATTY 3 cut(s) 171, 351, 617
XbaI TCTAGA 1 cut(s) 167
XceI RCATGY 1 cut(s) 262
XmaJI CCTAGG 1 cut(s) 644
XmiI GTMKAC 1 cut(s) 322
XmnI GAANNNNTTC 1 cut(s) 135
XspI CTAG 2 cut(s) 168, 645
ZrmI AGTACT 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.