Rh5CG507300

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
70596079 .. 70596996
918 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG507300.1

Sequence Viewer

Length: 444 bp
ATGGAGTACTTCAGAGTCATAGATTTCTTGCTTTTATATATGTTCATTTTTAGAGGCATCACCATGCTTTTAACTGACTGCTTTAACTTAGCTAGCTGTCAACATGATTCACTCATAAGTTGCTTGAAACTTGCTATTAGGGACTTGTCCTCGAGCGGCTTGACAGGAGAGATAACTTCATATATATCCAATCTTGACATGTTACAATCTTTGGATTTATCTAACAATAGCTTAACTGGATCAGTACCTGAGTTTCTGACTAAATTGCCAAACCTGAAAGTCCTTAACTTGGAAAAGAACAAGCTGAATGGTTCACTTCCAAGTATGCTTATCGAAAAATCGACAAGTGGATCACTATCGTTAAGAGTATTTCCTTCTGTTTTCAATAATAATCTTATATTCTTTGATGTGGAAAAGTATGAGAAGAAAAAGAAAACAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

147

Amino Acids

16.66

Weight (kDa)

8.43

Isoelectric Point (pI)

36.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 49 - 102 4.2e-07 Leucine rich repeat
LRR_4 PF12799 68 - 103 6.3e-08 Leucine Rich repeats (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000083)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07560 AT1G51790 AT1G51790 AT1G51790 AT1G51800 AT1G51805 AT1G51805 AT1G51810 AT1G51820 AT1G51820 AT1G51830 AT1G51830 AT1G51840 AT1G51840 AT1G51840 AT1G51840 AT1G51840 AT1G51850 AT1G51850 AT1G51860 AT1G51860 AT1G51870 AT1G51870 AT1G51880 AT1G51880 AT1G51880 AT1G51890 AT1G51890 AT1G51890 AT1G51890 AT1G51890 AT1G51910 AT2G04300 AT2G04300 AT2G28960 AT2G28960 AT2G28970 AT2G28970 AT2G28990 AT2G28990 AT2G29000 AT3G21340 AT3G46350 AT5G59616 AT5G59650 AT5G59650 AT5G59660 AT5G59660 AT5G59660 AT5G59670 AT5G59670 AT5G59680
fragaria_vesca FvH4_2g03270 FvH4_3g21300 FvH4_6g32660 FvH4_6g32660 FvH4_6g32670 FvH4_6g32670 FvH4_6g32690 FvH4_6g32690 FvH4_6g32691 FvH4_6g32700 FvH4_6g32740 FvH4_6g32750 FvH4_6g33210 FvH4_6g33210 FvH4_7g24270 FvH4_7g24280 FvH4_7g24291 FvH4_7g24300
malus_domestica MD09G1198400.v1.1 MD09G1198600.v1.1 MD09G1199100.v1.1 MD09G1199200.v1.1 MD09G1199300.v1.1 MD09G1199500.v1.1 MD09G1199600.v1.1 MD17G1179300.v1.1 MD17G1180200.v1.1 MD17G1266000.v1.1
prunus_persica Prupe.1G438900_v2.0.a1 Prupe.1G439000_v2.0.a1 Prupe.1G439100_v2.0.a1 Prupe.3G019400_v2.0.a1 Prupe.3G021900_v2.0.a1 Prupe.3G054500_v2.0.a1 Prupe.3G054500_v2.0.a1 Prupe.3G055100_v2.0.a1 Prupe.3G055400_v2.0.a1 Prupe.3G055500_v2.0.a1 Prupe.3G055600_v2.0.a1 Prupe.3G055700_v2.0.a1 Prupe.3G055800_v2.0.a1 Prupe.3G055900_v2.0.a1 Prupe.3G055900_v2.0.a1 Prupe.3G056000_v2.0.a1 Prupe.3G056000_v2.0.a1 Prupe.3G056100_v2.0.a1 Prupe.3G209600_v2.0.a1 Prupe.3G209700_v2.0.a1 Prupe.6G291100_v2.0.a1 Prupe.7G208900_v2.0.a1 Prupe.8G038300_v2.0.a1
pyrus_communis pycom09g11570 pycom09g11580 pycom09g11610 pycom09g11630 pycom09g11640 pycom17g18840 pycom17g18910 pycom17g18930 pycom17g18940
rosa_chinensis RchiOBHm_Chr1g0317521 RchiOBHm_Chr1g0317541 RchiOBHm_Chr2g0123351 RchiOBHm_Chr2g0141181 RchiOBHm_Chr2g0141191 RchiOBHm_Chr2g0141211 RchiOBHm_Chr2g0141221 RchiOBHm_Chr2g0141261 RchiOBHm_Chr2g0141271 RchiOBHm_Chr2g0141311 RchiOBHm_Chr2g0141331 RchiOBHm_Chr2g0141371 RchiOBHm_Chr2g0141391 RchiOBHm_Chr2g0141401 RchiOBHm_Chr2g0141431 RchiOBHm_Chr2g0141481 RchiOBHm_Chr2g0141491 RchiOBHm_Chr2g0141591 RchiOBHm_Chr2g0141601 RchiOBHm_Chr2g0141611 RchiOBHm_Chr2g0141631 RchiOBHm_Chr2g0141641 RchiOBHm_Chr2g0141661 RchiOBHm_Chr2g0141681 RchiOBHm_Chr2g0141701 RchiOBHm_Chr2g0141781 RchiOBHm_Chr2g0141811 RchiOBHm_Chr2g0141821 RchiOBHm_Chr3g0479311 RchiOBHm_Chr3g0495751 RchiOBHm_Chr4g0404741 RchiOBHm_Chr4g0410341 RchiOBHm_Chr4g0418371 RchiOBHm_Chr4g0438651 RchiOBHm_Chr5g0036411 RchiOBHm_Chr5g0036491 RchiOBHm_Chr5g0042391 RchiOBHm_Chr6g0279871 RchiOBHm_Chr7g0192921 RchiOBHm_Chr7g0214901 RchiOBHm_Chr7g0234931
rosa_laevigata RLG00000003432 RLG00000008806 RLG00000013062 RLG00000019514 RLG00000019923 RLG00000019924 RLG00000019925 RLG00000019930 RLG00000019931 RLG00000019934 RLG00000019937 RLG00000019938 RLG00000033697
rosa_multiflora Rmu_co8002302.1_g000001 Rmu_sc0000147.1_g000031 Rmu_sc0000463.1_g000005 Rmu_sc0000712.1_g000003 Rmu_sc0001483.1_g000017 Rmu_sc0001554.1_g000002 Rmu_sc0001554.1_g000005 Rmu_sc0001554.1_g000008 Rmu_sc0001981.1_g000017 Rmu_sc0002040.1_g000056 Rmu_sc0002755.1_g000018 Rmu_sc0002804.1_g000016 Rmu_sc0002928.1_g000015 Rmu_sc0003040.1_g000008 Rmu_sc0003040.1_g000018 Rmu_sc0004512.1_g000001 Rmu_sc0004512.1_g000004 Rmu_sc0005507.1_g000001 Rmu_sc0005507.1_g000009 Rmu_sc0005507.1_g000033 Rmu_sc0005507.1_g000037 Rmu_sc0005507.1_g000043 Rmu_sc0005507.1_g000047 Rmu_sc0006318.1_g000004 Rmu_sc0006318.1_g000014 Rmu_sc0006318.1_g000021 Rmu_sc0006556.1_g000001 Rmu_sc0007208.1_g000002 Rmu_sc0007208.1_g000003 Rmu_sc0007208.1_g000006 Rmu_sc0007208.1_g000008
rosa_roxburghii Rroxscaffold_1G00044430 Rroxscaffold_2G00103420 Rroxscaffold_2G00103470 Rroxscaffold_2G00103490 Rroxscaffold_2G00103500 Rroxscaffold_2G00103520 Rroxscaffold_2G00103530 Rroxscaffold_2G00103540 Rroxscaffold_2G00103550 Rroxscaffold_2G00103570 Rroxscaffold_2G00103770 Rroxscaffold_2G00103780 Rroxscaffold_2G00103800 Rroxscaffold_2G00103820 Rroxscaffold_2G00103860 Rroxscaffold_2G00103890 Rroxscaffold_2G00103930 Rroxscaffold_2G00103940 Rroxscaffold_2G00104010 Rroxscaffold_2G00104030 Rroxscaffold_2G00104050 Rroxscaffold_2G00104060 Rroxscaffold_2G00104070 Rroxscaffold_2G00104090 Rroxscaffold_2G00104100 Rroxscaffold_2G00104120 Rroxscaffold_2G00104130 Rroxscaffold_4G00331710
rosa_rugosa Rorug02G0367500 Rorug02G0367500 Rorug02G0367600 Rorug02G0367800 Rorug02G0367800 Rorug02G0367900 Rorug02G0368100 Rorug02G0368100 Rorug02G0368100 Rorug02G0368200 Rorug02G0368700 Rorug02G0368900 Rorug05G0155600 Rorug05G0155700 Rorug05G0155800 Rorug05G0156700 Rorug05G0157300
rosa_samantha Rh1AG028000 Rh2AG418700 Rh2AG418900 Rh2AG419000 Rh2AG419100 Rh2AG419400 Rh2AG419600 Rh2AG419800 Rh2AG420400 Rh2AG421000 Rh2BG428500 Rh2BG428600 Rh2BG428800 Rh2BG428900 Rh2BG429300 Rh2BG429400 Rh2BG429700 Rh2BG429900 Rh2BG430000 Rh2BG430700 Rh2CG405100 Rh2CG405200 Rh2CG405300 Rh2CG405500 Rh2CG405600 Rh2CG405700 Rh2CG406000 Rh2CG406100 Rh2CG406300 Rh2CG406600 Rh2CG406700 Rh2CG407500 Rh2CG408100 Rh2DG438500 Rh3DG123900 Rh3DG124000 Rh5BG249700 Rh5BG482500 Rh5CG281500 Rh5CG507300 Rh7DG133300
rosa_wichuraiana Rw0G019720 Rw0G019730 Rw0G019750 Rw0G023010 Rw2G034340 Rw2G034350 Rw2G034370 Rw2G034380 Rw2G034400 Rw2G034430 Rw2G034470 Rw2G034480 Rw2G034510 Rw5G022890 Rw5G026410 Rw5G032710 Rw5G042850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 156
AciI CCGC 1 cut(s) 156
AclWI GGATC 2 cut(s) 247, 358
AfaI GTAC 2 cut(s) 8, 246
AfiI CCNNNNNNNGG 1 cut(s) 289
AflIII ACRYGT 1 cut(s) 198
AgsI TTSAA 2 cut(s) 127, 385
AluBI AGCT 4 cut(s) 92, 96, 231, 304
AluI AGCT 4 cut(s) 92, 96, 231, 304
AlwI GGATC 2 cut(s) 247, 358
AlwNI CAGNNNCTG 1 cut(s) 248
Ama87I CYCGRG 1 cut(s) 151
AsuHPI GGTGA 1 cut(s) 52
AsuNHI GCTAGC 1 cut(s) 92
AvaI CYCGRG 1 cut(s) 151
BfaI CTAG 1 cut(s) 93
BisI GCNGC 1 cut(s) 157
BlsI GCNGC 1 cut(s) 158
BmcAI AGTACT 1 cut(s) 8
BmeT110I CYCGRG 1 cut(s) 151
BmsI GCATC 1 cut(s) 66
BmtI GCTAGC 1 cut(s) 96
BsaBI GATNNNNATC 1 cut(s) 355
Bsc4I CCNNNNNNNGG 1 cut(s) 289
Bse1I ACTGG 1 cut(s) 241
Bse8I GATNNNNATC 1 cut(s) 355
BseJI GATNNNNATC 1 cut(s) 355
BseLI CCNNNNNNNGG 1 cut(s) 289
BseMII CTCAG 1 cut(s) 240
BseNI ACTGG 1 cut(s) 241
BsiHKCI CYCGRG 1 cut(s) 151
BslFI GGGAC 1 cut(s) 155
BslI CCNNNNNNNGG 1 cut(s) 289
BsmFI GGGAC 1 cut(s) 155
BsoBI CYCGRG 1 cut(s) 151
Bsp143I GATC 2 cut(s) 239, 350
BspACI CCGC 1 cut(s) 156
BspCNI CTCAG 1 cut(s) 241
BspOI GCTAGC 1 cut(s) 96
BspPI GGATC 2 cut(s) 247, 358
BsrBI CCGCTC 1 cut(s) 156
BsrI ACTGG 1 cut(s) 241
BssMI GATC 2 cut(s) 239, 350
BstC8I GCNNGC 1 cut(s) 94
BstDEI CTNAG 2 cut(s) 88, 249
BstKTI GATC 2 cut(s) 242, 353
BstMBI GATC 2 cut(s) 239, 350
BstNSI RCATGY 1 cut(s) 202
Cac8I GCNNGC 1 cut(s) 94
CaiI CAGNNNCTG 1 cut(s) 248
Csp6I GTAC 2 cut(s) 7, 245
CviAII CATG 3 cut(s) 64, 104, 199
CviJI RGCY 5 cut(s) 92, 96, 159, 231, 304
CviKI_1 RGCY 5 cut(s) 92, 96, 159, 231, 304
CviQI GTAC 2 cut(s) 7, 245
DdeI CTNAG 2 cut(s) 88, 249
DpnI GATC 2 cut(s) 241, 352
DpnII GATC 2 cut(s) 239, 350
Eco88I CYCGRG 1 cut(s) 151
FaeI CATG 3 cut(s) 67, 107, 202
FaqI GGGAC 1 cut(s) 155
FatI CATG 3 cut(s) 63, 103, 198
Fnu4HI GCNGC 1 cut(s) 157
Fsp4HI GCNGC 1 cut(s) 157
FspBI CTAG 1 cut(s) 93
GluI GCNGC 1 cut(s) 157
Hin1II CATG 3 cut(s) 67, 107, 202
HincII GTYRAC 1 cut(s) 101
HindII GTYRAC 1 cut(s) 101
HinfI GANTC 2 cut(s) 15, 107
HphI GGTGA 1 cut(s) 52
Hpy166II GTNNAC 2 cut(s) 101, 314
Hpy188I TCNGA 2 cut(s) 14, 258
Hpy188III TCNNGA 1 cut(s) 194
Hpy8I GTNNAC 2 cut(s) 101, 314
HpyAV CCTTC 1 cut(s) 384
HpyF3I CTNAG 2 cut(s) 88, 249
Hsp92II CATG 3 cut(s) 67, 107, 202
Kzo9I GATC 2 cut(s) 239, 350
LpnPI CCDG 4 cut(s) 150, 222, 261, 287
LweI GCATC 1 cut(s) 66
MaeI CTAG 1 cut(s) 93
MaeIII GTNAC 1 cut(s) 201
MalI GATC 2 cut(s) 241, 352
MbiI CCGCTC 1 cut(s) 156
MboI GATC 2 cut(s) 239, 350
MboII GAAGA 1 cut(s) 436
MluCI AATT 1 cut(s) 263
MlyI GAGTC 1 cut(s) 24
MnlI CCTC 2 cut(s) 47, 160
MseI TTAA 5 cut(s) 71, 84, 233, 285, 362
MslI CAYNNNNRTG 1 cut(s) 62
NdeII GATC 2 cut(s) 239, 350
NheI GCTAGC 1 cut(s) 92
NlaIII CATG 3 cut(s) 67, 107, 202
NspI RCATGY 1 cut(s) 202
PaeR7I CTCGAG 1 cut(s) 151
PciI ACATGT 1 cut(s) 198
PfeI GAWTC 1 cut(s) 107
PkrI GCNGC 1 cut(s) 158
PleI GAGTC 1 cut(s) 23
PpsI GAGTC 1 cut(s) 23
PscI ACATGT 1 cut(s) 198
PspXI VCTCGAGB 1 cut(s) 151
PstNI CAGNNNCTG 1 cut(s) 248
RsaI GTAC 2 cut(s) 8, 246
RsaNI GTAC 2 cut(s) 7, 245
RseI CAYNNNNRTG 1 cut(s) 62
SaqAI TTAA 5 cut(s) 71, 84, 233, 285, 362
SatI GCNGC 1 cut(s) 157
Sau3AI GATC 2 cut(s) 239, 350
ScaI AGTACT 1 cut(s) 8
SchI GAGTC 1 cut(s) 24
SetI ASST 7 cut(s) 94, 98, 233, 250, 276, 306, 443
SfaNI GCATC 1 cut(s) 66
Sfr274I CTCGAG 1 cut(s) 151
SlaI CTCGAG 1 cut(s) 151
SmiMI CAYNNNNRTG 1 cut(s) 62
SmlI CTYRAG 1 cut(s) 151
SmoI CTYRAG 1 cut(s) 151
Sse9I AATT 1 cut(s) 263
SsiI CCGC 1 cut(s) 156
SspMI CTAG 1 cut(s) 93
TaqI TCGA 3 cut(s) 152, 333, 341
TasI AATT 1 cut(s) 263
TatI WGTACW 1 cut(s) 6
TauI GCSGC 1 cut(s) 159
TfiI GAWTC 1 cut(s) 107
Tru1I TTAA 5 cut(s) 71, 84, 233, 285, 362
Tru9I TTAA 5 cut(s) 71, 84, 233, 285, 362
TspDTI ATGAA 2 cut(s) 34, 168
XceI RCATGY 1 cut(s) 202
XhoI CTCGAG 1 cut(s) 151
XspI CTAG 1 cut(s) 93
ZrmI AGTACT 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.