RchiOBHm_Chr1g0317541

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000083
Physical Location & Seq
Forward (+)
5065766 .. 5067287
1522 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54785

Sequence Viewer

Length: 789 bp
ATGCGAGTTCATCATACAAACTTGACTAGCCTCGTTGGATATTGTGATGACGAAATCAACAAAGGGCTTGTTTACGAGTACATGGCCAATGGAAACTTGCAAGCATTTCTCTCAGATCAAAGTTCAGGTGTCTTGACTTGGGAAGGAAGACTTCAAATAGCAACAGAAGCTGCGCAAGGATTGGAGTATCTACACTATGGTTGTAAACCAGCTATGATCCATAGAGATGTGAAATCAACAAACATCCTACTCAATGAAAAGTTCAAAGCCAAACTCTCTGATTTTGGCCTGTCAAGAAACTTTGCTTCAGGAGATGTGTCTCATATAGTTACATGTGTTGCTGGTACTCCTGGCTACCTTGCACCTGAGTACCATCAATCAAACAGGCTGAATGAGAAGAGTGATGTTTATAGCTTTGGGATTGTACTGCTTGAGATTATCACTGGTCAACCTGTTTATTCAAGAACAAATGGTGAGAGAACTCACATTATTAGATGGGTTGAACTCATGCTTCTGCAAGGAGACATTTACAGTATCATCGATCCGATGTTAGAGAGAACCTTCAATGTCAACTCTGCCTGGAAAGCTATTGAAATAGCAATGGCATGTGTATCTGCAGAGGCCAGCAAGAGGCCAGTCATGAGCAATGTTGTGATGGAACTAAAAAAGTGTTTGCCAGCACAGCTCGATCTAACAAACCACAGCAGCTATGAAACTGAACTAGGAAGTTCCATTGATGTGGTGTCTCAAAATAACTCCATCACTATGATGTGTCCCTCAGTAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_4 LRR_8 Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

262

Amino Acids

29.19

Weight (kDa)

5.75

Isoelectric Point (pI)

41.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 2 - 220 1.1e-35 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 2 - 218 1.3e-35 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000083)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07560 AT1G51790 AT1G51790 AT1G51790 AT1G51800 AT1G51805 AT1G51805 AT1G51810 AT1G51820 AT1G51820 AT1G51830 AT1G51830 AT1G51840 AT1G51840 AT1G51840 AT1G51840 AT1G51840 AT1G51850 AT1G51850 AT1G51860 AT1G51860 AT1G51870 AT1G51870 AT1G51880 AT1G51880 AT1G51880 AT1G51890 AT1G51890 AT1G51890 AT1G51890 AT1G51890 AT1G51910 AT2G04300 AT2G04300 AT2G28960 AT2G28960 AT2G28970 AT2G28970 AT2G28990 AT2G28990 AT2G29000 AT3G21340 AT3G46350 AT5G59616 AT5G59650 AT5G59650 AT5G59660 AT5G59660 AT5G59660 AT5G59670 AT5G59670 AT5G59680
fragaria_vesca FvH4_2g03270 FvH4_3g21300 FvH4_6g32660 FvH4_6g32660 FvH4_6g32670 FvH4_6g32670 FvH4_6g32690 FvH4_6g32690 FvH4_6g32691 FvH4_6g32700 FvH4_6g32740 FvH4_6g32750 FvH4_6g33210 FvH4_6g33210 FvH4_7g24270 FvH4_7g24280 FvH4_7g24291 FvH4_7g24300
malus_domestica MD09G1198400.v1.1 MD09G1198600.v1.1 MD09G1199100.v1.1 MD09G1199200.v1.1 MD09G1199300.v1.1 MD09G1199500.v1.1 MD09G1199600.v1.1 MD17G1179300.v1.1 MD17G1180200.v1.1 MD17G1266000.v1.1
prunus_persica Prupe.1G438900_v2.0.a1 Prupe.1G439000_v2.0.a1 Prupe.1G439100_v2.0.a1 Prupe.3G019400_v2.0.a1 Prupe.3G021900_v2.0.a1 Prupe.3G054500_v2.0.a1 Prupe.3G054500_v2.0.a1 Prupe.3G055100_v2.0.a1 Prupe.3G055400_v2.0.a1 Prupe.3G055500_v2.0.a1 Prupe.3G055600_v2.0.a1 Prupe.3G055700_v2.0.a1 Prupe.3G055800_v2.0.a1 Prupe.3G055900_v2.0.a1 Prupe.3G055900_v2.0.a1 Prupe.3G056000_v2.0.a1 Prupe.3G056000_v2.0.a1 Prupe.3G056100_v2.0.a1 Prupe.3G209600_v2.0.a1 Prupe.3G209700_v2.0.a1 Prupe.6G291100_v2.0.a1 Prupe.7G208900_v2.0.a1 Prupe.8G038300_v2.0.a1
pyrus_communis pycom09g11570 pycom09g11580 pycom09g11610 pycom09g11630 pycom09g11640 pycom17g18840 pycom17g18910 pycom17g18930 pycom17g18940
rosa_chinensis RchiOBHm_Chr1g0317521 RchiOBHm_Chr1g0317541 RchiOBHm_Chr2g0123351 RchiOBHm_Chr2g0141181 RchiOBHm_Chr2g0141191 RchiOBHm_Chr2g0141211 RchiOBHm_Chr2g0141221 RchiOBHm_Chr2g0141261 RchiOBHm_Chr2g0141271 RchiOBHm_Chr2g0141311 RchiOBHm_Chr2g0141331 RchiOBHm_Chr2g0141371 RchiOBHm_Chr2g0141391 RchiOBHm_Chr2g0141401 RchiOBHm_Chr2g0141431 RchiOBHm_Chr2g0141481 RchiOBHm_Chr2g0141491 RchiOBHm_Chr2g0141591 RchiOBHm_Chr2g0141601 RchiOBHm_Chr2g0141611 RchiOBHm_Chr2g0141631 RchiOBHm_Chr2g0141641 RchiOBHm_Chr2g0141661 RchiOBHm_Chr2g0141681 RchiOBHm_Chr2g0141701 RchiOBHm_Chr2g0141781 RchiOBHm_Chr2g0141811 RchiOBHm_Chr2g0141821 RchiOBHm_Chr3g0479311 RchiOBHm_Chr3g0495751 RchiOBHm_Chr4g0404741 RchiOBHm_Chr4g0410341 RchiOBHm_Chr4g0418371 RchiOBHm_Chr4g0438651 RchiOBHm_Chr5g0036411 RchiOBHm_Chr5g0036491 RchiOBHm_Chr5g0042391 RchiOBHm_Chr6g0279871 RchiOBHm_Chr7g0192921 RchiOBHm_Chr7g0214901 RchiOBHm_Chr7g0234931
rosa_laevigata RLG00000003432 RLG00000008806 RLG00000013062 RLG00000019514 RLG00000019923 RLG00000019924 RLG00000019925 RLG00000019930 RLG00000019931 RLG00000019934 RLG00000019937 RLG00000019938 RLG00000033697
rosa_multiflora Rmu_co8002302.1_g000001 Rmu_sc0000147.1_g000031 Rmu_sc0000463.1_g000005 Rmu_sc0000712.1_g000003 Rmu_sc0001483.1_g000017 Rmu_sc0001554.1_g000002 Rmu_sc0001554.1_g000005 Rmu_sc0001554.1_g000008 Rmu_sc0001981.1_g000017 Rmu_sc0002040.1_g000056 Rmu_sc0002755.1_g000018 Rmu_sc0002804.1_g000016 Rmu_sc0002928.1_g000015 Rmu_sc0003040.1_g000008 Rmu_sc0003040.1_g000018 Rmu_sc0004512.1_g000001 Rmu_sc0004512.1_g000004 Rmu_sc0005507.1_g000001 Rmu_sc0005507.1_g000009 Rmu_sc0005507.1_g000033 Rmu_sc0005507.1_g000037 Rmu_sc0005507.1_g000043 Rmu_sc0005507.1_g000047 Rmu_sc0006318.1_g000004 Rmu_sc0006318.1_g000014 Rmu_sc0006318.1_g000021 Rmu_sc0006556.1_g000001 Rmu_sc0007208.1_g000002 Rmu_sc0007208.1_g000003 Rmu_sc0007208.1_g000006 Rmu_sc0007208.1_g000008
rosa_roxburghii Rroxscaffold_1G00044430 Rroxscaffold_2G00103420 Rroxscaffold_2G00103470 Rroxscaffold_2G00103490 Rroxscaffold_2G00103500 Rroxscaffold_2G00103520 Rroxscaffold_2G00103530 Rroxscaffold_2G00103540 Rroxscaffold_2G00103550 Rroxscaffold_2G00103570 Rroxscaffold_2G00103770 Rroxscaffold_2G00103780 Rroxscaffold_2G00103800 Rroxscaffold_2G00103820 Rroxscaffold_2G00103860 Rroxscaffold_2G00103890 Rroxscaffold_2G00103930 Rroxscaffold_2G00103940 Rroxscaffold_2G00104010 Rroxscaffold_2G00104030 Rroxscaffold_2G00104050 Rroxscaffold_2G00104060 Rroxscaffold_2G00104070 Rroxscaffold_2G00104090 Rroxscaffold_2G00104100 Rroxscaffold_2G00104120 Rroxscaffold_2G00104130 Rroxscaffold_4G00331710
rosa_rugosa Rorug02G0367500 Rorug02G0367500 Rorug02G0367600 Rorug02G0367800 Rorug02G0367800 Rorug02G0367900 Rorug02G0368100 Rorug02G0368100 Rorug02G0368100 Rorug02G0368200 Rorug02G0368700 Rorug02G0368900 Rorug05G0155600 Rorug05G0155700 Rorug05G0155800 Rorug05G0156700 Rorug05G0157300
rosa_samantha Rh1AG028000 Rh2AG418700 Rh2AG418900 Rh2AG419000 Rh2AG419100 Rh2AG419400 Rh2AG419600 Rh2AG419800 Rh2AG420400 Rh2AG421000 Rh2BG428500 Rh2BG428600 Rh2BG428800 Rh2BG428900 Rh2BG429300 Rh2BG429400 Rh2BG429700 Rh2BG429900 Rh2BG430000 Rh2BG430700 Rh2CG405100 Rh2CG405200 Rh2CG405300 Rh2CG405500 Rh2CG405600 Rh2CG405700 Rh2CG406000 Rh2CG406100 Rh2CG406300 Rh2CG406600 Rh2CG406700 Rh2CG407500 Rh2CG408100 Rh2DG438500 Rh3DG123900 Rh3DG124000 Rh5BG249700 Rh5BG482500 Rh5CG281500 Rh5CG507300 Rh7DG133300
rosa_wichuraiana Rw0G019720 Rw0G019730 Rw0G019750 Rw0G023010 Rw2G034340 Rw2G034350 Rw2G034370 Rw2G034380 Rw2G034400 Rw2G034430 Rw2G034470 Rw2G034480 Rw2G034510 Rw5G022890 Rw5G026410 Rw5G032710 Rw5G042850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 174
AclWI GGATC 2 cut(s) 211, 536
AcoI YGGCCR 1 cut(s) 84
AcuI CTGAAG 1 cut(s) 291
AfaI GTAC 4 cut(s) 80, 346, 371, 426
AfiI CCNNNNNNNGG 2 cut(s) 630, 783
AflIII ACRYGT 1 cut(s) 332
AgsI TTSAA 6 cut(s) 155, 265, 462, 503, 565, 593
AjnI CCWGG 2 cut(s) 349, 578
AluBI AGCT 6 cut(s) 170, 212, 414, 587, 685, 708
AluI AGCT 6 cut(s) 170, 212, 414, 587, 685, 708
Alw26I GTCTC 3 cut(s) 324, 516, 750
AlwI GGATC 2 cut(s) 211, 536
AlwNI CAGNNNCTG 1 cut(s) 170
AoxI GGCC 4 cut(s) 84, 286, 621, 632
ApeKI GCWGC 2 cut(s) 170, 705
AspLEI GCGC 1 cut(s) 175
AsuHPI GGTGA 1 cut(s) 485
BaeI ACNNNNGTAYC 2 cut(s) 353, 386
BalI TGGCCA 1 cut(s) 86
BbsI GAAGAC 1 cut(s) 154
BbvI GCAGC 2 cut(s) 157, 717
BccI CCATC 4 cut(s) 381, 489, 649, 767
BciT130I CCWGG 2 cut(s) 351, 580
BcoDI GTCTC 3 cut(s) 324, 516, 750
BfaI CTAG 2 cut(s) 27, 722
BfmI CTRYAG 1 cut(s) 615
BisI GCNGC 2 cut(s) 171, 706
BlsI GCNGC 2 cut(s) 172, 707
Bme1390I CCNGG 2 cut(s) 351, 580
BmrFI CCNGG 2 cut(s) 351, 580
BpiI GAAGAC 1 cut(s) 154
BpuEI CTTGAG 1 cut(s) 452
Bsa29I ATCGAT 1 cut(s) 540
Bsc4I CCNNNNNNNGG 2 cut(s) 630, 783
Bse1I ACTGG 2 cut(s) 448, 635
Bse3DI GCAATG 2 cut(s) 606, 652
BseBI CCWGG 2 cut(s) 351, 580
BseCI ATCGAT 1 cut(s) 540
BseGI GGATG 1 cut(s) 243
BseLI CCNNNNNNNGG 2 cut(s) 630, 783
BseMI GCAATG 2 cut(s) 606, 652
BseMII CTCAG 2 cut(s) 126, 357
BseNI ACTGG 2 cut(s) 448, 635
BseXI GCAGC 2 cut(s) 157, 717
BshFI GGCC 4 cut(s) 86, 288, 623, 634
BshVI ATCGAT 1 cut(s) 540
BslFI GGGAC 1 cut(s) 759
BslI CCNNNNNNNGG 2 cut(s) 630, 783
BsmAI GTCTC 3 cut(s) 324, 516, 750
BsmFI GGGAC 1 cut(s) 759
BsnI GGCC 4 cut(s) 86, 288, 623, 634
Bsp143I GATC 4 cut(s) 115, 216, 541, 688
BspANI GGCC 4 cut(s) 86, 288, 623, 634
BspCNI CTCAG 2 cut(s) 125, 358
BspDI ATCGAT 1 cut(s) 540
BspHI TCATGA 1 cut(s) 639
BspMAI CTGCAG 1 cut(s) 619
BspPI GGATC 2 cut(s) 211, 536
BsrDI GCAATG 2 cut(s) 606, 652
BsrI ACTGG 2 cut(s) 448, 635
BssMI GATC 4 cut(s) 115, 216, 541, 688
Bst2UI CCWGG 2 cut(s) 351, 580
Bst4CI ACNGT 1 cut(s) 533
Bst6I CTCTTC 1 cut(s) 392
BstC8I GCNNGC 3 cut(s) 102, 625, 678
BstDEI CTNAG 3 cut(s) 112, 366, 778
BstENI CCTNNNNNAGG 1 cut(s) 781
BstF5I GGATG 1 cut(s) 243
BstHHI GCGC 1 cut(s) 175
BstKTI GATC 4 cut(s) 118, 219, 544, 691
BstMAI GTCTC 3 cut(s) 324, 516, 750
BstMBI GATC 4 cut(s) 115, 216, 541, 688
BstMWI GCNNNNNNNGC 3 cut(s) 167, 584, 682
BstNI CCWGG 2 cut(s) 351, 580
BstNSI RCATGY 2 cut(s) 336, 609
BstSCI CCNGG 2 cut(s) 349, 578
BstSFI CTRYAG 1 cut(s) 615
BstV1I GCAGC 2 cut(s) 157, 717
BstV2I GAAGAC 1 cut(s) 154
BstXI CCANNNNNNTGG 1 cut(s) 739
Bsu15I ATCGAT 1 cut(s) 540
BsuRI GGCC 4 cut(s) 86, 288, 623, 634
BsuTUI ATCGAT 1 cut(s) 540
BtsCI GGATG 1 cut(s) 243
BtsIMutI CAGTG 1 cut(s) 441
Cac8I GCNNGC 3 cut(s) 102, 625, 678
CaiI CAGNNNCTG 1 cut(s) 170
CciI TCATGA 1 cut(s) 639
CfoI GCGC 1 cut(s) 175
ClaI ATCGAT 1 cut(s) 540
Csp6I GTAC 4 cut(s) 79, 345, 370, 425
CviAII CATG 5 cut(s) 82, 333, 508, 606, 640
CviQI GTAC 4 cut(s) 79, 345, 370, 425
DdeI CTNAG 3 cut(s) 112, 366, 778
DpnI GATC 4 cut(s) 117, 218, 543, 690
DpnII GATC 4 cut(s) 115, 216, 541, 688
EaeI YGGCCR 1 cut(s) 84
Eam1104I CTCTTC 1 cut(s) 392
EarI CTCTTC 1 cut(s) 392
Eco57I CTGAAG 1 cut(s) 291
EcoNI CCTNNNNNAGG 1 cut(s) 781
EcoRII CCWGG 2 cut(s) 349, 578
FaeI CATG 5 cut(s) 85, 336, 511, 609, 643
FalI AAGNNNNNCTT 2 cut(s) 135, 167
FaqI GGGAC 1 cut(s) 759
FatI CATG 5 cut(s) 81, 332, 507, 605, 639
Fnu4HI GCNGC 2 cut(s) 171, 706
FokI GGATG 1 cut(s) 230
Fsp4HI GCNGC 2 cut(s) 171, 706
FspBI CTAG 2 cut(s) 27, 722
FspI TGCGCA 1 cut(s) 174
GlaI GCGC 1 cut(s) 174
GluI GCNGC 2 cut(s) 171, 706
HaeIII GGCC 4 cut(s) 86, 288, 623, 634
HhaI GCGC 1 cut(s) 175
Hin1II CATG 5 cut(s) 85, 336, 511, 609, 643
Hin6I GCGC 1 cut(s) 173
HinP1I GCGC 1 cut(s) 173
HincII GTYRAC 2 cut(s) 449, 571
HindII GTYRAC 2 cut(s) 449, 571
HphI GGTGA 1 cut(s) 485
Hpy166II GTNNAC 4 cut(s) 73, 206, 449, 571
Hpy188I TCNGA 3 cut(s) 115, 280, 546
Hpy188III TCNNGA 5 cut(s) 133, 294, 309, 462, 640
Hpy8I GTNNAC 4 cut(s) 73, 206, 449, 571
HpyAV CCTTC 2 cut(s) 137, 571
HpyCH4III ACNGT 1 cut(s) 533
HpyCH4V TGCA 4 cut(s) 100, 362, 517, 617
HpyF10VI GCNNNNNNNGC 3 cut(s) 167, 584, 682
HpyF3I CTNAG 3 cut(s) 112, 366, 778
Hsp92II CATG 5 cut(s) 85, 336, 511, 609, 643
HspAI GCGC 1 cut(s) 173
Kzo9I GATC 4 cut(s) 115, 216, 541, 688
Lsp1109I GCAGC 2 cut(s) 157, 717
MaeI CTAG 2 cut(s) 27, 722
MaeIII GTNAC 1 cut(s) 328
MalI GATC 4 cut(s) 117, 218, 543, 690
MboI GATC 4 cut(s) 115, 216, 541, 688
MboII GAAGA 2 cut(s) 159, 409
MlsI TGGCCA 1 cut(s) 86
MluNI TGGCCA 1 cut(s) 86
MmeI TCCRAC 1 cut(s) 16
MnlI CCTC 4 cut(s) 41, 613, 624, 787
Mox20I TGGCCA 1 cut(s) 86
MscI TGGCCA 1 cut(s) 86
MslI CAYNNNNRTG 4 cut(s) 225, 737, 764, 767
Msp20I TGGCCA 1 cut(s) 86
MspR9I CCNGG 2 cut(s) 351, 580
MvaI CCWGG 2 cut(s) 351, 580
MwoI GCNNNNNNNGC 3 cut(s) 167, 584, 682
NdeII GATC 4 cut(s) 115, 216, 541, 688
NlaIII CATG 5 cut(s) 85, 336, 511, 609, 643
NsbI TGCGCA 1 cut(s) 174
NspI RCATGY 2 cut(s) 336, 609
PagI TCATGA 1 cut(s) 639
PciI ACATGT 1 cut(s) 332
PkrI GCNGC 2 cut(s) 172, 707
PscI ACATGT 1 cut(s) 332
Psp6I CCWGG 2 cut(s) 349, 578
PspGI CCWGG 2 cut(s) 349, 578
PstI CTGCAG 1 cut(s) 619
PstNI CAGNNNCTG 1 cut(s) 170
RsaI GTAC 4 cut(s) 80, 346, 371, 426
RsaNI GTAC 4 cut(s) 79, 345, 370, 425
RseI CAYNNNNRTG 4 cut(s) 225, 737, 764, 767
SatI GCNGC 2 cut(s) 171, 706
Sau3AI GATC 4 cut(s) 115, 216, 541, 688
ScrFI CCNGG 2 cut(s) 351, 580
SfcI CTRYAG 1 cut(s) 615
SmiMI CAYNNNNRTG 4 cut(s) 225, 737, 764, 767
SmlI CTYRAG 1 cut(s) 431
SmoI CTYRAG 1 cut(s) 431
SspMI CTAG 2 cut(s) 27, 722
StyD4I CCNGG 2 cut(s) 349, 578
TaaI ACNGT 1 cut(s) 533
TaqI TCGA 2 cut(s) 540, 687
TatI WGTACW 2 cut(s) 78, 424
TscAI CASTG 1 cut(s) 448
TseI GCWGC 2 cut(s) 170, 705
TspDTI ATGAA 2 cut(s) 270, 726
TspRI CASTG 1 cut(s) 448
XagI CCTNNNNNAGG 1 cut(s) 781
XceI RCATGY 2 cut(s) 336, 609
XspI CTAG 2 cut(s) 27, 722
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.