Rh1AG028000

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Forward (+)
5051602 .. 5054960
3359 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG028000.1

Sequence Viewer

Length: 699 bp
ATGCCTTCCCTGCTGCATTCATTAGTCTCTGAAGCTCGACCACATGACCAAAAGAAAACTTGTTCCACGCGGTATCCAAAGGATATTTATGATCGCTTTTGGTATCCCTATGAGGATGTTGACAATCAGTGGTTAACATTGGATACTTCATTCACCGTCGACTTTGACAAACATAACAGCTTCCAACCAGCATCAATTGTCATGAGCACAGCTGCCACATCACAAAATCCTAATGTTCCCTTGAATTTATGGTGGGATCCTCCTATTGATGCAGACGATACAGAATATTATGTTTACATGCACTTTGCAGAAATTGAACAGCTCCAATCCAACGAGTCCAGAATGCAGTACATTACTAACCATGGAGAGCTCTACCGGAAGTCATTTGCTGCTAGTTATTTGTACACCACAACAATTTACAGCAGGACAGGTTTGAGAGGAGGGCAGAATTTTTCAATCATCAAGGATGACAACTCTACCCTTCCACCCAGTATCAATGGAGTTGAGGTTTACACACTGAAAGAATTCCTAGAATTAGAAACAAAGCAAGAGGATGTTGAAGCAATCACAAACGTCAAGTCAACTTATGAAATTACAAAGAATTGGCAGGGAGATCCATGTCTCCCACTAAACTACTCGTGGGAAGGCCTAAAATGTAGCTATCCTGAAGATGACTCCCCAAGAATCATTTCCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

232

Amino Acids

26.95

Weight (kDa)

4.63

Isoelectric Point (pI)

39.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 12 - 172 1.9e-35 Malectin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000083)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07560 AT1G51790 AT1G51790 AT1G51790 AT1G51800 AT1G51805 AT1G51805 AT1G51810 AT1G51820 AT1G51820 AT1G51830 AT1G51830 AT1G51840 AT1G51840 AT1G51840 AT1G51840 AT1G51840 AT1G51850 AT1G51850 AT1G51860 AT1G51860 AT1G51870 AT1G51870 AT1G51880 AT1G51880 AT1G51880 AT1G51890 AT1G51890 AT1G51890 AT1G51890 AT1G51890 AT1G51910 AT2G04300 AT2G04300 AT2G28960 AT2G28960 AT2G28970 AT2G28970 AT2G28990 AT2G28990 AT2G29000 AT3G21340 AT3G46350 AT5G59616 AT5G59650 AT5G59650 AT5G59660 AT5G59660 AT5G59660 AT5G59670 AT5G59670 AT5G59680
fragaria_vesca FvH4_2g03270 FvH4_3g21300 FvH4_6g32660 FvH4_6g32660 FvH4_6g32670 FvH4_6g32670 FvH4_6g32690 FvH4_6g32690 FvH4_6g32691 FvH4_6g32700 FvH4_6g32740 FvH4_6g32750 FvH4_6g33210 FvH4_6g33210 FvH4_7g24270 FvH4_7g24280 FvH4_7g24291 FvH4_7g24300
malus_domestica MD09G1198400.v1.1 MD09G1198600.v1.1 MD09G1199100.v1.1 MD09G1199200.v1.1 MD09G1199300.v1.1 MD09G1199500.v1.1 MD09G1199600.v1.1 MD17G1179300.v1.1 MD17G1180200.v1.1 MD17G1266000.v1.1
prunus_persica Prupe.1G438900_v2.0.a1 Prupe.1G439000_v2.0.a1 Prupe.1G439100_v2.0.a1 Prupe.3G019400_v2.0.a1 Prupe.3G021900_v2.0.a1 Prupe.3G054500_v2.0.a1 Prupe.3G054500_v2.0.a1 Prupe.3G055100_v2.0.a1 Prupe.3G055400_v2.0.a1 Prupe.3G055500_v2.0.a1 Prupe.3G055600_v2.0.a1 Prupe.3G055700_v2.0.a1 Prupe.3G055800_v2.0.a1 Prupe.3G055900_v2.0.a1 Prupe.3G055900_v2.0.a1 Prupe.3G056000_v2.0.a1 Prupe.3G056000_v2.0.a1 Prupe.3G056100_v2.0.a1 Prupe.3G209600_v2.0.a1 Prupe.3G209700_v2.0.a1 Prupe.6G291100_v2.0.a1 Prupe.7G208900_v2.0.a1 Prupe.8G038300_v2.0.a1
pyrus_communis pycom09g11570 pycom09g11580 pycom09g11610 pycom09g11630 pycom09g11640 pycom17g18840 pycom17g18910 pycom17g18930 pycom17g18940
rosa_chinensis RchiOBHm_Chr1g0317521 RchiOBHm_Chr1g0317541 RchiOBHm_Chr2g0123351 RchiOBHm_Chr2g0141181 RchiOBHm_Chr2g0141191 RchiOBHm_Chr2g0141211 RchiOBHm_Chr2g0141221 RchiOBHm_Chr2g0141261 RchiOBHm_Chr2g0141271 RchiOBHm_Chr2g0141311 RchiOBHm_Chr2g0141331 RchiOBHm_Chr2g0141371 RchiOBHm_Chr2g0141391 RchiOBHm_Chr2g0141401 RchiOBHm_Chr2g0141431 RchiOBHm_Chr2g0141481 RchiOBHm_Chr2g0141491 RchiOBHm_Chr2g0141591 RchiOBHm_Chr2g0141601 RchiOBHm_Chr2g0141611 RchiOBHm_Chr2g0141631 RchiOBHm_Chr2g0141641 RchiOBHm_Chr2g0141661 RchiOBHm_Chr2g0141681 RchiOBHm_Chr2g0141701 RchiOBHm_Chr2g0141781 RchiOBHm_Chr2g0141811 RchiOBHm_Chr2g0141821 RchiOBHm_Chr3g0479311 RchiOBHm_Chr3g0495751 RchiOBHm_Chr4g0404741 RchiOBHm_Chr4g0410341 RchiOBHm_Chr4g0418371 RchiOBHm_Chr4g0438651 RchiOBHm_Chr5g0036411 RchiOBHm_Chr5g0036491 RchiOBHm_Chr5g0042391 RchiOBHm_Chr6g0279871 RchiOBHm_Chr7g0192921 RchiOBHm_Chr7g0214901 RchiOBHm_Chr7g0234931
rosa_laevigata RLG00000003432 RLG00000008806 RLG00000013062 RLG00000019514 RLG00000019923 RLG00000019924 RLG00000019925 RLG00000019930 RLG00000019931 RLG00000019934 RLG00000019937 RLG00000019938 RLG00000033697
rosa_multiflora Rmu_co8002302.1_g000001 Rmu_sc0000147.1_g000031 Rmu_sc0000463.1_g000005 Rmu_sc0000712.1_g000003 Rmu_sc0001483.1_g000017 Rmu_sc0001554.1_g000002 Rmu_sc0001554.1_g000005 Rmu_sc0001554.1_g000008 Rmu_sc0001981.1_g000017 Rmu_sc0002040.1_g000056 Rmu_sc0002755.1_g000018 Rmu_sc0002804.1_g000016 Rmu_sc0002928.1_g000015 Rmu_sc0003040.1_g000008 Rmu_sc0003040.1_g000018 Rmu_sc0004512.1_g000001 Rmu_sc0004512.1_g000004 Rmu_sc0005507.1_g000001 Rmu_sc0005507.1_g000009 Rmu_sc0005507.1_g000033 Rmu_sc0005507.1_g000037 Rmu_sc0005507.1_g000043 Rmu_sc0005507.1_g000047 Rmu_sc0006318.1_g000004 Rmu_sc0006318.1_g000014 Rmu_sc0006318.1_g000021 Rmu_sc0006556.1_g000001 Rmu_sc0007208.1_g000002 Rmu_sc0007208.1_g000003 Rmu_sc0007208.1_g000006 Rmu_sc0007208.1_g000008
rosa_roxburghii Rroxscaffold_1G00044430 Rroxscaffold_2G00103420 Rroxscaffold_2G00103470 Rroxscaffold_2G00103490 Rroxscaffold_2G00103500 Rroxscaffold_2G00103520 Rroxscaffold_2G00103530 Rroxscaffold_2G00103540 Rroxscaffold_2G00103550 Rroxscaffold_2G00103570 Rroxscaffold_2G00103770 Rroxscaffold_2G00103780 Rroxscaffold_2G00103800 Rroxscaffold_2G00103820 Rroxscaffold_2G00103860 Rroxscaffold_2G00103890 Rroxscaffold_2G00103930 Rroxscaffold_2G00103940 Rroxscaffold_2G00104010 Rroxscaffold_2G00104030 Rroxscaffold_2G00104050 Rroxscaffold_2G00104060 Rroxscaffold_2G00104070 Rroxscaffold_2G00104090 Rroxscaffold_2G00104100 Rroxscaffold_2G00104120 Rroxscaffold_2G00104130 Rroxscaffold_4G00331710
rosa_rugosa Rorug02G0367500 Rorug02G0367500 Rorug02G0367600 Rorug02G0367800 Rorug02G0367800 Rorug02G0367900 Rorug02G0368100 Rorug02G0368100 Rorug02G0368100 Rorug02G0368200 Rorug02G0368700 Rorug02G0368900 Rorug05G0155600 Rorug05G0155700 Rorug05G0155800 Rorug05G0156700 Rorug05G0157300
rosa_samantha Rh1AG028000 Rh2AG418700 Rh2AG418900 Rh2AG419000 Rh2AG419100 Rh2AG419400 Rh2AG419600 Rh2AG419800 Rh2AG420400 Rh2AG421000 Rh2BG428500 Rh2BG428600 Rh2BG428800 Rh2BG428900 Rh2BG429300 Rh2BG429400 Rh2BG429700 Rh2BG429900 Rh2BG430000 Rh2BG430700 Rh2CG405100 Rh2CG405200 Rh2CG405300 Rh2CG405500 Rh2CG405600 Rh2CG405700 Rh2CG406000 Rh2CG406100 Rh2CG406300 Rh2CG406600 Rh2CG406700 Rh2CG407500 Rh2CG408100 Rh2DG438500 Rh3DG123900 Rh3DG124000 Rh5BG249700 Rh5BG482500 Rh5CG281500 Rh5CG507300 Rh7DG133300
rosa_wichuraiana Rw0G019720 Rw0G019730 Rw0G019750 Rw0G023010 Rw2G034340 Rw2G034350 Rw2G034370 Rw2G034380 Rw2G034400 Rw2G034430 Rw2G034470 Rw2G034480 Rw2G034510 Rw5G022890 Rw5G026410 Rw5G032710 Rw5G042850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 159
AccII CGCG 1 cut(s) 70
AciI CCGC 1 cut(s) 70
AclWI GGATC 3 cut(s) 251, 264, 608
AcsI RAATTY 3 cut(s) 244, 448, 524
AcuI CTGAAG 2 cut(s) 51, 687
AfaI GTAC 2 cut(s) 350, 404
AgsI TTSAA 4 cut(s) 244, 317, 456, 560
AjuI GAANNNNNNNTTGG 1 cut(s) 673
AluBI AGCT 6 cut(s) 35, 180, 212, 322, 370, 660
AluI AGCT 6 cut(s) 35, 180, 212, 322, 370, 660
Alw21I GWGCWC 2 cut(s) 209, 372
Alw26I GTCTC 2 cut(s) 31, 626
AlwI GGATC 3 cut(s) 251, 264, 608
AoxI GGCC 1 cut(s) 646
ApeKI GCWGC 3 cut(s) 13, 212, 389
ApoI RAATTY 3 cut(s) 244, 448, 524
ArsI GACNNNNNNTTYG 2 cut(s) 563, 595
Asp700I GAANNNNTTC 2 cut(s) 524, 688
AsuHPI GGTGA 1 cut(s) 145
BamHI GGATCC 1 cut(s) 256
BanII GRGCYC 1 cut(s) 372
BauI CACGAG 1 cut(s) 637
Bbv12I GWGCWC 2 cut(s) 209, 372
BbvI GCAGC 2 cut(s) 199, 376
BciVI GTATCC 3 cut(s) 84, 114, 136
BcoDI GTCTC 2 cut(s) 31, 626
BfaI CTAG 2 cut(s) 393, 530
BfuI GTATCC 3 cut(s) 84, 114, 136
BisI GCNGC 3 cut(s) 14, 213, 390
BlsI GCNGC 3 cut(s) 15, 214, 391
BmiI GGNNCC 1 cut(s) 258
BmrI ACTGGG 1 cut(s) 483
BmsI GCATC 2 cut(s) 200, 259
BmuI ACTGGG 1 cut(s) 483
BsaJI CCNNGG 1 cut(s) 361
BsaWI WCCGGW 1 cut(s) 375
BsaXI ACNNNNNCTCC 2 cut(s) 492, 522
Bse1I ACTGG 1 cut(s) 489
BseDI CCNNGG 1 cut(s) 361
BseGI GGATG 3 cut(s) 121, 472, 559
BseNI ACTGG 1 cut(s) 489
BseRI GAGGAG 1 cut(s) 453
BseXI GCAGC 2 cut(s) 199, 376
Bsh1236I CGCG 1 cut(s) 70
BshFI GGCC 1 cut(s) 648
BsiHKAI GWGCWC 2 cut(s) 209, 372
BsiSI CCGG 1 cut(s) 376
BsmAI GTCTC 2 cut(s) 31, 626
BsmI GAATGC 2 cut(s) 16, 348
BsnI GGCC 1 cut(s) 648
Bsp1286I GDGCHC 2 cut(s) 209, 372
Bsp1407I TGTACA 1 cut(s) 402
Bsp143I GATC 3 cut(s) 91, 256, 613
Bsp19I CCATGG 1 cut(s) 361
BspACI CCGC 1 cut(s) 70
BspANI GGCC 1 cut(s) 648
BspFNI CGCG 1 cut(s) 70
BspHI TCATGA 1 cut(s) 201
BspLI GGNNCC 1 cut(s) 258
BspPI GGATC 3 cut(s) 251, 264, 608
BsrGI TGTACA 1 cut(s) 402
BsrI ACTGG 1 cut(s) 489
BssECI CCNNGG 1 cut(s) 361
BssMI GATC 3 cut(s) 91, 256, 613
BssSI CACGAG 1 cut(s) 637
BssT1I CCWWGG 1 cut(s) 361
Bst2BI CACGAG 1 cut(s) 637
Bst4CI ACNGT 1 cut(s) 157
BstAUI TGTACA 1 cut(s) 402
BstDSI CCRYGG 1 cut(s) 361
BstF5I GGATG 3 cut(s) 121, 472, 559
BstFNI CGCG 1 cut(s) 70
BstKTI GATC 3 cut(s) 94, 259, 616
BstMAI GTCTC 2 cut(s) 31, 626
BstMBI GATC 3 cut(s) 91, 256, 613
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNSI RCATGY 1 cut(s) 301
BstUI CGCG 1 cut(s) 70
BstV1I GCAGC 2 cut(s) 199, 376
BstX2I RGATCY 2 cut(s) 256, 613
BstYI RGATCY 2 cut(s) 256, 613
BsuI GTATCC 3 cut(s) 84, 114, 136
BsuRI GGCC 1 cut(s) 648
BtgI CCRYGG 1 cut(s) 361
BtsCI GGATG 3 cut(s) 121, 472, 559
BtsIMutI CAGTG 2 cut(s) 134, 515
CciI TCATGA 1 cut(s) 201
Csp6I GTAC 2 cut(s) 349, 403
CviAII CATG 5 cut(s) 44, 202, 298, 362, 618
CviJI RGCY 7 cut(s) 35, 180, 212, 322, 370, 648, 660
CviKI_1 RGCY 7 cut(s) 35, 180, 212, 322, 370, 648, 660
CviQI GTAC 2 cut(s) 349, 403
DpnI GATC 3 cut(s) 93, 258, 615
DpnII GATC 3 cut(s) 91, 256, 613
Ecl136II GAGCTC 1 cut(s) 370
Eco130I CCWWGG 1 cut(s) 361
Eco147I AGGCCT 1 cut(s) 648
Eco24I GRGCYC 1 cut(s) 372
Eco53kI GAGCTC 1 cut(s) 370
Eco57I CTGAAG 2 cut(s) 51, 687
EcoICRI GAGCTC 1 cut(s) 370
EcoRI GAATTC 1 cut(s) 524
EcoT14I CCWWGG 1 cut(s) 361
EcoT38I GRGCYC 1 cut(s) 372
ErhI CCWWGG 1 cut(s) 361
FaeI CATG 5 cut(s) 47, 205, 301, 365, 621
FatI CATG 5 cut(s) 43, 201, 297, 361, 617
FblI GTMKAC 1 cut(s) 159
Fnu4HI GCNGC 3 cut(s) 14, 213, 390
FokI GGATG 3 cut(s) 128, 479, 566
FriOI GRGCYC 1 cut(s) 372
Fsp4HI GCNGC 3 cut(s) 14, 213, 390
FspBI CTAG 2 cut(s) 393, 530
GluI GCNGC 3 cut(s) 14, 213, 390
HaeIII GGCC 1 cut(s) 648
HapII CCGG 1 cut(s) 376
Hin1II CATG 5 cut(s) 47, 205, 301, 365, 621
HincII GTYRAC 4 cut(s) 121, 135, 160, 582
HindII GTYRAC 4 cut(s) 121, 135, 160, 582
HinfI GANTC 3 cut(s) 335, 674, 684
HpaI GTTAAC 1 cut(s) 135
HpaII CCGG 1 cut(s) 376
HphI GGTGA 1 cut(s) 145
Hpy166II GTNNAC 7 cut(s) 121, 135, 160, 295, 405, 511, 582
Hpy188I TCNGA 1 cut(s) 31
Hpy188III TCNNGA 3 cut(s) 202, 339, 665
Hpy8I GTNNAC 7 cut(s) 121, 135, 160, 295, 405, 511, 582
Hpy99I CGWCG 1 cut(s) 161
HpyAV CCTTC 3 cut(s) 15, 491, 638
HpyCH4III ACNGT 1 cut(s) 157
HpyCH4IV ACGT 1 cut(s) 573
HpyCH4V TGCA 5 cut(s) 16, 272, 301, 308, 346
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpySE526I ACGT 1 cut(s) 573
Hsp92II CATG 5 cut(s) 47, 205, 301, 365, 621
KspAI GTTAAC 1 cut(s) 135
Kzo9I GATC 3 cut(s) 91, 256, 613
LmnI GCTCC 1 cut(s) 327
LpnPI CCDG 9 cut(s) 23, 201, 352, 389, 409, 414, 502, 593, 678
Lsp1109I GCAGC 2 cut(s) 199, 376
LweI GCATC 2 cut(s) 200, 259
MaeI CTAG 2 cut(s) 393, 530
MaeII ACGT 1 cut(s) 573
MalI GATC 3 cut(s) 93, 258, 615
MboI GATC 3 cut(s) 91, 256, 613
MboII GAAGA 1 cut(s) 680
MfeI CAATTG 1 cut(s) 195
MflI RGATCY 2 cut(s) 256, 613
MhlI GDGCHC 2 cut(s) 209, 372
MluCI AATT 9 cut(s) 195, 244, 312, 414, 448, 524, 533, 591, 601
MlyI GAGTC 2 cut(s) 344, 668
MmeI TCCRAC 2 cut(s) 208, 354
MnlI CCTC 6 cut(s) 106, 270, 431, 434, 499, 544
MroXI GAANNNNTTC 2 cut(s) 524, 688
MseI TTAA 1 cut(s) 134
MspA1I CMGCKG 1 cut(s) 212
MspI CCGG 1 cut(s) 376
MunI CAATTG 1 cut(s) 195
Mva1269I GAATGC 2 cut(s) 16, 348
MvnI CGCG 1 cut(s) 70
MwoI GCNNNNNNNGC 1 cut(s) 10
NcoI CCATGG 1 cut(s) 361
NdeII GATC 3 cut(s) 91, 256, 613
NlaIII CATG 5 cut(s) 47, 205, 301, 365, 621
NlaIV GGNNCC 1 cut(s) 258
NspI RCATGY 1 cut(s) 301
PagI TCATGA 1 cut(s) 201
PceI AGGCCT 1 cut(s) 648
PctI GAATGC 2 cut(s) 16, 348
PdmI GAANNNNTTC 2 cut(s) 524, 688
PfeI GAWTC 1 cut(s) 684
PkrI GCNGC 3 cut(s) 15, 214, 391
PleI GAGTC 2 cut(s) 343, 668
PpsI GAGTC 2 cut(s) 343, 668
Psp124BI GAGCTC 1 cut(s) 372
PspN4I GGNNCC 1 cut(s) 258
PsuI RGATCY 2 cut(s) 256, 613
PvuII CAGCTG 1 cut(s) 212
RsaI GTAC 2 cut(s) 350, 404
RsaNI GTAC 2 cut(s) 349, 403
SacI GAGCTC 1 cut(s) 372
SalI GTCGAC 1 cut(s) 158
SaqAI TTAA 1 cut(s) 134
SatI GCNGC 3 cut(s) 14, 213, 390
Sau3AI GATC 3 cut(s) 91, 256, 613
SchI GAGTC 2 cut(s) 344, 668
SduI GDGCHC 2 cut(s) 209, 372
SetI ASST 9 cut(s) 37, 182, 214, 324, 372, 433, 510, 576, 662
SfaNI GCATC 2 cut(s) 200, 259
Sse9I AATT 9 cut(s) 195, 244, 312, 414, 448, 524, 533, 591, 601
SseBI AGGCCT 1 cut(s) 648
SsiI CCGC 1 cut(s) 70
SspI AATATT 1 cut(s) 287
SspMI CTAG 2 cut(s) 393, 530
SstI GAGCTC 1 cut(s) 372
StuI AGGCCT 1 cut(s) 648
StyI CCWWGG 1 cut(s) 361
TaaI ACNGT 1 cut(s) 157
TaiI ACGT 1 cut(s) 576
TaqI TCGA 2 cut(s) 37, 159
TasI AATT 9 cut(s) 195, 244, 312, 414, 448, 524, 533, 591, 601
TatI WGTACW 2 cut(s) 348, 402
TfiI GAWTC 1 cut(s) 684
Tru1I TTAA 1 cut(s) 134
Tru9I TTAA 1 cut(s) 134
TscAI CASTG 2 cut(s) 134, 522
TseI GCWGC 3 cut(s) 13, 212, 389
TspDTI ATGAA 3 cut(s) 9, 138, 603
TspRI CASTG 2 cut(s) 134, 522
XapI RAATTY 3 cut(s) 244, 448, 524
XceI RCATGY 1 cut(s) 301
XmiI GTMKAC 1 cut(s) 159
XmnI GAANNNNTTC 2 cut(s) 524, 688
XspI CTAG 2 cut(s) 393, 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.