Rroxscaffold_2G00103470

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000083
Physical Location & Seq
Reverse (-)
26103743 .. 26109869
6127 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00103470.1

Sequence Viewer

Length: 696 bp
ATGAAACGGGTTTTAGCCCTCAACTTCCTAACGCTTTGTTTTCCCTTCTGTTTTGTTACTATTCTCGTACTATTACTATTATGGAGAGTGCACAATGATGATCGGGAGTGGTGGTCTATTTTTTACATGTCTCTCTCAGGCTTCATTAGCATAGATTGTGGAAAATCGGGTTCTAGCTATACTGAAAAAGTTACTGGAATTACTTATATTTCGGATTCAAACTTCGTCGACACCGGTGAAAGTAACTTCATATTGGATAAATATTTGGACGCCTATCAGCATCAGGAACTGCTACAAAATAAACATTACAAGTGGAACCAGATATTTGATTCGAGCAATTTTTGTGCATGGGAATTATGGTGGGGGCTGGACAAGTTACCAAAATTTGATCTCTATCTTGGACCAAATTTGTGGGATTCAGTAGAGCTGACGAATGCATCCATTGCGGTAACCAAGGAGCTCATACATTATGTCCCAAGACCCAGAAACTATATACAACTTTGTCCGGTGAATAAGCTCTCTGGAGTTCCATTTATATCAGCAATAGAGTTGAGGCCTCTTCCCAACTCAACTTATTCTGAAGAGGGTCATTGGCACTTGTCTCACGGCCACTATTTCTTTGCGGTGCTTACCGCTGAAAGATTGGCAGCAGGGCTCAGCGGTGGAGACACAATGATGCAGCAGTGCCAGACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_4 LRR_8 Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

231

Amino Acids

26.7

Weight (kDa)

5.71

Isoelectric Point (pI)

43.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 51 - 95 7e-08 Malectin-like domain
Malectin_like PF12819 123 - 196 1.2e-19 Malectin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000083)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07560 AT1G51790 AT1G51790 AT1G51790 AT1G51800 AT1G51805 AT1G51805 AT1G51810 AT1G51820 AT1G51820 AT1G51830 AT1G51830 AT1G51840 AT1G51840 AT1G51840 AT1G51840 AT1G51840 AT1G51850 AT1G51850 AT1G51860 AT1G51860 AT1G51870 AT1G51870 AT1G51880 AT1G51880 AT1G51880 AT1G51890 AT1G51890 AT1G51890 AT1G51890 AT1G51890 AT1G51910 AT2G04300 AT2G04300 AT2G28960 AT2G28960 AT2G28970 AT2G28970 AT2G28990 AT2G28990 AT2G29000 AT3G21340 AT3G46350 AT5G59616 AT5G59650 AT5G59650 AT5G59660 AT5G59660 AT5G59660 AT5G59670 AT5G59670 AT5G59680
fragaria_vesca FvH4_2g03270 FvH4_3g21300 FvH4_6g32660 FvH4_6g32660 FvH4_6g32670 FvH4_6g32670 FvH4_6g32690 FvH4_6g32690 FvH4_6g32691 FvH4_6g32700 FvH4_6g32740 FvH4_6g32750 FvH4_6g33210 FvH4_6g33210 FvH4_7g24270 FvH4_7g24280 FvH4_7g24291 FvH4_7g24300
malus_domestica MD09G1198400.v1.1 MD09G1198600.v1.1 MD09G1199100.v1.1 MD09G1199200.v1.1 MD09G1199300.v1.1 MD09G1199500.v1.1 MD09G1199600.v1.1 MD17G1179300.v1.1 MD17G1180200.v1.1 MD17G1266000.v1.1
prunus_persica Prupe.1G438900_v2.0.a1 Prupe.1G439000_v2.0.a1 Prupe.1G439100_v2.0.a1 Prupe.3G019400_v2.0.a1 Prupe.3G021900_v2.0.a1 Prupe.3G054500_v2.0.a1 Prupe.3G054500_v2.0.a1 Prupe.3G055100_v2.0.a1 Prupe.3G055400_v2.0.a1 Prupe.3G055500_v2.0.a1 Prupe.3G055600_v2.0.a1 Prupe.3G055700_v2.0.a1 Prupe.3G055800_v2.0.a1 Prupe.3G055900_v2.0.a1 Prupe.3G055900_v2.0.a1 Prupe.3G056000_v2.0.a1 Prupe.3G056000_v2.0.a1 Prupe.3G056100_v2.0.a1 Prupe.3G209600_v2.0.a1 Prupe.3G209700_v2.0.a1 Prupe.6G291100_v2.0.a1 Prupe.7G208900_v2.0.a1 Prupe.8G038300_v2.0.a1
pyrus_communis pycom09g11570 pycom09g11580 pycom09g11610 pycom09g11630 pycom09g11640 pycom17g18840 pycom17g18910 pycom17g18930 pycom17g18940
rosa_chinensis RchiOBHm_Chr1g0317521 RchiOBHm_Chr1g0317541 RchiOBHm_Chr2g0123351 RchiOBHm_Chr2g0141181 RchiOBHm_Chr2g0141191 RchiOBHm_Chr2g0141211 RchiOBHm_Chr2g0141221 RchiOBHm_Chr2g0141261 RchiOBHm_Chr2g0141271 RchiOBHm_Chr2g0141311 RchiOBHm_Chr2g0141331 RchiOBHm_Chr2g0141371 RchiOBHm_Chr2g0141391 RchiOBHm_Chr2g0141401 RchiOBHm_Chr2g0141431 RchiOBHm_Chr2g0141481 RchiOBHm_Chr2g0141491 RchiOBHm_Chr2g0141591 RchiOBHm_Chr2g0141601 RchiOBHm_Chr2g0141611 RchiOBHm_Chr2g0141631 RchiOBHm_Chr2g0141641 RchiOBHm_Chr2g0141661 RchiOBHm_Chr2g0141681 RchiOBHm_Chr2g0141701 RchiOBHm_Chr2g0141781 RchiOBHm_Chr2g0141811 RchiOBHm_Chr2g0141821 RchiOBHm_Chr3g0479311 RchiOBHm_Chr3g0495751 RchiOBHm_Chr4g0404741 RchiOBHm_Chr4g0410341 RchiOBHm_Chr4g0418371 RchiOBHm_Chr4g0438651 RchiOBHm_Chr5g0036411 RchiOBHm_Chr5g0036491 RchiOBHm_Chr5g0042391 RchiOBHm_Chr6g0279871 RchiOBHm_Chr7g0192921 RchiOBHm_Chr7g0214901 RchiOBHm_Chr7g0234931
rosa_laevigata RLG00000003432 RLG00000008806 RLG00000013062 RLG00000019514 RLG00000019923 RLG00000019924 RLG00000019925 RLG00000019930 RLG00000019931 RLG00000019934 RLG00000019937 RLG00000019938 RLG00000033697
rosa_multiflora Rmu_co8002302.1_g000001 Rmu_sc0000147.1_g000031 Rmu_sc0000463.1_g000005 Rmu_sc0000712.1_g000003 Rmu_sc0001483.1_g000017 Rmu_sc0001554.1_g000002 Rmu_sc0001554.1_g000005 Rmu_sc0001554.1_g000008 Rmu_sc0001981.1_g000017 Rmu_sc0002040.1_g000056 Rmu_sc0002755.1_g000018 Rmu_sc0002804.1_g000016 Rmu_sc0002928.1_g000015 Rmu_sc0003040.1_g000008 Rmu_sc0003040.1_g000018 Rmu_sc0004512.1_g000001 Rmu_sc0004512.1_g000004 Rmu_sc0005507.1_g000001 Rmu_sc0005507.1_g000009 Rmu_sc0005507.1_g000033 Rmu_sc0005507.1_g000037 Rmu_sc0005507.1_g000043 Rmu_sc0005507.1_g000047 Rmu_sc0006318.1_g000004 Rmu_sc0006318.1_g000014 Rmu_sc0006318.1_g000021 Rmu_sc0006556.1_g000001 Rmu_sc0007208.1_g000002 Rmu_sc0007208.1_g000003 Rmu_sc0007208.1_g000006 Rmu_sc0007208.1_g000008
rosa_roxburghii Rroxscaffold_1G00044430 Rroxscaffold_2G00103420 Rroxscaffold_2G00103470 Rroxscaffold_2G00103490 Rroxscaffold_2G00103500 Rroxscaffold_2G00103520 Rroxscaffold_2G00103530 Rroxscaffold_2G00103540 Rroxscaffold_2G00103550 Rroxscaffold_2G00103570 Rroxscaffold_2G00103770 Rroxscaffold_2G00103780 Rroxscaffold_2G00103800 Rroxscaffold_2G00103820 Rroxscaffold_2G00103860 Rroxscaffold_2G00103890 Rroxscaffold_2G00103930 Rroxscaffold_2G00103940 Rroxscaffold_2G00104010 Rroxscaffold_2G00104030 Rroxscaffold_2G00104050 Rroxscaffold_2G00104060 Rroxscaffold_2G00104070 Rroxscaffold_2G00104090 Rroxscaffold_2G00104100 Rroxscaffold_2G00104120 Rroxscaffold_2G00104130 Rroxscaffold_4G00331710
rosa_rugosa Rorug02G0367500 Rorug02G0367500 Rorug02G0367600 Rorug02G0367800 Rorug02G0367800 Rorug02G0367900 Rorug02G0368100 Rorug02G0368100 Rorug02G0368100 Rorug02G0368200 Rorug02G0368700 Rorug02G0368900 Rorug05G0155600 Rorug05G0155700 Rorug05G0155800 Rorug05G0156700 Rorug05G0157300
rosa_samantha Rh1AG028000 Rh2AG418700 Rh2AG418900 Rh2AG419000 Rh2AG419100 Rh2AG419400 Rh2AG419600 Rh2AG419800 Rh2AG420400 Rh2AG421000 Rh2BG428500 Rh2BG428600 Rh2BG428800 Rh2BG428900 Rh2BG429300 Rh2BG429400 Rh2BG429700 Rh2BG429900 Rh2BG430000 Rh2BG430700 Rh2CG405100 Rh2CG405200 Rh2CG405300 Rh2CG405500 Rh2CG405600 Rh2CG405700 Rh2CG406000 Rh2CG406100 Rh2CG406300 Rh2CG406600 Rh2CG406700 Rh2CG407500 Rh2CG408100 Rh2DG438500 Rh3DG123900 Rh3DG124000 Rh5BG249700 Rh5BG482500 Rh5CG281500 Rh5CG507300 Rh7DG133300
rosa_wichuraiana Rw0G019720 Rw0G019730 Rw0G019750 Rw0G023010 Rw2G034340 Rw2G034350 Rw2G034370 Rw2G034380 Rw2G034400 Rw2G034430 Rw2G034470 Rw2G034480 Rw2G034510 Rw5G022890 Rw5G026410 Rw5G032710 Rw5G042850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 228
AciI CCGC 4 cut(s) 446, 623, 633, 660
AcoI YGGCCR 1 cut(s) 607
AcsI RAATTY 2 cut(s) 383, 406
AcuI CTGAAG 1 cut(s) 600
AcyI GRCGYC 1 cut(s) 270
AfaI GTAC 1 cut(s) 69
AflIII ACRYGT 1 cut(s) 126
AgeI ACCGGT 1 cut(s) 233
AgsI TTSAA 1 cut(s) 219
AluBI AGCT 4 cut(s) 177, 427, 460, 517
AluI AGCT 4 cut(s) 177, 427, 460, 517
Alw21I GWGCWC 2 cut(s) 93, 462
Alw26I GTCTC 3 cut(s) 135, 606, 660
Alw44I GTGCAC 1 cut(s) 89
AlwNI CAGNNNCTG 1 cut(s) 289
AoxI GGCC 2 cut(s) 554, 607
ApaLI GTGCAC 1 cut(s) 89
ApeKI GCWGC 2 cut(s) 647, 679
ApoI RAATTY 2 cut(s) 383, 406
AsiGI ACCGGT 1 cut(s) 233
AspS9I GGNCC 1 cut(s) 401
AsuHPI GGTGA 2 cut(s) 248, 520
AvaII GGWCC 1 cut(s) 401
BaeGI GKGCMC 1 cut(s) 93
BanII GRGCYC 2 cut(s) 462, 657
Bbv12I GWGCWC 2 cut(s) 93, 462
BbvI GCAGC 2 cut(s) 659, 691
BceAI ACGGC 1 cut(s) 622
BcoDI GTCTC 3 cut(s) 135, 606, 660
BfaI CTAG 1 cut(s) 174
BisI GCNGC 2 cut(s) 648, 680
BlpI GCTNAGC 1 cut(s) 656
BlsI GCNGC 2 cut(s) 649, 681
Bme18I GGWCC 1 cut(s) 401
BmgT120I GGNCC 1 cut(s) 401
BmiI GGNNCC 1 cut(s) 317
BmsI GCATC 3 cut(s) 289, 446, 666
BpmI CTGGAG 1 cut(s) 543
Bpu1102I GCTNAGC 1 cut(s) 656
BsaBI GATNNNNATC 1 cut(s) 393
BsaHI GRCGYC 1 cut(s) 270
BsaJI CCNNGG 1 cut(s) 453
BsaWI WCCGGW 2 cut(s) 233, 505
BsaXI ACNNNNNCTCC 2 cut(s) 98, 128
Bse118I RCCGGY 1 cut(s) 233
Bse1I ACTGG 1 cut(s) 199
Bse3DI GCAATG 1 cut(s) 441
Bse8I GATNNNNATC 1 cut(s) 393
BseDI CCNNGG 1 cut(s) 453
BseGI GGATG 1 cut(s) 437
BseJI GATNNNNATC 1 cut(s) 393
BseMI GCAATG 1 cut(s) 441
BseMII CTCAG 2 cut(s) 150, 670
BseNI ACTGG 1 cut(s) 199
BseSI GKGCMC 1 cut(s) 93
BseXI GCAGC 2 cut(s) 659, 691
BshFI GGCC 2 cut(s) 556, 609
BshTI ACCGGT 1 cut(s) 233
BsiHKAI GWGCWC 2 cut(s) 93, 462
BsiSI CCGG 2 cut(s) 234, 506
BslFI GGGAC 1 cut(s) 458
BsmAI GTCTC 3 cut(s) 135, 606, 660
BsmFI GGGAC 1 cut(s) 458
BsmI GAATGC 1 cut(s) 439
BsnI GGCC 2 cut(s) 556, 609
Bsp1286I GDGCHC 3 cut(s) 93, 462, 657
Bsp143I GATC 2 cut(s) 100, 388
Bsp1720I GCTNAGC 1 cut(s) 656
BspACI CCGC 4 cut(s) 446, 623, 633, 660
BspANI GGCC 2 cut(s) 556, 609
BspCNI CTCAG 2 cut(s) 149, 669
BspLI GGNNCC 1 cut(s) 317
BsrDI GCAATG 1 cut(s) 441
BsrFI RCCGGY 1 cut(s) 233
BsrI ACTGG 1 cut(s) 199
BssAI RCCGGY 1 cut(s) 233
BssECI CCNNGG 1 cut(s) 453
BssMI GATC 2 cut(s) 100, 388
BssNI GRCGYC 1 cut(s) 270
BssT1I CCWWGG 1 cut(s) 453
Bst6I CTCTTC 2 cut(s) 564, 576
BstACI GRCGYC 1 cut(s) 270
BstAPI GCANNNNNTGC 1 cut(s) 443
BstDEI CTNAG 2 cut(s) 136, 656
BstEII GGTNACC 1 cut(s) 448
BstF5I GGATG 1 cut(s) 437
BstKTI GATC 2 cut(s) 103, 391
BstMAI GTCTC 3 cut(s) 135, 606, 660
BstMBI GATC 2 cut(s) 100, 388
BstMWI GCNNNNNNNGC 2 cut(s) 147, 443
BstNSI RCATGY 1 cut(s) 130
BstPI GGTNACC 1 cut(s) 448
BstSLI GKGCMC 1 cut(s) 93
BstV1I GCAGC 2 cut(s) 659, 691
BstXI CCANNNNNNTGG 1 cut(s) 411
BsuRI GGCC 2 cut(s) 556, 609
BtsCI GGATG 1 cut(s) 437
BtsI GCAGTG 1 cut(s) 689
BtsIMutI CAGTG 1 cut(s) 689
CaiI CAGNNNCTG 1 cut(s) 289
Cfr10I RCCGGY 1 cut(s) 233
Cfr13I GGNCC 1 cut(s) 401
CseI GACGC 1 cut(s) 278
Csp6I GTAC 1 cut(s) 68
CspAI ACCGGT 1 cut(s) 233
CviAII CATG 2 cut(s) 127, 348
CviQI GTAC 1 cut(s) 68
DdeI CTNAG 2 cut(s) 136, 656
DpnI GATC 2 cut(s) 102, 390
DpnII GATC 2 cut(s) 100, 388
EaeI YGGCCR 1 cut(s) 607
Eam1104I CTCTTC 2 cut(s) 564, 576
EarI CTCTTC 2 cut(s) 564, 576
Ecl136II GAGCTC 1 cut(s) 460
Eco130I CCWWGG 1 cut(s) 453
Eco147I AGGCCT 1 cut(s) 556
Eco24I GRGCYC 2 cut(s) 462, 657
Eco47I GGWCC 1 cut(s) 401
Eco53kI GAGCTC 1 cut(s) 460
Eco57I CTGAAG 1 cut(s) 600
Eco91I GGTNACC 1 cut(s) 448
EcoICRI GAGCTC 1 cut(s) 460
EcoO65I GGTNACC 1 cut(s) 448
EcoT14I CCWWGG 1 cut(s) 453
EcoT22I ATGCAT 1 cut(s) 439
EcoT38I GRGCYC 2 cut(s) 462, 657
ErhI CCWWGG 1 cut(s) 453
FaeI CATG 2 cut(s) 130, 351
FaqI GGGAC 1 cut(s) 458
FatI CATG 2 cut(s) 126, 347
FblI GTMKAC 1 cut(s) 228
Fnu4HI GCNGC 2 cut(s) 648, 680
FokI GGATG 1 cut(s) 424
FriOI GRGCYC 2 cut(s) 462, 657
Fsp4HI GCNGC 2 cut(s) 648, 680
FspBI CTAG 1 cut(s) 174
GluI GCNGC 2 cut(s) 648, 680
GsuI CTGGAG 1 cut(s) 543
HaeIII GGCC 2 cut(s) 556, 609
HapII CCGG 2 cut(s) 234, 506
HgaI GACGC 1 cut(s) 278
Hin1I GRCGYC 1 cut(s) 270
Hin1II CATG 2 cut(s) 130, 351
HincII GTYRAC 1 cut(s) 229
HindII GTYRAC 1 cut(s) 229
HinfI GANTC 3 cut(s) 215, 329, 416
HpaII CCGG 2 cut(s) 234, 506
HphI GGTGA 2 cut(s) 248, 520
Hpy166II GTNNAC 2 cut(s) 91, 229
Hpy188I TCNGA 2 cut(s) 214, 580
Hpy188III TCNNGA 3 cut(s) 104, 284, 522
Hpy8I GTNNAC 2 cut(s) 91, 229
Hpy99I CGWCG 1 cut(s) 230
HpyAV CCTTC 1 cut(s) 55
HpyCH4V TGCA 4 cut(s) 91, 347, 437, 679
HpyF10VI GCNNNNNNNGC 2 cut(s) 147, 443
HpyF3I CTNAG 2 cut(s) 136, 656
Hsp92I GRCGYC 1 cut(s) 270
Hsp92II CATG 2 cut(s) 130, 351
Kzo9I GATC 2 cut(s) 100, 388
LmnI GCTCC 1 cut(s) 457
Lsp1109I GCAGC 2 cut(s) 659, 691
LweI GCATC 3 cut(s) 289, 446, 666
MaeI CTAG 1 cut(s) 174
MaeIII GTNAC 5 cut(s) 55, 190, 242, 375, 448
MalI GATC 2 cut(s) 102, 390
MboI GATC 2 cut(s) 100, 388
MboII GAAGA 2 cut(s) 551, 593
MhlI GDGCHC 3 cut(s) 93, 462, 657
MluCI AATT 5 cut(s) 198, 337, 353, 383, 406
MnlI CCTC 4 cut(s) 29, 546, 567, 577
Mph1103I ATGCAT 1 cut(s) 439
MslI CAYNNNNRTG 2 cut(s) 96, 674
MspA1I CMGCKG 2 cut(s) 635, 660
MspI CCGG 2 cut(s) 234, 506
Mva1269I GAATGC 1 cut(s) 439
MwoI GCNNNNNNNGC 2 cut(s) 147, 443
NdeII GATC 2 cut(s) 100, 388
NlaIII CATG 2 cut(s) 130, 351
NlaIV GGNNCC 1 cut(s) 317
NsiI ATGCAT 1 cut(s) 439
NspI RCATGY 1 cut(s) 130
PceI AGGCCT 1 cut(s) 556
PciI ACATGT 1 cut(s) 126
PctI GAATGC 1 cut(s) 439
PfeI GAWTC 3 cut(s) 215, 329, 416
PinAI ACCGGT 1 cut(s) 233
PkrI GCNGC 2 cut(s) 649, 681
PscI ACATGT 1 cut(s) 126
Psp124BI GAGCTC 1 cut(s) 462
PspEI GGTNACC 1 cut(s) 448
PspN4I GGNNCC 1 cut(s) 317
PspPI GGNCC 1 cut(s) 401
PstNI CAGNNNCTG 1 cut(s) 289
RsaI GTAC 1 cut(s) 69
RsaNI GTAC 1 cut(s) 68
RseI CAYNNNNRTG 2 cut(s) 96, 674
SacI GAGCTC 1 cut(s) 462
SalI GTCGAC 1 cut(s) 227
SatI GCNGC 2 cut(s) 648, 680
Sau3AI GATC 2 cut(s) 100, 388
Sau96I GGNCC 1 cut(s) 401
SduI GDGCHC 3 cut(s) 93, 462, 657
SetI ASST 4 cut(s) 179, 429, 462, 519
SfaNI GCATC 3 cut(s) 289, 446, 666
SgrAI CRCCGGYG 1 cut(s) 233
SinI GGWCC 1 cut(s) 401
SmiMI CAYNNNNRTG 2 cut(s) 96, 674
Sse9I AATT 5 cut(s) 198, 337, 353, 383, 406
SseBI AGGCCT 1 cut(s) 556
SsiI CCGC 4 cut(s) 446, 623, 633, 660
SspI AATATT 1 cut(s) 263
SspMI CTAG 1 cut(s) 174
SstI GAGCTC 1 cut(s) 462
StuI AGGCCT 1 cut(s) 556
StyI CCWWGG 1 cut(s) 453
TaqI TCGA 2 cut(s) 228, 332
TasI AATT 5 cut(s) 198, 337, 353, 383, 406
TfiI GAWTC 3 cut(s) 215, 329, 416
TscAI CASTG 1 cut(s) 689
TseI GCWGC 2 cut(s) 647, 679
TspDTI ATGAA 3 cut(s) 17, 133, 238
TspRI CASTG 1 cut(s) 689
VneI GTGCAC 1 cut(s) 89
VpaK11BI GGWCC 1 cut(s) 401
XapI RAATTY 2 cut(s) 383, 406
XceI RCATGY 1 cut(s) 130
XmiI GTMKAC 1 cut(s) 228
XspI CTAG 1 cut(s) 174
Zsp2I ATGCAT 1 cut(s) 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.