Rh2CG405200

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Reverse (-)
55188960 .. 55189595
636 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG405200.1

Sequence Viewer

Length: 486 bp
ATGGACGTTGAAACTAGCGAAATTAATATGATATATATGAGGAACATGGTTTGGCTTTACTTCAGGTACTACTTGACAAGCAGGTTAAACGAGAAAAGTGATACTTATAGCTTTGGGATTGTGCTGTTGGAGATCATCACAAGTCGACCTGTTATAACAGGAACGCTTGAGAGGATTCACATTAGCCAATGGGTTGGTTTCATGCTTGCGCAAGGTGACATTAACAGTATTGTTGATCCGAGATTAGAGAGAAATTTCAATGTCAACTCTGTCTGGAAAGTTGTGGAGATAGCAATGGCATGCGTGTCTCCAAACGCCACCAAAAGGCCAACGATGAGTCAGGTACTGATGGAACTGAAGGAGTGCATGGCCACGGAAGAACTGTCTCAGAAAAAGCAGATGGGATATGAAACTGAATTAGGAGAACCAGTTGAGATGGTGTCTCTAAATGATTCTATCAGAATGCTACGTCCCTCAGTTAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

161

Amino Acids

18.67

Weight (kDa)

5.29

Isoelectric Point (pI)

51.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000083)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07560 AT1G51790 AT1G51790 AT1G51790 AT1G51800 AT1G51805 AT1G51805 AT1G51810 AT1G51820 AT1G51820 AT1G51830 AT1G51830 AT1G51840 AT1G51840 AT1G51840 AT1G51840 AT1G51840 AT1G51850 AT1G51850 AT1G51860 AT1G51860 AT1G51870 AT1G51870 AT1G51880 AT1G51880 AT1G51880 AT1G51890 AT1G51890 AT1G51890 AT1G51890 AT1G51890 AT1G51910 AT2G04300 AT2G04300 AT2G28960 AT2G28960 AT2G28970 AT2G28970 AT2G28990 AT2G28990 AT2G29000 AT3G21340 AT3G46350 AT5G59616 AT5G59650 AT5G59650 AT5G59660 AT5G59660 AT5G59660 AT5G59670 AT5G59670 AT5G59680
fragaria_vesca FvH4_2g03270 FvH4_3g21300 FvH4_6g32660 FvH4_6g32660 FvH4_6g32670 FvH4_6g32670 FvH4_6g32690 FvH4_6g32690 FvH4_6g32691 FvH4_6g32700 FvH4_6g32740 FvH4_6g32750 FvH4_6g33210 FvH4_6g33210 FvH4_7g24270 FvH4_7g24280 FvH4_7g24291 FvH4_7g24300
malus_domestica MD09G1198400.v1.1 MD09G1198600.v1.1 MD09G1199100.v1.1 MD09G1199200.v1.1 MD09G1199300.v1.1 MD09G1199500.v1.1 MD09G1199600.v1.1 MD17G1179300.v1.1 MD17G1180200.v1.1 MD17G1266000.v1.1
prunus_persica Prupe.1G438900_v2.0.a1 Prupe.1G439000_v2.0.a1 Prupe.1G439100_v2.0.a1 Prupe.3G019400_v2.0.a1 Prupe.3G021900_v2.0.a1 Prupe.3G054500_v2.0.a1 Prupe.3G054500_v2.0.a1 Prupe.3G055100_v2.0.a1 Prupe.3G055400_v2.0.a1 Prupe.3G055500_v2.0.a1 Prupe.3G055600_v2.0.a1 Prupe.3G055700_v2.0.a1 Prupe.3G055800_v2.0.a1 Prupe.3G055900_v2.0.a1 Prupe.3G055900_v2.0.a1 Prupe.3G056000_v2.0.a1 Prupe.3G056000_v2.0.a1 Prupe.3G056100_v2.0.a1 Prupe.3G209600_v2.0.a1 Prupe.3G209700_v2.0.a1 Prupe.6G291100_v2.0.a1 Prupe.7G208900_v2.0.a1 Prupe.8G038300_v2.0.a1
pyrus_communis pycom09g11570 pycom09g11580 pycom09g11610 pycom09g11630 pycom09g11640 pycom17g18840 pycom17g18910 pycom17g18930 pycom17g18940
rosa_chinensis RchiOBHm_Chr1g0317521 RchiOBHm_Chr1g0317541 RchiOBHm_Chr2g0123351 RchiOBHm_Chr2g0141181 RchiOBHm_Chr2g0141191 RchiOBHm_Chr2g0141211 RchiOBHm_Chr2g0141221 RchiOBHm_Chr2g0141261 RchiOBHm_Chr2g0141271 RchiOBHm_Chr2g0141311 RchiOBHm_Chr2g0141331 RchiOBHm_Chr2g0141371 RchiOBHm_Chr2g0141391 RchiOBHm_Chr2g0141401 RchiOBHm_Chr2g0141431 RchiOBHm_Chr2g0141481 RchiOBHm_Chr2g0141491 RchiOBHm_Chr2g0141591 RchiOBHm_Chr2g0141601 RchiOBHm_Chr2g0141611 RchiOBHm_Chr2g0141631 RchiOBHm_Chr2g0141641 RchiOBHm_Chr2g0141661 RchiOBHm_Chr2g0141681 RchiOBHm_Chr2g0141701 RchiOBHm_Chr2g0141781 RchiOBHm_Chr2g0141811 RchiOBHm_Chr2g0141821 RchiOBHm_Chr3g0479311 RchiOBHm_Chr3g0495751 RchiOBHm_Chr4g0404741 RchiOBHm_Chr4g0410341 RchiOBHm_Chr4g0418371 RchiOBHm_Chr4g0438651 RchiOBHm_Chr5g0036411 RchiOBHm_Chr5g0036491 RchiOBHm_Chr5g0042391 RchiOBHm_Chr6g0279871 RchiOBHm_Chr7g0192921 RchiOBHm_Chr7g0214901 RchiOBHm_Chr7g0234931
rosa_laevigata RLG00000003432 RLG00000008806 RLG00000013062 RLG00000019514 RLG00000019923 RLG00000019924 RLG00000019925 RLG00000019930 RLG00000019931 RLG00000019934 RLG00000019937 RLG00000019938 RLG00000033697
rosa_multiflora Rmu_co8002302.1_g000001 Rmu_sc0000147.1_g000031 Rmu_sc0000463.1_g000005 Rmu_sc0000712.1_g000003 Rmu_sc0001483.1_g000017 Rmu_sc0001554.1_g000002 Rmu_sc0001554.1_g000005 Rmu_sc0001554.1_g000008 Rmu_sc0001981.1_g000017 Rmu_sc0002040.1_g000056 Rmu_sc0002755.1_g000018 Rmu_sc0002804.1_g000016 Rmu_sc0002928.1_g000015 Rmu_sc0003040.1_g000008 Rmu_sc0003040.1_g000018 Rmu_sc0004512.1_g000001 Rmu_sc0004512.1_g000004 Rmu_sc0005507.1_g000001 Rmu_sc0005507.1_g000009 Rmu_sc0005507.1_g000033 Rmu_sc0005507.1_g000037 Rmu_sc0005507.1_g000043 Rmu_sc0005507.1_g000047 Rmu_sc0006318.1_g000004 Rmu_sc0006318.1_g000014 Rmu_sc0006318.1_g000021 Rmu_sc0006556.1_g000001 Rmu_sc0007208.1_g000002 Rmu_sc0007208.1_g000003 Rmu_sc0007208.1_g000006 Rmu_sc0007208.1_g000008
rosa_roxburghii Rroxscaffold_1G00044430 Rroxscaffold_2G00103420 Rroxscaffold_2G00103470 Rroxscaffold_2G00103490 Rroxscaffold_2G00103500 Rroxscaffold_2G00103520 Rroxscaffold_2G00103530 Rroxscaffold_2G00103540 Rroxscaffold_2G00103550 Rroxscaffold_2G00103570 Rroxscaffold_2G00103770 Rroxscaffold_2G00103780 Rroxscaffold_2G00103800 Rroxscaffold_2G00103820 Rroxscaffold_2G00103860 Rroxscaffold_2G00103890 Rroxscaffold_2G00103930 Rroxscaffold_2G00103940 Rroxscaffold_2G00104010 Rroxscaffold_2G00104030 Rroxscaffold_2G00104050 Rroxscaffold_2G00104060 Rroxscaffold_2G00104070 Rroxscaffold_2G00104090 Rroxscaffold_2G00104100 Rroxscaffold_2G00104120 Rroxscaffold_2G00104130 Rroxscaffold_4G00331710
rosa_rugosa Rorug02G0367500 Rorug02G0367500 Rorug02G0367600 Rorug02G0367800 Rorug02G0367800 Rorug02G0367900 Rorug02G0368100 Rorug02G0368100 Rorug02G0368100 Rorug02G0368200 Rorug02G0368700 Rorug02G0368900 Rorug05G0155600 Rorug05G0155700 Rorug05G0155800 Rorug05G0156700 Rorug05G0157300
rosa_samantha Rh1AG028000 Rh2AG418700 Rh2AG418900 Rh2AG419000 Rh2AG419100 Rh2AG419400 Rh2AG419600 Rh2AG419800 Rh2AG420400 Rh2AG421000 Rh2BG428500 Rh2BG428600 Rh2BG428800 Rh2BG428900 Rh2BG429300 Rh2BG429400 Rh2BG429700 Rh2BG429900 Rh2BG430000 Rh2BG430700 Rh2CG405100 Rh2CG405200 Rh2CG405300 Rh2CG405500 Rh2CG405600 Rh2CG405700 Rh2CG406000 Rh2CG406100 Rh2CG406300 Rh2CG406600 Rh2CG406700 Rh2CG407500 Rh2CG408100 Rh2DG438500 Rh3DG123900 Rh3DG124000 Rh5BG249700 Rh5BG482500 Rh5CG281500 Rh5CG507300 Rh7DG133300
rosa_wichuraiana Rw0G019720 Rw0G019730 Rw0G019750 Rw0G023010 Rw2G034340 Rw2G034350 Rw2G034370 Rw2G034380 Rw2G034400 Rw2G034430 Rw2G034470 Rw2G034480 Rw2G034510 Rw5G022890 Rw5G026410 Rw5G032710 Rw5G042850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 155
Acc16I TGCGCA 1 cut(s) 210
Acc36I ACCTGC 1 cut(s) 72
AccI GTMKAC 1 cut(s) 145
AclWI GGATC 1 cut(s) 230
AcoI YGGCCR 1 cut(s) 369
AcsI RAATTY 1 cut(s) 253
AcuI CTGAAG 2 cut(s) 46, 377
AfaI GTAC 2 cut(s) 68, 345
AfiI CCNNNNNNNGG 2 cut(s) 324, 480
AgsI TTSAA 2 cut(s) 11, 259
AluBI AGCT 1 cut(s) 111
AluI AGCT 1 cut(s) 111
Alw26I GTCTC 3 cut(s) 312, 390, 447
AlwI GGATC 1 cut(s) 230
AlwNI CAGNNNCTG 1 cut(s) 346
AoxI GGCC 2 cut(s) 326, 369
ApoI RAATTY 1 cut(s) 253
AseI ATTAAT 1 cut(s) 24
AspLEI GCGC 1 cut(s) 211
AsuHPI GGTGA 1 cut(s) 227
BalI TGGCCA 1 cut(s) 371
BccI CCATC 3 cut(s) 343, 394, 430
BcoDI GTCTC 3 cut(s) 312, 390, 447
BfaI CTAG 1 cut(s) 15
BfuAI ACCTGC 1 cut(s) 72
BpuEI CTTGAG 1 cut(s) 188
BsaJI CCNNGG 1 cut(s) 372
BsaXI ACNNNNNCTCC 2 cut(s) 414, 444
Bsc4I CCNNNNNNNGG 2 cut(s) 324, 480
Bse1I ACTGG 1 cut(s) 428
Bse3DI GCAATG 1 cut(s) 300
BseDI CCNNGG 1 cut(s) 372
BseLI CCNNNNNNNGG 2 cut(s) 324, 480
BseMI GCAATG 1 cut(s) 300
BseMII CTCAG 1 cut(s) 401
BseNI ACTGG 1 cut(s) 428
BshFI GGCC 2 cut(s) 328, 371
BslFI GGGAC 1 cut(s) 456
BslI CCNNNNNNNGG 2 cut(s) 324, 480
BsmAI GTCTC 3 cut(s) 312, 390, 447
BsmFI GGGAC 1 cut(s) 456
BsmI GAATGC 1 cut(s) 468
BsnI GGCC 2 cut(s) 328, 371
Bsp143I GATC 2 cut(s) 132, 235
BspANI GGCC 2 cut(s) 328, 371
BspCNI CTCAG 1 cut(s) 400
BspMI ACCTGC 1 cut(s) 72
BspPI GGATC 1 cut(s) 230
BsrDI GCAATG 1 cut(s) 300
BsrI ACTGG 1 cut(s) 428
BssECI CCNNGG 1 cut(s) 372
BssMI GATC 2 cut(s) 132, 235
Bst4CI ACNGT 2 cut(s) 227, 384
BstC8I GCNNGC 2 cut(s) 207, 301
BstDEI CTNAG 2 cut(s) 387, 475
BstDSI CCRYGG 1 cut(s) 372
BstENI CCTNNNNNAGG 1 cut(s) 478
BstHHI GCGC 1 cut(s) 211
BstKTI GATC 2 cut(s) 135, 238
BstMAI GTCTC 3 cut(s) 312, 390, 447
BstMBI GATC 2 cut(s) 132, 235
BstNSI RCATGY 1 cut(s) 303
BstXI CCANNNNNNTGG 1 cut(s) 194
BsuRI GGCC 2 cut(s) 328, 371
BtgI CCRYGG 1 cut(s) 372
BveI ACCTGC 1 cut(s) 72
Cac8I GCNNGC 2 cut(s) 207, 301
CaiI CAGNNNCTG 1 cut(s) 346
CfoI GCGC 1 cut(s) 211
Csp6I GTAC 2 cut(s) 67, 344
CviAII CATG 4 cut(s) 46, 202, 300, 367
CviJI RGCY 5 cut(s) 55, 111, 186, 328, 371
CviKI_1 RGCY 5 cut(s) 55, 111, 186, 328, 371
CviQI GTAC 2 cut(s) 67, 344
DdeI CTNAG 2 cut(s) 387, 475
DpnI GATC 2 cut(s) 134, 237
DpnII GATC 2 cut(s) 132, 235
EaeI YGGCCR 1 cut(s) 369
Eco57I CTGAAG 2 cut(s) 46, 377
EcoNI CCTNNNNNAGG 1 cut(s) 478
FaeI CATG 4 cut(s) 49, 205, 303, 370
FalI AAGNNNNNCTT 2 cut(s) 88, 120
FaqI GGGAC 1 cut(s) 456
FatI CATG 4 cut(s) 45, 201, 299, 366
FblI GTMKAC 1 cut(s) 145
FspBI CTAG 1 cut(s) 15
FspI TGCGCA 1 cut(s) 210
GlaI GCGC 1 cut(s) 210
HaeIII GGCC 2 cut(s) 328, 371
HhaI GCGC 1 cut(s) 211
Hin1II CATG 4 cut(s) 49, 205, 303, 370
Hin6I GCGC 1 cut(s) 209
HinP1I GCGC 1 cut(s) 209
HincII GTYRAC 2 cut(s) 146, 265
HindII GTYRAC 2 cut(s) 146, 265
HinfI GANTC 3 cut(s) 175, 337, 452
HphI GGTGA 1 cut(s) 227
Hpy166II GTNNAC 2 cut(s) 146, 265
Hpy188I TCNGA 3 cut(s) 240, 390, 461
Hpy188III TCNNGA 1 cut(s) 274
Hpy8I GTNNAC 2 cut(s) 146, 265
HpyAV CCTTC 1 cut(s) 352
HpyCH4III ACNGT 2 cut(s) 227, 384
HpyCH4IV ACGT 2 cut(s) 6, 469
HpyCH4V TGCA 1 cut(s) 366
HpyF3I CTNAG 2 cut(s) 387, 475
HpySE526I ACGT 2 cut(s) 6, 469
Hsp92II CATG 4 cut(s) 49, 205, 303, 370
HspAI GCGC 1 cut(s) 209
Kzo9I GATC 2 cut(s) 132, 235
LpnPI CCDG 7 cut(s) 49, 67, 144, 162, 259, 326, 441
MaeI CTAG 1 cut(s) 15
MaeII ACGT 2 cut(s) 6, 469
MaeIII GTNAC 1 cut(s) 215
MalI GATC 2 cut(s) 134, 237
MboI GATC 2 cut(s) 132, 235
MboII GAAGA 1 cut(s) 389
MlsI TGGCCA 1 cut(s) 371
MluCI AATT 3 cut(s) 21, 253, 416
MluNI TGGCCA 1 cut(s) 371
MlyI GAGTC 1 cut(s) 346
MmeI TCCRAC 1 cut(s) 108
MnlI CCTC 3 cut(s) 33, 165, 484
Mox20I TGGCCA 1 cut(s) 371
MscI TGGCCA 1 cut(s) 371
MseI TTAA 3 cut(s) 24, 86, 222
Msp20I TGGCCA 1 cut(s) 371
Mva1269I GAATGC 1 cut(s) 468
NdeII GATC 2 cut(s) 132, 235
NlaIII CATG 4 cut(s) 49, 205, 303, 370
NmuCI GTSAC 1 cut(s) 215
NsbI TGCGCA 1 cut(s) 210
NspI RCATGY 1 cut(s) 303
PaeI GCATGC 1 cut(s) 303
PctI GAATGC 1 cut(s) 468
PfeI GAWTC 2 cut(s) 175, 452
PleI GAGTC 1 cut(s) 345
PpsI GAGTC 1 cut(s) 345
PshBI ATTAAT 1 cut(s) 24
PsiI TTATAA 1 cut(s) 155
PstNI CAGNNNCTG 1 cut(s) 346
RsaI GTAC 2 cut(s) 68, 345
RsaNI GTAC 2 cut(s) 67, 344
SalI GTCGAC 1 cut(s) 144
SaqAI TTAA 3 cut(s) 24, 86, 222
Sau3AI GATC 2 cut(s) 132, 235
SchI GAGTC 1 cut(s) 346
SetI ASST 9 cut(s) 9, 68, 86, 113, 151, 217, 345, 472, 485
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
SphI GCATGC 1 cut(s) 303
Sse9I AATT 3 cut(s) 21, 253, 416
SspMI CTAG 1 cut(s) 15
TaaI ACNGT 2 cut(s) 227, 384
TaiI ACGT 2 cut(s) 9, 472
TaqI TCGA 1 cut(s) 145
TasI AATT 3 cut(s) 21, 253, 416
TfiI GAWTC 2 cut(s) 175, 452
Tru1I TTAA 3 cut(s) 24, 86, 222
Tru9I TTAA 3 cut(s) 24, 86, 222
TseFI GTSAC 1 cut(s) 215
Tsp45I GTSAC 1 cut(s) 215
TspDTI ATGAA 2 cut(s) 190, 423
TspGWI ACGGA 1 cut(s) 389
VspI ATTAAT 1 cut(s) 24
XagI CCTNNNNNAGG 1 cut(s) 478
XapI RAATTY 1 cut(s) 253
XceI RCATGY 1 cut(s) 303
XmiI GTMKAC 1 cut(s) 145
XspI CTAG 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.