RchiOBHm_Chr5g0036491

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
30683797 .. 30688967
5171 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31530

Sequence Viewer

Length: 873 bp
ATGGTATCATATTATATATATATGCACTTTGCAGAAGTTGAAGAGTACAGCGCCAGCTGGTCTAGAGAGCTCACTATTACCATGAATGGAAAGCTTATTTCTACGTTTGATCCACATTACTTGAGGACAACAACGACTAACACCACGTTTACTGCGGAAGGAGGAAAGTATTATTTTTCAATATCTACTCCGGGGACAACGTATCAACCGATCCTGAACGCCTTTGAGATTTATATGGCAAAAGAATTTTTAGTATCAGAAACAAACCAGCAAGACGCAATTACGAACCTCAAGTCAACTTATAAAATCATTAAGAATTGGCAAGGAGATCCGTGCAACCCTCAAGTTTACCTGTGGGAAGGTGTGAAGTGCAGCTATTCTGACAATGACTCCGCACGAATCATATCCCTGGATTTGTCACAGAGTGGACTAACCGGAGAGATAGCTGCTTCTATAGCTAATCTCACAATGATACAGACTTTGGATTTATCAAACAACAACTTATCCAGACAAATTCCAGAATATTTGTCGCAGTTGCCAAAGTTAAATGTCTTAAACTTGGAGAACAATGAGCTCACAGGTTCAGTTCTTGCCGGGCTTATAGCAAAAGGAAAGGATGGTTTGTCATTGAGTTTGTGCGGAAATCCAAGTTTATCAAAGCAGGTTCCTTGCGAGAAGAAGAAGAACAAGTTTTCTGTTCCGGTCGTCGTGTCAATTATTGTAATGTTGTTGGTCTCATCCATTGCAGCAGCTATATTGTGGAAATTAAAAAAGGGTCATGGTAAACTCCAAAAATTTATGCTAGTTACCAAAATTGCAAGATTTACTGATGTCCGACTTTTGGGATATACACTATACATCCTAACAATGTGA

Protein Analysis

290

Amino Acids

32.38

Weight (kDa)

8.69

Isoelectric Point (pI)

29.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 3 - 79 5.5e-15 Malectin-like domain
LRR_8 PF13855 136 - 192 2.3e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000083)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07560 AT1G51790 AT1G51790 AT1G51790 AT1G51800 AT1G51805 AT1G51805 AT1G51810 AT1G51820 AT1G51820 AT1G51830 AT1G51830 AT1G51840 AT1G51840 AT1G51840 AT1G51840 AT1G51840 AT1G51850 AT1G51850 AT1G51860 AT1G51860 AT1G51870 AT1G51870 AT1G51880 AT1G51880 AT1G51880 AT1G51890 AT1G51890 AT1G51890 AT1G51890 AT1G51890 AT1G51910 AT2G04300 AT2G04300 AT2G28960 AT2G28960 AT2G28970 AT2G28970 AT2G28990 AT2G28990 AT2G29000 AT3G21340 AT3G46350 AT5G59616 AT5G59650 AT5G59650 AT5G59660 AT5G59660 AT5G59660 AT5G59670 AT5G59670 AT5G59680
fragaria_vesca FvH4_2g03270 FvH4_3g21300 FvH4_6g32660 FvH4_6g32660 FvH4_6g32670 FvH4_6g32670 FvH4_6g32690 FvH4_6g32690 FvH4_6g32691 FvH4_6g32700 FvH4_6g32740 FvH4_6g32750 FvH4_6g33210 FvH4_6g33210 FvH4_7g24270 FvH4_7g24280 FvH4_7g24291 FvH4_7g24300
malus_domestica MD09G1198400.v1.1 MD09G1198600.v1.1 MD09G1199100.v1.1 MD09G1199200.v1.1 MD09G1199300.v1.1 MD09G1199500.v1.1 MD09G1199600.v1.1 MD17G1179300.v1.1 MD17G1180200.v1.1 MD17G1266000.v1.1
prunus_persica Prupe.1G438900_v2.0.a1 Prupe.1G439000_v2.0.a1 Prupe.1G439100_v2.0.a1 Prupe.3G019400_v2.0.a1 Prupe.3G021900_v2.0.a1 Prupe.3G054500_v2.0.a1 Prupe.3G054500_v2.0.a1 Prupe.3G055100_v2.0.a1 Prupe.3G055400_v2.0.a1 Prupe.3G055500_v2.0.a1 Prupe.3G055600_v2.0.a1 Prupe.3G055700_v2.0.a1 Prupe.3G055800_v2.0.a1 Prupe.3G055900_v2.0.a1 Prupe.3G055900_v2.0.a1 Prupe.3G056000_v2.0.a1 Prupe.3G056000_v2.0.a1 Prupe.3G056100_v2.0.a1 Prupe.3G209600_v2.0.a1 Prupe.3G209700_v2.0.a1 Prupe.6G291100_v2.0.a1 Prupe.7G208900_v2.0.a1 Prupe.8G038300_v2.0.a1
pyrus_communis pycom09g11570 pycom09g11580 pycom09g11610 pycom09g11630 pycom09g11640 pycom17g18840 pycom17g18910 pycom17g18930 pycom17g18940
rosa_chinensis RchiOBHm_Chr1g0317521 RchiOBHm_Chr1g0317541 RchiOBHm_Chr2g0123351 RchiOBHm_Chr2g0141181 RchiOBHm_Chr2g0141191 RchiOBHm_Chr2g0141211 RchiOBHm_Chr2g0141221 RchiOBHm_Chr2g0141261 RchiOBHm_Chr2g0141271 RchiOBHm_Chr2g0141311 RchiOBHm_Chr2g0141331 RchiOBHm_Chr2g0141371 RchiOBHm_Chr2g0141391 RchiOBHm_Chr2g0141401 RchiOBHm_Chr2g0141431 RchiOBHm_Chr2g0141481 RchiOBHm_Chr2g0141491 RchiOBHm_Chr2g0141591 RchiOBHm_Chr2g0141601 RchiOBHm_Chr2g0141611 RchiOBHm_Chr2g0141631 RchiOBHm_Chr2g0141641 RchiOBHm_Chr2g0141661 RchiOBHm_Chr2g0141681 RchiOBHm_Chr2g0141701 RchiOBHm_Chr2g0141781 RchiOBHm_Chr2g0141811 RchiOBHm_Chr2g0141821 RchiOBHm_Chr3g0479311 RchiOBHm_Chr3g0495751 RchiOBHm_Chr4g0404741 RchiOBHm_Chr4g0410341 RchiOBHm_Chr4g0418371 RchiOBHm_Chr4g0438651 RchiOBHm_Chr5g0036411 RchiOBHm_Chr5g0036491 RchiOBHm_Chr5g0042391 RchiOBHm_Chr6g0279871 RchiOBHm_Chr7g0192921 RchiOBHm_Chr7g0214901 RchiOBHm_Chr7g0234931
rosa_laevigata RLG00000003432 RLG00000008806 RLG00000013062 RLG00000019514 RLG00000019923 RLG00000019924 RLG00000019925 RLG00000019930 RLG00000019931 RLG00000019934 RLG00000019937 RLG00000019938 RLG00000033697
rosa_multiflora Rmu_co8002302.1_g000001 Rmu_sc0000147.1_g000031 Rmu_sc0000463.1_g000005 Rmu_sc0000712.1_g000003 Rmu_sc0001483.1_g000017 Rmu_sc0001554.1_g000002 Rmu_sc0001554.1_g000005 Rmu_sc0001554.1_g000008 Rmu_sc0001981.1_g000017 Rmu_sc0002040.1_g000056 Rmu_sc0002755.1_g000018 Rmu_sc0002804.1_g000016 Rmu_sc0002928.1_g000015 Rmu_sc0003040.1_g000008 Rmu_sc0003040.1_g000018 Rmu_sc0004512.1_g000001 Rmu_sc0004512.1_g000004 Rmu_sc0005507.1_g000001 Rmu_sc0005507.1_g000009 Rmu_sc0005507.1_g000033 Rmu_sc0005507.1_g000037 Rmu_sc0005507.1_g000043 Rmu_sc0005507.1_g000047 Rmu_sc0006318.1_g000004 Rmu_sc0006318.1_g000014 Rmu_sc0006318.1_g000021 Rmu_sc0006556.1_g000001 Rmu_sc0007208.1_g000002 Rmu_sc0007208.1_g000003 Rmu_sc0007208.1_g000006 Rmu_sc0007208.1_g000008
rosa_roxburghii Rroxscaffold_1G00044430 Rroxscaffold_2G00103420 Rroxscaffold_2G00103470 Rroxscaffold_2G00103490 Rroxscaffold_2G00103500 Rroxscaffold_2G00103520 Rroxscaffold_2G00103530 Rroxscaffold_2G00103540 Rroxscaffold_2G00103550 Rroxscaffold_2G00103570 Rroxscaffold_2G00103770 Rroxscaffold_2G00103780 Rroxscaffold_2G00103800 Rroxscaffold_2G00103820 Rroxscaffold_2G00103860 Rroxscaffold_2G00103890 Rroxscaffold_2G00103930 Rroxscaffold_2G00103940 Rroxscaffold_2G00104010 Rroxscaffold_2G00104030 Rroxscaffold_2G00104050 Rroxscaffold_2G00104060 Rroxscaffold_2G00104070 Rroxscaffold_2G00104090 Rroxscaffold_2G00104100 Rroxscaffold_2G00104120 Rroxscaffold_2G00104130 Rroxscaffold_4G00331710
rosa_rugosa Rorug02G0367500 Rorug02G0367500 Rorug02G0367600 Rorug02G0367800 Rorug02G0367800 Rorug02G0367900 Rorug02G0368100 Rorug02G0368100 Rorug02G0368100 Rorug02G0368200 Rorug02G0368700 Rorug02G0368900 Rorug05G0155600 Rorug05G0155700 Rorug05G0155800 Rorug05G0156700 Rorug05G0157300
rosa_samantha Rh1AG028000 Rh2AG418700 Rh2AG418900 Rh2AG419000 Rh2AG419100 Rh2AG419400 Rh2AG419600 Rh2AG419800 Rh2AG420400 Rh2AG421000 Rh2BG428500 Rh2BG428600 Rh2BG428800 Rh2BG428900 Rh2BG429300 Rh2BG429400 Rh2BG429700 Rh2BG429900 Rh2BG430000 Rh2BG430700 Rh2CG405100 Rh2CG405200 Rh2CG405300 Rh2CG405500 Rh2CG405600 Rh2CG405700 Rh2CG406000 Rh2CG406100 Rh2CG406300 Rh2CG406600 Rh2CG406700 Rh2CG407500 Rh2CG408100 Rh2DG438500 Rh3DG123900 Rh3DG124000 Rh5BG249700 Rh5BG482500 Rh5CG281500 Rh5CG507300 Rh7DG133300
rosa_wichuraiana Rw0G019720 Rw0G019730 Rw0G019750 Rw0G023010 Rw2G034340 Rw2G034350 Rw2G034370 Rw2G034380 Rw2G034400 Rw2G034430 Rw2G034470 Rw2G034480 Rw2G034510 Rw5G022890 Rw5G026410 Rw5G032710 Rw5G042850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 303
Acc36I ACCTGC 1 cut(s) 652
AciI CCGC 3 cut(s) 155, 393, 639
AclWI GGATC 3 cut(s) 104, 205, 323
AcsI RAATTY 3 cut(s) 245, 513, 794
AdeI CACNNNGTG 1 cut(s) 425
AfaI GTAC 1 cut(s) 47
AfiI CCNNNNNNNGG 1 cut(s) 841
AgsI TTSAA 2 cut(s) 41, 180
AjnI CCWGG 1 cut(s) 408
AluBI AGCT 8 cut(s) 57, 70, 94, 375, 446, 458, 574, 752
AluI AGCT 8 cut(s) 57, 70, 94, 375, 446, 458, 574, 752
Alw21I GWGCWC 2 cut(s) 72, 576
Alw26I GTCTC 1 cut(s) 739
AlwI GGATC 3 cut(s) 104, 205, 323
ApeKI GCWGC 4 cut(s) 372, 446, 746, 749
ApoI RAATTY 3 cut(s) 245, 513, 794
ArsI GACNNNNNNTTYG 2 cut(s) 278, 310
AspLEI GCGC 1 cut(s) 53
AsuC2I CCSGG 2 cut(s) 192, 595
BanII GRGCYC 2 cut(s) 72, 576
Bbv12I GWGCWC 2 cut(s) 72, 576
BbvI GCAGC 4 cut(s) 384, 433, 758, 761
BccI CCATC 1 cut(s) 611
BciT130I CCWGG 1 cut(s) 410
BcnI CCSGG 2 cut(s) 192, 595
BcoDI GTCTC 1 cut(s) 739
BfaI CTAG 2 cut(s) 63, 803
BfmI CTRYAG 1 cut(s) 453
BfoI RGCGCY 1 cut(s) 54
BfuAI ACCTGC 1 cut(s) 652
BisI GCNGC 4 cut(s) 373, 447, 747, 750
BlsI GCNGC 4 cut(s) 374, 448, 748, 751
Bme1390I CCNGG 3 cut(s) 192, 410, 595
BmiI GGNNCC 1 cut(s) 666
BmrFI CCNGG 3 cut(s) 192, 410, 595
BpuEI CTTGAG 3 cut(s) 142, 275, 327
BpuMI CCSGG 2 cut(s) 192, 595
BsaI GGTCTC 1 cut(s) 739
BsaJI CCNNGG 2 cut(s) 191, 408
BsaWI WCCGGW 2 cut(s) 434, 700
BsaXI ACNNNNNCTCC 2 cut(s) 374, 404
Bsc4I CCNNNNNNNGG 1 cut(s) 841
Bse3DI GCAATG 1 cut(s) 741
BseBI CCWGG 1 cut(s) 410
BseDI CCNNGG 2 cut(s) 191, 408
BseGI GGATG 3 cut(s) 622, 737, 858
BseLI CCNNNNNNNGG 1 cut(s) 841
BseMI GCAATG 1 cut(s) 741
BseXI GCAGC 4 cut(s) 384, 433, 758, 761
BsgI GTGCAG 1 cut(s) 391
Bsh1285I CGRYCG 1 cut(s) 705
BsiEI CGRYCG 1 cut(s) 705
BsiHKAI GWGCWC 2 cut(s) 72, 576
BsiSI CCGG 4 cut(s) 191, 435, 594, 701
BslFI GGGAC 1 cut(s) 208
BslI CCNNNNNNNGG 1 cut(s) 841
BsmAI GTCTC 1 cut(s) 739
BsmFI GGGAC 1 cut(s) 208
Bso31I GGTCTC 1 cut(s) 739
Bsp1286I GDGCHC 2 cut(s) 72, 576
Bsp143I GATC 3 cut(s) 109, 210, 328
BspACI CCGC 3 cut(s) 155, 393, 639
BspLI GGNNCC 1 cut(s) 666
BspMI ACCTGC 1 cut(s) 652
BspPI GGATC 3 cut(s) 104, 205, 323
BspTNI GGTCTC 1 cut(s) 739
BsrDI GCAATG 1 cut(s) 741
BssECI CCNNGG 2 cut(s) 191, 408
BssMI GATC 3 cut(s) 109, 210, 328
Bst2UI CCWGG 1 cut(s) 410
Bst6I CTCTTC 1 cut(s) 36
BstC8I GCNNGC 1 cut(s) 55
BstF5I GGATG 3 cut(s) 622, 737, 858
BstH2I RGCGCY 1 cut(s) 54
BstHHI GCGC 1 cut(s) 53
BstKTI GATC 3 cut(s) 112, 213, 331
BstMAI GTCTC 1 cut(s) 739
BstMBI GATC 3 cut(s) 109, 210, 328
BstMCI CGRYCG 1 cut(s) 705
BstMWI GCNNNNNNNGC 1 cut(s) 455
BstNI CCWGG 1 cut(s) 410
BstSCI CCNGG 3 cut(s) 190, 408, 593
BstSFI CTRYAG 1 cut(s) 453
BstV1I GCAGC 4 cut(s) 384, 433, 758, 761
BstX2I RGATCY 1 cut(s) 328
BstYI RGATCY 1 cut(s) 328
BtsCI GGATG 3 cut(s) 622, 737, 858
BveI ACCTGC 1 cut(s) 652
Cac8I GCNNGC 1 cut(s) 55
CfoI GCGC 1 cut(s) 53
CseI GACGC 1 cut(s) 284
Csp6I GTAC 1 cut(s) 46
CspCI CAANNNNNGTGG 2 cut(s) 102, 137
CviAII CATG 2 cut(s) 82, 779
CviJI RGCY 9 cut(s) 57, 70, 94, 375, 446, 458, 574, 598, 752
CviKI_1 RGCY 9 cut(s) 57, 70, 94, 375, 446, 458, 574, 598, 752
CviQI GTAC 1 cut(s) 46
DpnI GATC 3 cut(s) 111, 212, 330
DpnII GATC 3 cut(s) 109, 210, 328
DraIII CACNNNGTG 1 cut(s) 425
Eam1104I CTCTTC 1 cut(s) 36
EarI CTCTTC 1 cut(s) 36
Ecl136II GAGCTC 2 cut(s) 70, 574
Eco24I GRGCYC 2 cut(s) 72, 576
Eco31I GGTCTC 1 cut(s) 739
Eco53kI GAGCTC 2 cut(s) 70, 574
EcoICRI GAGCTC 2 cut(s) 70, 574
EcoRII CCWGG 1 cut(s) 408
EcoT38I GRGCYC 2 cut(s) 72, 576
FaeI CATG 2 cut(s) 85, 782
FaqI GGGAC 1 cut(s) 208
FatI CATG 2 cut(s) 81, 778
Fnu4HI GCNGC 4 cut(s) 373, 447, 747, 750
FokI GGATG 3 cut(s) 629, 724, 845
FriOI GRGCYC 2 cut(s) 72, 576
Fsp4HI GCNGC 4 cut(s) 373, 447, 747, 750
FspBI CTAG 2 cut(s) 63, 803
GlaI GCGC 1 cut(s) 52
GluI GCNGC 4 cut(s) 373, 447, 747, 750
HaeII RGCGCY 1 cut(s) 54
HapII CCGG 4 cut(s) 191, 435, 594, 701
HgaI GACGC 1 cut(s) 284
HhaI GCGC 1 cut(s) 53
Hin1II CATG 2 cut(s) 85, 782
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HincII GTYRAC 1 cut(s) 297
HindII GTYRAC 1 cut(s) 297
HindIII AAGCTT 1 cut(s) 92
HinfI GANTC 2 cut(s) 389, 399
HpaII CCGG 4 cut(s) 191, 435, 594, 701
Hpy166II GTNNAC 5 cut(s) 150, 297, 349, 428, 785
Hpy188I TCNGA 3 cut(s) 259, 382, 836
Hpy188III TCNNGA 4 cut(s) 63, 214, 507, 518
Hpy8I GTNNAC 5 cut(s) 150, 297, 349, 428, 785
Hpy99I CGWCG 1 cut(s) 710
HpyAV CCTTC 2 cut(s) 152, 353
HpyCH4IV ACGT 3 cut(s) 104, 146, 200
HpyCH4V TGCA 6 cut(s) 25, 32, 336, 372, 746, 818
HpyF10VI GCNNNNNNNGC 1 cut(s) 455
HpySE526I ACGT 3 cut(s) 104, 146, 200
Hsp92II CATG 2 cut(s) 85, 782
HspAI GCGC 1 cut(s) 51
Kzo9I GATC 3 cut(s) 109, 210, 328
Lsp1109I GCAGC 4 cut(s) 384, 433, 758, 761
MaeI CTAG 2 cut(s) 63, 803
MaeII ACGT 3 cut(s) 104, 146, 200
MaeIII GTNAC 2 cut(s) 417, 805
MalI GATC 3 cut(s) 111, 212, 330
MboI GATC 3 cut(s) 109, 210, 328
MboII GAAGA 4 cut(s) 53, 688, 691, 694
MflI RGATCY 1 cut(s) 328
MhlI GDGCHC 2 cut(s) 72, 576
MluCI AATT 8 cut(s) 245, 279, 316, 513, 714, 764, 794, 813
MlyI GAGTC 1 cut(s) 383
MmeI TCCRAC 1 cut(s) 859
MnlI CCTC 4 cut(s) 117, 155, 299, 351
MseI TTAA 4 cut(s) 312, 545, 554, 767
MspA1I CMGCKG 1 cut(s) 57
MspI CCGG 4 cut(s) 191, 435, 594, 701
MspR9I CCNGG 3 cut(s) 192, 410, 595
MvaI CCWGG 1 cut(s) 410
MwoI GCNNNNNNNGC 1 cut(s) 455
NciI CCSGG 2 cut(s) 192, 595
NdeII GATC 3 cut(s) 109, 210, 328
NlaIII CATG 2 cut(s) 85, 782
NlaIV GGNNCC 1 cut(s) 666
NmuCI GTSAC 1 cut(s) 417
PcsI WCGNNNNNNNCGW 1 cut(s) 206
PfeI GAWTC 1 cut(s) 399
PkrI GCNGC 4 cut(s) 374, 448, 748, 751
PleI GAGTC 1 cut(s) 383
PpsI GAGTC 1 cut(s) 383
PsiI TTATAA 1 cut(s) 303
Psp124BI GAGCTC 2 cut(s) 72, 576
Psp6I CCWGG 1 cut(s) 408
PspGI CCWGG 1 cut(s) 408
PspN4I GGNNCC 1 cut(s) 666
PsuI RGATCY 1 cut(s) 328
PvuII CAGCTG 1 cut(s) 57
RsaI GTAC 1 cut(s) 47
RsaNI GTAC 1 cut(s) 46
SacI GAGCTC 2 cut(s) 72, 576
SaqAI TTAA 4 cut(s) 312, 545, 554, 767
SatI GCNGC 4 cut(s) 373, 447, 747, 750
Sau3AI GATC 3 cut(s) 109, 210, 328
SchI GAGTC 1 cut(s) 383
ScrFI CCNGG 3 cut(s) 192, 410, 595
SduI GDGCHC 2 cut(s) 72, 576
SfcI CTRYAG 1 cut(s) 453
SmlI CTYRAG 3 cut(s) 121, 290, 342
SmoI CTYRAG 3 cut(s) 121, 290, 342
Sse9I AATT 8 cut(s) 245, 279, 316, 513, 714, 764, 794, 813
SsiI CCGC 3 cut(s) 155, 393, 639
SspI AATATT 1 cut(s) 524
SspMI CTAG 2 cut(s) 63, 803
SstI GAGCTC 2 cut(s) 72, 576
StyD4I CCNGG 3 cut(s) 190, 408, 593
TaiI ACGT 3 cut(s) 107, 149, 203
TasI AATT 8 cut(s) 245, 279, 316, 513, 714, 764, 794, 813
TatI WGTACW 1 cut(s) 45
TfiI GAWTC 1 cut(s) 399
Tru1I TTAA 4 cut(s) 312, 545, 554, 767
Tru9I TTAA 4 cut(s) 312, 545, 554, 767
TseFI GTSAC 1 cut(s) 417
TseI GCWGC 4 cut(s) 372, 446, 746, 749
Tsp45I GTSAC 1 cut(s) 417
TspDTI ATGAA 1 cut(s) 98
TspGWI ACGGA 1 cut(s) 321
XapI RAATTY 3 cut(s) 245, 513, 794
XbaI TCTAGA 1 cut(s) 62
XspI CTAG 2 cut(s) 63, 803
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.