Rh3DG123900

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Forward (+)
10497679 .. 10498170
492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG123900.1

Sequence Viewer

Length: 492 bp
ATGAACTCTAGTACTCCCATGTATATCGGTTGGAATCCACCAGATACAACTTCTGAATACTATGTGTACATGCACTTTGCTGAAATCCAGAAGTTGAAAGCCAACGAGTCCAGATCCTTCAATATCACCCTGAATGACAAACTTTTTTATGGACCTCTAGTGCCAAGTTACTTGAGTACAATTACTATTTACAGCCCAGCAGCGTTAACAGGAGGAAATTTTACATTCTCACTCTTCAAAACTGAGAATTCAACACTGCCACCGATCCTCAATGCCATGGAGTACTTCAGAGTCATAGATTTCTTGCTTTTATATATGTTCATTTTTAGAGGCATCACCATGCTTTTAACTGACTGCTTTAACTTAGCTAGCTGTCAACATGATTCACTCATAAGTTGCTTGAAACTTGCTATTAGGGACTTGTCCTCGAGCGGCTTGACAGGAGAGATAACTTCATATATATCCAATCTTGACATGTTACAATCTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

163

Amino Acids

18.44

Weight (kDa)

4.97

Isoelectric Point (pI)

51.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 2 - 98 4.4e-28 Malectin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000083)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07560 AT1G51790 AT1G51790 AT1G51790 AT1G51800 AT1G51805 AT1G51805 AT1G51810 AT1G51820 AT1G51820 AT1G51830 AT1G51830 AT1G51840 AT1G51840 AT1G51840 AT1G51840 AT1G51840 AT1G51850 AT1G51850 AT1G51860 AT1G51860 AT1G51870 AT1G51870 AT1G51880 AT1G51880 AT1G51880 AT1G51890 AT1G51890 AT1G51890 AT1G51890 AT1G51890 AT1G51910 AT2G04300 AT2G04300 AT2G28960 AT2G28960 AT2G28970 AT2G28970 AT2G28990 AT2G28990 AT2G29000 AT3G21340 AT3G46350 AT5G59616 AT5G59650 AT5G59650 AT5G59660 AT5G59660 AT5G59660 AT5G59670 AT5G59670 AT5G59680
fragaria_vesca FvH4_2g03270 FvH4_3g21300 FvH4_6g32660 FvH4_6g32660 FvH4_6g32670 FvH4_6g32670 FvH4_6g32690 FvH4_6g32690 FvH4_6g32691 FvH4_6g32700 FvH4_6g32740 FvH4_6g32750 FvH4_6g33210 FvH4_6g33210 FvH4_7g24270 FvH4_7g24280 FvH4_7g24291 FvH4_7g24300
malus_domestica MD09G1198400.v1.1 MD09G1198600.v1.1 MD09G1199100.v1.1 MD09G1199200.v1.1 MD09G1199300.v1.1 MD09G1199500.v1.1 MD09G1199600.v1.1 MD17G1179300.v1.1 MD17G1180200.v1.1 MD17G1266000.v1.1
prunus_persica Prupe.1G438900_v2.0.a1 Prupe.1G439000_v2.0.a1 Prupe.1G439100_v2.0.a1 Prupe.3G019400_v2.0.a1 Prupe.3G021900_v2.0.a1 Prupe.3G054500_v2.0.a1 Prupe.3G054500_v2.0.a1 Prupe.3G055100_v2.0.a1 Prupe.3G055400_v2.0.a1 Prupe.3G055500_v2.0.a1 Prupe.3G055600_v2.0.a1 Prupe.3G055700_v2.0.a1 Prupe.3G055800_v2.0.a1 Prupe.3G055900_v2.0.a1 Prupe.3G055900_v2.0.a1 Prupe.3G056000_v2.0.a1 Prupe.3G056000_v2.0.a1 Prupe.3G056100_v2.0.a1 Prupe.3G209600_v2.0.a1 Prupe.3G209700_v2.0.a1 Prupe.6G291100_v2.0.a1 Prupe.7G208900_v2.0.a1 Prupe.8G038300_v2.0.a1
pyrus_communis pycom09g11570 pycom09g11580 pycom09g11610 pycom09g11630 pycom09g11640 pycom17g18840 pycom17g18910 pycom17g18930 pycom17g18940
rosa_chinensis RchiOBHm_Chr1g0317521 RchiOBHm_Chr1g0317541 RchiOBHm_Chr2g0123351 RchiOBHm_Chr2g0141181 RchiOBHm_Chr2g0141191 RchiOBHm_Chr2g0141211 RchiOBHm_Chr2g0141221 RchiOBHm_Chr2g0141261 RchiOBHm_Chr2g0141271 RchiOBHm_Chr2g0141311 RchiOBHm_Chr2g0141331 RchiOBHm_Chr2g0141371 RchiOBHm_Chr2g0141391 RchiOBHm_Chr2g0141401 RchiOBHm_Chr2g0141431 RchiOBHm_Chr2g0141481 RchiOBHm_Chr2g0141491 RchiOBHm_Chr2g0141591 RchiOBHm_Chr2g0141601 RchiOBHm_Chr2g0141611 RchiOBHm_Chr2g0141631 RchiOBHm_Chr2g0141641 RchiOBHm_Chr2g0141661 RchiOBHm_Chr2g0141681 RchiOBHm_Chr2g0141701 RchiOBHm_Chr2g0141781 RchiOBHm_Chr2g0141811 RchiOBHm_Chr2g0141821 RchiOBHm_Chr3g0479311 RchiOBHm_Chr3g0495751 RchiOBHm_Chr4g0404741 RchiOBHm_Chr4g0410341 RchiOBHm_Chr4g0418371 RchiOBHm_Chr4g0438651 RchiOBHm_Chr5g0036411 RchiOBHm_Chr5g0036491 RchiOBHm_Chr5g0042391 RchiOBHm_Chr6g0279871 RchiOBHm_Chr7g0192921 RchiOBHm_Chr7g0214901 RchiOBHm_Chr7g0234931
rosa_laevigata RLG00000003432 RLG00000008806 RLG00000013062 RLG00000019514 RLG00000019923 RLG00000019924 RLG00000019925 RLG00000019930 RLG00000019931 RLG00000019934 RLG00000019937 RLG00000019938 RLG00000033697
rosa_multiflora Rmu_co8002302.1_g000001 Rmu_sc0000147.1_g000031 Rmu_sc0000463.1_g000005 Rmu_sc0000712.1_g000003 Rmu_sc0001483.1_g000017 Rmu_sc0001554.1_g000002 Rmu_sc0001554.1_g000005 Rmu_sc0001554.1_g000008 Rmu_sc0001981.1_g000017 Rmu_sc0002040.1_g000056 Rmu_sc0002755.1_g000018 Rmu_sc0002804.1_g000016 Rmu_sc0002928.1_g000015 Rmu_sc0003040.1_g000008 Rmu_sc0003040.1_g000018 Rmu_sc0004512.1_g000001 Rmu_sc0004512.1_g000004 Rmu_sc0005507.1_g000001 Rmu_sc0005507.1_g000009 Rmu_sc0005507.1_g000033 Rmu_sc0005507.1_g000037 Rmu_sc0005507.1_g000043 Rmu_sc0005507.1_g000047 Rmu_sc0006318.1_g000004 Rmu_sc0006318.1_g000014 Rmu_sc0006318.1_g000021 Rmu_sc0006556.1_g000001 Rmu_sc0007208.1_g000002 Rmu_sc0007208.1_g000003 Rmu_sc0007208.1_g000006 Rmu_sc0007208.1_g000008
rosa_roxburghii Rroxscaffold_1G00044430 Rroxscaffold_2G00103420 Rroxscaffold_2G00103470 Rroxscaffold_2G00103490 Rroxscaffold_2G00103500 Rroxscaffold_2G00103520 Rroxscaffold_2G00103530 Rroxscaffold_2G00103540 Rroxscaffold_2G00103550 Rroxscaffold_2G00103570 Rroxscaffold_2G00103770 Rroxscaffold_2G00103780 Rroxscaffold_2G00103800 Rroxscaffold_2G00103820 Rroxscaffold_2G00103860 Rroxscaffold_2G00103890 Rroxscaffold_2G00103930 Rroxscaffold_2G00103940 Rroxscaffold_2G00104010 Rroxscaffold_2G00104030 Rroxscaffold_2G00104050 Rroxscaffold_2G00104060 Rroxscaffold_2G00104070 Rroxscaffold_2G00104090 Rroxscaffold_2G00104100 Rroxscaffold_2G00104120 Rroxscaffold_2G00104130 Rroxscaffold_4G00331710
rosa_rugosa Rorug02G0367500 Rorug02G0367500 Rorug02G0367600 Rorug02G0367800 Rorug02G0367800 Rorug02G0367900 Rorug02G0368100 Rorug02G0368100 Rorug02G0368100 Rorug02G0368200 Rorug02G0368700 Rorug02G0368900 Rorug05G0155600 Rorug05G0155700 Rorug05G0155800 Rorug05G0156700 Rorug05G0157300
rosa_samantha Rh1AG028000 Rh2AG418700 Rh2AG418900 Rh2AG419000 Rh2AG419100 Rh2AG419400 Rh2AG419600 Rh2AG419800 Rh2AG420400 Rh2AG421000 Rh2BG428500 Rh2BG428600 Rh2BG428800 Rh2BG428900 Rh2BG429300 Rh2BG429400 Rh2BG429700 Rh2BG429900 Rh2BG430000 Rh2BG430700 Rh2CG405100 Rh2CG405200 Rh2CG405300 Rh2CG405500 Rh2CG405600 Rh2CG405700 Rh2CG406000 Rh2CG406100 Rh2CG406300 Rh2CG406600 Rh2CG406700 Rh2CG407500 Rh2CG408100 Rh2DG438500 Rh3DG123900 Rh3DG124000 Rh5BG249700 Rh5BG482500 Rh5CG281500 Rh5CG507300 Rh7DG133300
rosa_wichuraiana Rw0G019720 Rw0G019730 Rw0G019750 Rw0G023010 Rw2G034340 Rw2G034350 Rw2G034370 Rw2G034380 Rw2G034400 Rw2G034430 Rw2G034470 Rw2G034480 Rw2G034510 Rw5G022890 Rw5G026410 Rw5G032710 Rw5G042850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 432
AciI CCGC 1 cut(s) 432
AclWI GGATC 2 cut(s) 108, 259
AcsI RAATTY 2 cut(s) 217, 247
AcuI CTGAAG 1 cut(s) 271
AfaI GTAC 4 cut(s) 13, 68, 178, 284
AflIII ACRYGT 1 cut(s) 474
AgsI TTSAA 5 cut(s) 97, 121, 238, 252, 403
AluBI AGCT 2 cut(s) 368, 372
AluI AGCT 2 cut(s) 368, 372
AlwI GGATC 2 cut(s) 108, 259
Ama87I CYCGRG 1 cut(s) 427
ApeKI GCWGC 1 cut(s) 200
ApoI RAATTY 2 cut(s) 217, 247
AspS9I GGNCC 1 cut(s) 152
AsuHPI GGTGA 2 cut(s) 118, 328
AsuNHI GCTAGC 1 cut(s) 368
AvaI CYCGRG 1 cut(s) 427
AvaII GGWCC 1 cut(s) 152
BbvI GCAGC 1 cut(s) 212
BfaI CTAG 3 cut(s) 9, 158, 369
BisI GCNGC 2 cut(s) 201, 433
BlsI GCNGC 2 cut(s) 202, 434
BmcAI AGTACT 2 cut(s) 13, 284
Bme18I GGWCC 1 cut(s) 152
BmeT110I CYCGRG 1 cut(s) 427
BmgT120I GGNCC 1 cut(s) 152
BmsI GCATC 1 cut(s) 342
BmtI GCTAGC 1 cut(s) 372
BpuEI CTTGAG 1 cut(s) 193
BsaJI CCNNGG 1 cut(s) 276
BseDI CCNNGG 1 cut(s) 276
BseMII CTCAG 1 cut(s) 234
BseXI GCAGC 1 cut(s) 212
BseYI CCCAGC 1 cut(s) 196
BsiHKCI CYCGRG 1 cut(s) 427
BslFI GGGAC 1 cut(s) 431
BsmFI GGGAC 1 cut(s) 431
BsoBI CYCGRG 1 cut(s) 427
Bsp1407I TGTACA 1 cut(s) 66
Bsp143I GATC 2 cut(s) 113, 264
Bsp19I CCATGG 1 cut(s) 276
BspACI CCGC 1 cut(s) 432
BspCNI CTCAG 1 cut(s) 235
BspOI GCTAGC 1 cut(s) 372
BspPI GGATC 2 cut(s) 108, 259
BsrBI CCGCTC 1 cut(s) 432
BsrGI TGTACA 1 cut(s) 66
BssECI CCNNGG 1 cut(s) 276
BssMI GATC 2 cut(s) 113, 264
BssT1I CCWWGG 1 cut(s) 276
Bst6I CTCTTC 1 cut(s) 239
BstAUI TGTACA 1 cut(s) 66
BstC8I GCNNGC 1 cut(s) 370
BstDEI CTNAG 2 cut(s) 243, 364
BstDSI CCRYGG 1 cut(s) 276
BstKTI GATC 2 cut(s) 116, 267
BstMBI GATC 2 cut(s) 113, 264
BstNSI RCATGY 2 cut(s) 73, 478
BstV1I GCAGC 1 cut(s) 212
BstX2I RGATCY 1 cut(s) 113
BstYI RGATCY 1 cut(s) 113
BtgI CCRYGG 1 cut(s) 276
BtsI GCAGTG 1 cut(s) 254
BtsIMutI CAGTG 1 cut(s) 254
Cac8I GCNNGC 1 cut(s) 370
Cfr13I GGNCC 1 cut(s) 152
Csp6I GTAC 4 cut(s) 12, 67, 177, 283
CviAII CATG 6 cut(s) 19, 70, 277, 340, 380, 475
CviJI RGCY 5 cut(s) 101, 195, 368, 372, 435
CviKI_1 RGCY 5 cut(s) 101, 195, 368, 372, 435
CviQI GTAC 4 cut(s) 12, 67, 177, 283
DdeI CTNAG 2 cut(s) 243, 364
DpnI GATC 2 cut(s) 115, 266
DpnII GATC 2 cut(s) 113, 264
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
Eco130I CCWWGG 1 cut(s) 276
Eco47I GGWCC 1 cut(s) 152
Eco57I CTGAAG 1 cut(s) 271
Eco88I CYCGRG 1 cut(s) 427
EcoRI GAATTC 1 cut(s) 247
EcoT14I CCWWGG 1 cut(s) 276
ErhI CCWWGG 1 cut(s) 276
FaeI CATG 6 cut(s) 22, 73, 280, 343, 383, 478
FaqI GGGAC 1 cut(s) 431
FatI CATG 6 cut(s) 18, 69, 276, 339, 379, 474
Fnu4HI GCNGC 2 cut(s) 201, 433
Fsp4HI GCNGC 2 cut(s) 201, 433
FspBI CTAG 3 cut(s) 9, 158, 369
GluI GCNGC 2 cut(s) 201, 433
GsaI CCCAGC 1 cut(s) 200
Hin1II CATG 6 cut(s) 22, 73, 280, 343, 383, 478
HincII GTYRAC 2 cut(s) 207, 377
HindII GTYRAC 2 cut(s) 207, 377
HinfI GANTC 4 cut(s) 34, 107, 291, 383
HpaI GTTAAC 1 cut(s) 207
HphI GGTGA 2 cut(s) 118, 328
Hpy166II GTNNAC 3 cut(s) 67, 207, 377
Hpy188I TCNGA 2 cut(s) 55, 290
Hpy188III TCNNGA 3 cut(s) 88, 111, 470
Hpy8I GTNNAC 3 cut(s) 67, 207, 377
HpyAV CCTTC 1 cut(s) 127
HpyCH4V TGCA 1 cut(s) 73
HpyF3I CTNAG 2 cut(s) 243, 364
Hsp92II CATG 6 cut(s) 22, 73, 280, 343, 383, 478
KspAI GTTAAC 1 cut(s) 207
Kzo9I GATC 2 cut(s) 113, 264
LpnPI CCDG 7 cut(s) 54, 101, 124, 143, 195, 210, 426
Lsp1109I GCAGC 1 cut(s) 212
LweI GCATC 1 cut(s) 342
MaeI CTAG 3 cut(s) 9, 158, 369
MaeIII GTNAC 2 cut(s) 167, 477
MalI GATC 2 cut(s) 115, 266
MbiI CCGCTC 1 cut(s) 432
MboI GATC 2 cut(s) 113, 264
MboII GAAGA 1 cut(s) 226
MflI RGATCY 1 cut(s) 113
MluCI AATT 3 cut(s) 180, 217, 247
MlyI GAGTC 2 cut(s) 116, 300
MmeI TCCRAC 1 cut(s) 11
MnlI CCTC 5 cut(s) 165, 206, 278, 323, 436
MseI TTAA 3 cut(s) 206, 347, 360
MslI CAYNNNNRTG 1 cut(s) 338
NcoI CCATGG 1 cut(s) 276
NdeII GATC 2 cut(s) 113, 264
NheI GCTAGC 1 cut(s) 368
NlaIII CATG 6 cut(s) 22, 73, 280, 343, 383, 478
NspI RCATGY 2 cut(s) 73, 478
PaeR7I CTCGAG 1 cut(s) 427
PciI ACATGT 1 cut(s) 474
PfeI GAWTC 2 cut(s) 34, 383
PkrI GCNGC 2 cut(s) 202, 434
PleI GAGTC 2 cut(s) 115, 299
PpsI GAGTC 2 cut(s) 115, 299
PscI ACATGT 1 cut(s) 474
PspFI CCCAGC 1 cut(s) 196
PspPI GGNCC 1 cut(s) 152
PspXI VCTCGAGB 1 cut(s) 427
PsuI RGATCY 1 cut(s) 113
RsaI GTAC 4 cut(s) 13, 68, 178, 284
RsaNI GTAC 4 cut(s) 12, 67, 177, 283
RseI CAYNNNNRTG 1 cut(s) 338
SaqAI TTAA 3 cut(s) 206, 347, 360
SatI GCNGC 2 cut(s) 201, 433
Sau3AI GATC 2 cut(s) 113, 264
Sau96I GGNCC 1 cut(s) 152
ScaI AGTACT 2 cut(s) 13, 284
SchI GAGTC 2 cut(s) 116, 300
SetI ASST 3 cut(s) 157, 370, 374
SfaNI GCATC 1 cut(s) 342
Sfr274I CTCGAG 1 cut(s) 427
SinI GGWCC 1 cut(s) 152
SlaI CTCGAG 1 cut(s) 427
SmiMI CAYNNNNRTG 1 cut(s) 338
SmlI CTYRAG 2 cut(s) 172, 427
SmoI CTYRAG 2 cut(s) 172, 427
Sse9I AATT 3 cut(s) 180, 217, 247
SsiI CCGC 1 cut(s) 432
SspMI CTAG 3 cut(s) 9, 158, 369
StyI CCWWGG 1 cut(s) 276
TaqI TCGA 1 cut(s) 428
TasI AATT 3 cut(s) 180, 217, 247
TatI WGTACW 4 cut(s) 11, 66, 176, 282
TauI GCSGC 1 cut(s) 435
TfiI GAWTC 2 cut(s) 34, 383
Tru1I TTAA 3 cut(s) 206, 347, 360
Tru9I TTAA 3 cut(s) 206, 347, 360
TscAI CASTG 1 cut(s) 261
TseI GCWGC 1 cut(s) 200
TspDTI ATGAA 3 cut(s) 17, 310, 444
TspRI CASTG 1 cut(s) 261
VpaK11BI GGWCC 1 cut(s) 152
XapI RAATTY 2 cut(s) 217, 247
XceI RCATGY 2 cut(s) 73, 478
XhoI CTCGAG 1 cut(s) 427
XspI CTAG 3 cut(s) 9, 158, 369
ZrmI AGTACT 2 cut(s) 13, 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.