MD09G1199600.v1.1

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Forward (+)
18297604 .. 18299029
1426 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1199600.v1.1.491

Sequence Viewer

Length: 645 bp
ATGCTTATGAAAAATGTTATGATTGTAGGAAATAGCACAGATGCAAATGTAACCATTCAGCATGGGTCATTTGAGCCTAAAGGGAGACAGTTTACGTACTCTGATATAGCACAGATTACAAAGGGGTTCAAGAGGGTTCTTGGAAAAGGCGGCTTTGGAACAGTTTATCACGGCCACATTGACGACACTCAGGTGGCTGTCAAGATGCTTTCACCGCCATCAGTTCAAGGGTTTCAGCAATTTCTCACAGAGGCATGTAGCAGATCAAATATCTTGAGTTGGAGAGATAGACTTCAAATAGCAATAGAAGTTGCACAAGGACTGGAGTATCTGCACTATGGCTGCAGTCCGCCTATAATCCACAGGGATGTGAAATCAACAAACATCTTGCTGAATGAAAAATTCGAAGCCAAACTCTCTGATTTTGGCATATCCAGAAGTTTCCCTACAGAGGATGGAACGCATATAACAAAAAATGTCGCTGGCACTCCCGGGTATTACGCATCAAAGAGATTGAATAAAGAAAGTGATGTTTATAGCTTTGGGATTGTACTGTTGGAGATTATCACAAGTCGACCTGTTTTTTCTAGAACTCATGAGCGGAGTTGCATTAGTGAATGGTTCAGTTTCATGCTTCAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

215

Amino Acids

24.05

Weight (kDa)

8.94

Isoelectric Point (pI)

53.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 82 - 201 1.7e-23 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 89 - 190 3.8e-20 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000083)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07560 AT1G51790 AT1G51790 AT1G51790 AT1G51800 AT1G51805 AT1G51805 AT1G51810 AT1G51820 AT1G51820 AT1G51830 AT1G51830 AT1G51840 AT1G51840 AT1G51840 AT1G51840 AT1G51840 AT1G51850 AT1G51850 AT1G51860 AT1G51860 AT1G51870 AT1G51870 AT1G51880 AT1G51880 AT1G51880 AT1G51890 AT1G51890 AT1G51890 AT1G51890 AT1G51890 AT1G51910 AT2G04300 AT2G04300 AT2G28960 AT2G28960 AT2G28970 AT2G28970 AT2G28990 AT2G28990 AT2G29000 AT3G21340 AT3G46350 AT5G59616 AT5G59650 AT5G59650 AT5G59660 AT5G59660 AT5G59660 AT5G59670 AT5G59670 AT5G59680
fragaria_vesca FvH4_2g03270 FvH4_3g21300 FvH4_6g32660 FvH4_6g32660 FvH4_6g32670 FvH4_6g32670 FvH4_6g32690 FvH4_6g32690 FvH4_6g32691 FvH4_6g32700 FvH4_6g32740 FvH4_6g32750 FvH4_6g33210 FvH4_6g33210 FvH4_7g24270 FvH4_7g24280 FvH4_7g24291 FvH4_7g24300
malus_domestica MD09G1198400.v1.1 MD09G1198600.v1.1 MD09G1199100.v1.1 MD09G1199200.v1.1 MD09G1199300.v1.1 MD09G1199500.v1.1 MD09G1199600.v1.1 MD17G1179300.v1.1 MD17G1180200.v1.1 MD17G1266000.v1.1
prunus_persica Prupe.1G438900_v2.0.a1 Prupe.1G439000_v2.0.a1 Prupe.1G439100_v2.0.a1 Prupe.3G019400_v2.0.a1 Prupe.3G021900_v2.0.a1 Prupe.3G054500_v2.0.a1 Prupe.3G054500_v2.0.a1 Prupe.3G055100_v2.0.a1 Prupe.3G055400_v2.0.a1 Prupe.3G055500_v2.0.a1 Prupe.3G055600_v2.0.a1 Prupe.3G055700_v2.0.a1 Prupe.3G055800_v2.0.a1 Prupe.3G055900_v2.0.a1 Prupe.3G055900_v2.0.a1 Prupe.3G056000_v2.0.a1 Prupe.3G056000_v2.0.a1 Prupe.3G056100_v2.0.a1 Prupe.3G209600_v2.0.a1 Prupe.3G209700_v2.0.a1 Prupe.6G291100_v2.0.a1 Prupe.7G208900_v2.0.a1 Prupe.8G038300_v2.0.a1
pyrus_communis pycom09g11570 pycom09g11580 pycom09g11610 pycom09g11630 pycom09g11640 pycom17g18840 pycom17g18910 pycom17g18930 pycom17g18940
rosa_chinensis RchiOBHm_Chr1g0317521 RchiOBHm_Chr1g0317541 RchiOBHm_Chr2g0123351 RchiOBHm_Chr2g0141181 RchiOBHm_Chr2g0141191 RchiOBHm_Chr2g0141211 RchiOBHm_Chr2g0141221 RchiOBHm_Chr2g0141261 RchiOBHm_Chr2g0141271 RchiOBHm_Chr2g0141311 RchiOBHm_Chr2g0141331 RchiOBHm_Chr2g0141371 RchiOBHm_Chr2g0141391 RchiOBHm_Chr2g0141401 RchiOBHm_Chr2g0141431 RchiOBHm_Chr2g0141481 RchiOBHm_Chr2g0141491 RchiOBHm_Chr2g0141591 RchiOBHm_Chr2g0141601 RchiOBHm_Chr2g0141611 RchiOBHm_Chr2g0141631 RchiOBHm_Chr2g0141641 RchiOBHm_Chr2g0141661 RchiOBHm_Chr2g0141681 RchiOBHm_Chr2g0141701 RchiOBHm_Chr2g0141781 RchiOBHm_Chr2g0141811 RchiOBHm_Chr2g0141821 RchiOBHm_Chr3g0479311 RchiOBHm_Chr3g0495751 RchiOBHm_Chr4g0404741 RchiOBHm_Chr4g0410341 RchiOBHm_Chr4g0418371 RchiOBHm_Chr4g0438651 RchiOBHm_Chr5g0036411 RchiOBHm_Chr5g0036491 RchiOBHm_Chr5g0042391 RchiOBHm_Chr6g0279871 RchiOBHm_Chr7g0192921 RchiOBHm_Chr7g0214901 RchiOBHm_Chr7g0234931
rosa_laevigata RLG00000003432 RLG00000008806 RLG00000013062 RLG00000019514 RLG00000019923 RLG00000019924 RLG00000019925 RLG00000019930 RLG00000019931 RLG00000019934 RLG00000019937 RLG00000019938 RLG00000033697
rosa_multiflora Rmu_co8002302.1_g000001 Rmu_sc0000147.1_g000031 Rmu_sc0000463.1_g000005 Rmu_sc0000712.1_g000003 Rmu_sc0001483.1_g000017 Rmu_sc0001554.1_g000002 Rmu_sc0001554.1_g000005 Rmu_sc0001554.1_g000008 Rmu_sc0001981.1_g000017 Rmu_sc0002040.1_g000056 Rmu_sc0002755.1_g000018 Rmu_sc0002804.1_g000016 Rmu_sc0002928.1_g000015 Rmu_sc0003040.1_g000008 Rmu_sc0003040.1_g000018 Rmu_sc0004512.1_g000001 Rmu_sc0004512.1_g000004 Rmu_sc0005507.1_g000001 Rmu_sc0005507.1_g000009 Rmu_sc0005507.1_g000033 Rmu_sc0005507.1_g000037 Rmu_sc0005507.1_g000043 Rmu_sc0005507.1_g000047 Rmu_sc0006318.1_g000004 Rmu_sc0006318.1_g000014 Rmu_sc0006318.1_g000021 Rmu_sc0006556.1_g000001 Rmu_sc0007208.1_g000002 Rmu_sc0007208.1_g000003 Rmu_sc0007208.1_g000006 Rmu_sc0007208.1_g000008
rosa_roxburghii Rroxscaffold_1G00044430 Rroxscaffold_2G00103420 Rroxscaffold_2G00103470 Rroxscaffold_2G00103490 Rroxscaffold_2G00103500 Rroxscaffold_2G00103520 Rroxscaffold_2G00103530 Rroxscaffold_2G00103540 Rroxscaffold_2G00103550 Rroxscaffold_2G00103570 Rroxscaffold_2G00103770 Rroxscaffold_2G00103780 Rroxscaffold_2G00103800 Rroxscaffold_2G00103820 Rroxscaffold_2G00103860 Rroxscaffold_2G00103890 Rroxscaffold_2G00103930 Rroxscaffold_2G00103940 Rroxscaffold_2G00104010 Rroxscaffold_2G00104030 Rroxscaffold_2G00104050 Rroxscaffold_2G00104060 Rroxscaffold_2G00104070 Rroxscaffold_2G00104090 Rroxscaffold_2G00104100 Rroxscaffold_2G00104120 Rroxscaffold_2G00104130 Rroxscaffold_4G00331710
rosa_rugosa Rorug02G0367500 Rorug02G0367500 Rorug02G0367600 Rorug02G0367800 Rorug02G0367800 Rorug02G0367900 Rorug02G0368100 Rorug02G0368100 Rorug02G0368100 Rorug02G0368200 Rorug02G0368700 Rorug02G0368900 Rorug05G0155600 Rorug05G0155700 Rorug05G0155800 Rorug05G0156700 Rorug05G0157300
rosa_samantha Rh1AG028000 Rh2AG418700 Rh2AG418900 Rh2AG419000 Rh2AG419100 Rh2AG419400 Rh2AG419600 Rh2AG419800 Rh2AG420400 Rh2AG421000 Rh2BG428500 Rh2BG428600 Rh2BG428800 Rh2BG428900 Rh2BG429300 Rh2BG429400 Rh2BG429700 Rh2BG429900 Rh2BG430000 Rh2BG430700 Rh2CG405100 Rh2CG405200 Rh2CG405300 Rh2CG405500 Rh2CG405600 Rh2CG405700 Rh2CG406000 Rh2CG406100 Rh2CG406300 Rh2CG406600 Rh2CG406700 Rh2CG407500 Rh2CG408100 Rh2DG438500 Rh3DG123900 Rh3DG124000 Rh5BG249700 Rh5BG482500 Rh5CG281500 Rh5CG507300 Rh7DG133300
rosa_wichuraiana Rw0G019720 Rw0G019730 Rw0G019750 Rw0G023010 Rw2G034340 Rw2G034350 Rw2G034370 Rw2G034380 Rw2G034400 Rw2G034430 Rw2G034470 Rw2G034480 Rw2G034510 Rw5G022890 Rw5G026410 Rw5G032710 Rw5G042850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 601
AccI GTMKAC 1 cut(s) 574
AciI CCGC 4 cut(s) 150, 215, 350, 601
AcoI YGGCCR 1 cut(s) 172
AcsI RAATTY 1 cut(s) 401
AfaI GTAC 2 cut(s) 98, 552
AfiI CCNNNNNNNGG 1 cut(s) 451
AgsI TTSAA 5 cut(s) 130, 227, 296, 517, 638
AleI CACNNNNGTG 1 cut(s) 191
AluBI AGCT 1 cut(s) 540
AluI AGCT 1 cut(s) 540
Alw26I GTCTC 1 cut(s) 79
Ama87I CYCGRG 1 cut(s) 491
AoxI GGCC 1 cut(s) 172
ApeKI GCWGC 1 cut(s) 342
ApoI RAATTY 1 cut(s) 401
AsuC2I CCSGG 2 cut(s) 492, 493
AsuHPI GGTGA 1 cut(s) 204
AsuII TTCGAA 1 cut(s) 405
AvaI CYCGRG 1 cut(s) 491
BaeI ACNNNNGTAYC 2 cut(s) 311, 344
BarI GAAGNNNNNNTAC 2 cut(s) 430, 462
BbvI GCAGC 1 cut(s) 329
BccI CCATC 2 cut(s) 226, 449
BceAI ACGGC 1 cut(s) 187
BcnI CCSGG 2 cut(s) 492, 493
BcoDI GTCTC 1 cut(s) 79
BfaI CTAG 1 cut(s) 588
BfmI CTRYAG 2 cut(s) 343, 447
BisI GCNGC 2 cut(s) 151, 343
BlsI GCNGC 2 cut(s) 152, 344
Bme1390I CCNGG 2 cut(s) 492, 493
BmeT110I CYCGRG 1 cut(s) 491
BmrFI CCNGG 2 cut(s) 492, 493
BmsI GCATC 3 cut(s) 31, 195, 512
BpmI CTGGAG 1 cut(s) 344
Bpu14I TTCGAA 1 cut(s) 405
BpuEI CTTGAG 1 cut(s) 295
BpuMI CCSGG 2 cut(s) 492, 493
BsaAI YACGTR 1 cut(s) 96
BsaJI CCNNGG 1 cut(s) 491
Bsc4I CCNNNNNNNGG 1 cut(s) 451
Bse1I ACTGG 1 cut(s) 327
BseDI CCNNGG 1 cut(s) 491
BseGI GGATG 2 cut(s) 373, 460
BseLI CCNNNNNNNGG 1 cut(s) 451
BseMII CTCAG 1 cut(s) 203
BseNI ACTGG 1 cut(s) 327
BseXI GCAGC 1 cut(s) 329
BsgI GTGCAG 1 cut(s) 317
BshFI GGCC 1 cut(s) 174
BsiHKCI CYCGRG 1 cut(s) 491
BsiSI CCGG 1 cut(s) 492
BslI CCNNNNNNNGG 1 cut(s) 451
BsmAI GTCTC 1 cut(s) 79
BsnI GGCC 1 cut(s) 174
BsoBI CYCGRG 1 cut(s) 491
Bsp119I TTCGAA 1 cut(s) 405
Bsp143I GATC 1 cut(s) 263
BspACI CCGC 4 cut(s) 150, 215, 350, 601
BspANI GGCC 1 cut(s) 174
BspCNI CTCAG 1 cut(s) 202
BspHI TCATGA 1 cut(s) 595
BspMAI CTGCAG 1 cut(s) 347
BspT104I TTCGAA 1 cut(s) 405
BsrBI CCGCTC 1 cut(s) 601
BsrI ACTGG 1 cut(s) 327
BssECI CCNNGG 1 cut(s) 491
BssMI GATC 1 cut(s) 263
Bst4CI ACNGT 3 cut(s) 90, 163, 555
BstBAI YACGTR 1 cut(s) 96
BstBI TTCGAA 1 cut(s) 405
BstC8I GCNNGC 1 cut(s) 484
BstDEI CTNAG 1 cut(s) 189
BstF5I GGATG 2 cut(s) 373, 460
BstKTI GATC 1 cut(s) 266
BstMAI GTCTC 1 cut(s) 79
BstMBI GATC 1 cut(s) 263
BstMWI GCNNNNNNNGC 1 cut(s) 214
BstNSI RCATGY 1 cut(s) 258
BstSCI CCNGG 2 cut(s) 490, 491
BstSFI CTRYAG 2 cut(s) 343, 447
BstSNI TACGTA 1 cut(s) 96
BstV1I GCAGC 1 cut(s) 329
BsuRI GGCC 1 cut(s) 174
BtsCI GGATG 2 cut(s) 373, 460
Cac8I GCNNGC 1 cut(s) 484
CciI TCATGA 1 cut(s) 595
Cfr9I CCCGGG 1 cut(s) 491
Csp6I GTAC 2 cut(s) 97, 551
CviAII CATG 4 cut(s) 62, 255, 596, 631
CviJI RGCY 7 cut(s) 76, 153, 174, 197, 342, 410, 540
CviKI_1 RGCY 7 cut(s) 76, 153, 174, 197, 342, 410, 540
CviQI GTAC 2 cut(s) 97, 551
DdeI CTNAG 1 cut(s) 189
DpnI GATC 1 cut(s) 265
DpnII GATC 1 cut(s) 263
EaeI YGGCCR 1 cut(s) 172
EciI GGCGGA 1 cut(s) 339
Eco105I TACGTA 1 cut(s) 96
Eco88I CYCGRG 1 cut(s) 491
FaeI CATG 4 cut(s) 65, 258, 599, 634
FatI CATG 4 cut(s) 61, 254, 595, 630
FblI GTMKAC 1 cut(s) 574
Fnu4HI GCNGC 2 cut(s) 151, 343
FokI GGATG 2 cut(s) 380, 467
Fsp4HI GCNGC 2 cut(s) 151, 343
FspBI CTAG 1 cut(s) 588
GluI GCNGC 2 cut(s) 151, 343
GsuI CTGGAG 1 cut(s) 344
HaeIII GGCC 1 cut(s) 174
HapII CCGG 1 cut(s) 492
Hin1II CATG 4 cut(s) 65, 258, 599, 634
HincII GTYRAC 1 cut(s) 575
HindII GTYRAC 1 cut(s) 575
HpaII CCGG 1 cut(s) 492
HphI GGTGA 1 cut(s) 204
Hpy166II GTNNAC 2 cut(s) 93, 575
Hpy188I TCNGA 2 cut(s) 103, 421
Hpy188III TCNNGA 6 cut(s) 130, 202, 274, 435, 588, 596
Hpy8I GTNNAC 2 cut(s) 93, 575
HpyCH4III ACNGT 3 cut(s) 90, 163, 555
HpyCH4IV ACGT 1 cut(s) 95
HpyCH4V TGCA 5 cut(s) 44, 314, 334, 345, 609
HpyF10VI GCNNNNNNNGC 1 cut(s) 214
HpyF3I CTNAG 1 cut(s) 189
HpySE526I ACGT 1 cut(s) 95
Hsp92II CATG 4 cut(s) 65, 258, 599, 634
Kzo9I GATC 1 cut(s) 263
LpnPI CCDG 7 cut(s) 176, 308, 349, 448, 468, 505, 591
Lsp1109I GCAGC 1 cut(s) 329
LweI GCATC 3 cut(s) 31, 195, 512
MaeI CTAG 1 cut(s) 588
MaeII ACGT 1 cut(s) 95
MaeIII GTNAC 1 cut(s) 49
MalI GATC 1 cut(s) 265
MbiI CCGCTC 1 cut(s) 601
MboI GATC 1 cut(s) 263
MluCI AATT 2 cut(s) 239, 401
MmeI TCCRAC 2 cut(s) 260, 537
MnlI CCTC 3 cut(s) 126, 244, 445
MslI CAYNNNNRTG 2 cut(s) 191, 366
MspI CCGG 1 cut(s) 492
MspR9I CCNGG 2 cut(s) 492, 493
MwoI GCNNNNNNNGC 1 cut(s) 214
NciI CCSGG 2 cut(s) 492, 493
NdeII GATC 1 cut(s) 263
NlaIII CATG 4 cut(s) 65, 258, 599, 634
NspI RCATGY 1 cut(s) 258
NspV TTCGAA 1 cut(s) 405
OliI CACNNNNGTG 1 cut(s) 191
PagI TCATGA 1 cut(s) 595
PkrI GCNGC 2 cut(s) 152, 344
Ppu21I YACGTR 1 cut(s) 96
PstI CTGCAG 1 cut(s) 347
RsaI GTAC 2 cut(s) 98, 552
RsaNI GTAC 2 cut(s) 97, 551
RseI CAYNNNNRTG 2 cut(s) 191, 366
SalI GTCGAC 1 cut(s) 573
SatI GCNGC 2 cut(s) 151, 343
Sau3AI GATC 1 cut(s) 263
ScrFI CCNGG 2 cut(s) 492, 493
SetI ASST 4 cut(s) 98, 195, 542, 580
SfaNI GCATC 3 cut(s) 31, 195, 512
SfcI CTRYAG 2 cut(s) 343, 447
SfuI TTCGAA 1 cut(s) 405
SmaI CCCGGG 1 cut(s) 493
SmiMI CAYNNNNRTG 2 cut(s) 191, 366
SmlI CTYRAG 1 cut(s) 274
SmoI CTYRAG 1 cut(s) 274
SnaBI TACGTA 1 cut(s) 96
Sse9I AATT 2 cut(s) 239, 401
SsiI CCGC 4 cut(s) 150, 215, 350, 601
SspMI CTAG 1 cut(s) 588
StyD4I CCNGG 2 cut(s) 490, 491
TaaI ACNGT 3 cut(s) 90, 163, 555
TaiI ACGT 1 cut(s) 98
TaqI TCGA 2 cut(s) 405, 574
TasI AATT 2 cut(s) 239, 401
TatI WGTACW 1 cut(s) 550
TauI GCSGC 1 cut(s) 153
TseI GCWGC 1 cut(s) 342
TspDTI ATGAA 3 cut(s) 23, 411, 619
TspMI CCCGGG 1 cut(s) 491
XapI RAATTY 1 cut(s) 401
XbaI TCTAGA 1 cut(s) 587
XceI RCATGY 1 cut(s) 258
XmaI CCCGGG 1 cut(s) 491
XmiI GTMKAC 1 cut(s) 574
XspI CTAG 1 cut(s) 588
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.