Rh2BG430700

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Reverse (-)
61012174 .. 61015570
3397 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG430700.1

Sequence Viewer

Length: 528 bp
ATGGAGTACTTCAGAGTCATAGATTTCTCACAGTCGGAAACTAATCAAGACGATGTGGTTGCAATCACAAACATAAAGTCAACATATGGAGTTGTGAAAAATTGGCAGGGAGATCCATGTGGTCCACAAGAGTACGTCTGGGAAGGTCTAAACTGTAGCTCGGACGATCCCCCAAGAATCACATCCTTGGACTTGTCCTCGAGCGGATTGACAGGAGAAATAACTTCATATATATCCAATCTTGACATGTTACAATCTTTGGATTTATCTAACAATAGCGTAACTGGATCAGTACCTGAGTTTCTGTCTAAATTGCCAAACCTGAAAGTCCTTAACTTGGAAAAGAACAAGCTGAATGGTTCACTTCCAAGTACGCTTATCGAAAAATCGACAAGTGGATCACTATCCTTAAGCTTGTTGAGAGTTGGGATGAATGGGGCAAGGGGGGAGCTCCTTTCTAGGTGCCCTGCACTTGAAATATTGGAATCAAGTTACTGCAAAAACATAAAACATGCATGTTCAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

175

Amino Acids

19.01

Weight (kDa)

4.77

Isoelectric Point (pI)

40.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 58 - 118 7.6e-09 Leucine rich repeat
LRR_4 PF12799 84 - 119 9e-08 Leucine Rich repeats (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000083)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07560 AT1G51790 AT1G51790 AT1G51790 AT1G51800 AT1G51805 AT1G51805 AT1G51810 AT1G51820 AT1G51820 AT1G51830 AT1G51830 AT1G51840 AT1G51840 AT1G51840 AT1G51840 AT1G51840 AT1G51850 AT1G51850 AT1G51860 AT1G51860 AT1G51870 AT1G51870 AT1G51880 AT1G51880 AT1G51880 AT1G51890 AT1G51890 AT1G51890 AT1G51890 AT1G51890 AT1G51910 AT2G04300 AT2G04300 AT2G28960 AT2G28960 AT2G28970 AT2G28970 AT2G28990 AT2G28990 AT2G29000 AT3G21340 AT3G46350 AT5G59616 AT5G59650 AT5G59650 AT5G59660 AT5G59660 AT5G59660 AT5G59670 AT5G59670 AT5G59680
fragaria_vesca FvH4_2g03270 FvH4_3g21300 FvH4_6g32660 FvH4_6g32660 FvH4_6g32670 FvH4_6g32670 FvH4_6g32690 FvH4_6g32690 FvH4_6g32691 FvH4_6g32700 FvH4_6g32740 FvH4_6g32750 FvH4_6g33210 FvH4_6g33210 FvH4_7g24270 FvH4_7g24280 FvH4_7g24291 FvH4_7g24300
malus_domestica MD09G1198400.v1.1 MD09G1198600.v1.1 MD09G1199100.v1.1 MD09G1199200.v1.1 MD09G1199300.v1.1 MD09G1199500.v1.1 MD09G1199600.v1.1 MD17G1179300.v1.1 MD17G1180200.v1.1 MD17G1266000.v1.1
prunus_persica Prupe.1G438900_v2.0.a1 Prupe.1G439000_v2.0.a1 Prupe.1G439100_v2.0.a1 Prupe.3G019400_v2.0.a1 Prupe.3G021900_v2.0.a1 Prupe.3G054500_v2.0.a1 Prupe.3G054500_v2.0.a1 Prupe.3G055100_v2.0.a1 Prupe.3G055400_v2.0.a1 Prupe.3G055500_v2.0.a1 Prupe.3G055600_v2.0.a1 Prupe.3G055700_v2.0.a1 Prupe.3G055800_v2.0.a1 Prupe.3G055900_v2.0.a1 Prupe.3G055900_v2.0.a1 Prupe.3G056000_v2.0.a1 Prupe.3G056000_v2.0.a1 Prupe.3G056100_v2.0.a1 Prupe.3G209600_v2.0.a1 Prupe.3G209700_v2.0.a1 Prupe.6G291100_v2.0.a1 Prupe.7G208900_v2.0.a1 Prupe.8G038300_v2.0.a1
pyrus_communis pycom09g11570 pycom09g11580 pycom09g11610 pycom09g11630 pycom09g11640 pycom17g18840 pycom17g18910 pycom17g18930 pycom17g18940
rosa_chinensis RchiOBHm_Chr1g0317521 RchiOBHm_Chr1g0317541 RchiOBHm_Chr2g0123351 RchiOBHm_Chr2g0141181 RchiOBHm_Chr2g0141191 RchiOBHm_Chr2g0141211 RchiOBHm_Chr2g0141221 RchiOBHm_Chr2g0141261 RchiOBHm_Chr2g0141271 RchiOBHm_Chr2g0141311 RchiOBHm_Chr2g0141331 RchiOBHm_Chr2g0141371 RchiOBHm_Chr2g0141391 RchiOBHm_Chr2g0141401 RchiOBHm_Chr2g0141431 RchiOBHm_Chr2g0141481 RchiOBHm_Chr2g0141491 RchiOBHm_Chr2g0141591 RchiOBHm_Chr2g0141601 RchiOBHm_Chr2g0141611 RchiOBHm_Chr2g0141631 RchiOBHm_Chr2g0141641 RchiOBHm_Chr2g0141661 RchiOBHm_Chr2g0141681 RchiOBHm_Chr2g0141701 RchiOBHm_Chr2g0141781 RchiOBHm_Chr2g0141811 RchiOBHm_Chr2g0141821 RchiOBHm_Chr3g0479311 RchiOBHm_Chr3g0495751 RchiOBHm_Chr4g0404741 RchiOBHm_Chr4g0410341 RchiOBHm_Chr4g0418371 RchiOBHm_Chr4g0438651 RchiOBHm_Chr5g0036411 RchiOBHm_Chr5g0036491 RchiOBHm_Chr5g0042391 RchiOBHm_Chr6g0279871 RchiOBHm_Chr7g0192921 RchiOBHm_Chr7g0214901 RchiOBHm_Chr7g0234931
rosa_laevigata RLG00000003432 RLG00000008806 RLG00000013062 RLG00000019514 RLG00000019923 RLG00000019924 RLG00000019925 RLG00000019930 RLG00000019931 RLG00000019934 RLG00000019937 RLG00000019938 RLG00000033697
rosa_multiflora Rmu_co8002302.1_g000001 Rmu_sc0000147.1_g000031 Rmu_sc0000463.1_g000005 Rmu_sc0000712.1_g000003 Rmu_sc0001483.1_g000017 Rmu_sc0001554.1_g000002 Rmu_sc0001554.1_g000005 Rmu_sc0001554.1_g000008 Rmu_sc0001981.1_g000017 Rmu_sc0002040.1_g000056 Rmu_sc0002755.1_g000018 Rmu_sc0002804.1_g000016 Rmu_sc0002928.1_g000015 Rmu_sc0003040.1_g000008 Rmu_sc0003040.1_g000018 Rmu_sc0004512.1_g000001 Rmu_sc0004512.1_g000004 Rmu_sc0005507.1_g000001 Rmu_sc0005507.1_g000009 Rmu_sc0005507.1_g000033 Rmu_sc0005507.1_g000037 Rmu_sc0005507.1_g000043 Rmu_sc0005507.1_g000047 Rmu_sc0006318.1_g000004 Rmu_sc0006318.1_g000014 Rmu_sc0006318.1_g000021 Rmu_sc0006556.1_g000001 Rmu_sc0007208.1_g000002 Rmu_sc0007208.1_g000003 Rmu_sc0007208.1_g000006 Rmu_sc0007208.1_g000008
rosa_roxburghii Rroxscaffold_1G00044430 Rroxscaffold_2G00103420 Rroxscaffold_2G00103470 Rroxscaffold_2G00103490 Rroxscaffold_2G00103500 Rroxscaffold_2G00103520 Rroxscaffold_2G00103530 Rroxscaffold_2G00103540 Rroxscaffold_2G00103550 Rroxscaffold_2G00103570 Rroxscaffold_2G00103770 Rroxscaffold_2G00103780 Rroxscaffold_2G00103800 Rroxscaffold_2G00103820 Rroxscaffold_2G00103860 Rroxscaffold_2G00103890 Rroxscaffold_2G00103930 Rroxscaffold_2G00103940 Rroxscaffold_2G00104010 Rroxscaffold_2G00104030 Rroxscaffold_2G00104050 Rroxscaffold_2G00104060 Rroxscaffold_2G00104070 Rroxscaffold_2G00104090 Rroxscaffold_2G00104100 Rroxscaffold_2G00104120 Rroxscaffold_2G00104130 Rroxscaffold_4G00331710
rosa_rugosa Rorug02G0367500 Rorug02G0367500 Rorug02G0367600 Rorug02G0367800 Rorug02G0367800 Rorug02G0367900 Rorug02G0368100 Rorug02G0368100 Rorug02G0368100 Rorug02G0368200 Rorug02G0368700 Rorug02G0368900 Rorug05G0155600 Rorug05G0155700 Rorug05G0155800 Rorug05G0156700 Rorug05G0157300
rosa_samantha Rh1AG028000 Rh2AG418700 Rh2AG418900 Rh2AG419000 Rh2AG419100 Rh2AG419400 Rh2AG419600 Rh2AG419800 Rh2AG420400 Rh2AG421000 Rh2BG428500 Rh2BG428600 Rh2BG428800 Rh2BG428900 Rh2BG429300 Rh2BG429400 Rh2BG429700 Rh2BG429900 Rh2BG430000 Rh2BG430700 Rh2CG405100 Rh2CG405200 Rh2CG405300 Rh2CG405500 Rh2CG405600 Rh2CG405700 Rh2CG406000 Rh2CG406100 Rh2CG406300 Rh2CG406600 Rh2CG406700 Rh2CG407500 Rh2CG408100 Rh2DG438500 Rh3DG123900 Rh3DG124000 Rh5BG249700 Rh5BG482500 Rh5CG281500 Rh5CG507300 Rh7DG133300
rosa_wichuraiana Rw0G019720 Rw0G019730 Rw0G019750 Rw0G023010 Rw2G034340 Rw2G034350 Rw2G034370 Rw2G034380 Rw2G034400 Rw2G034430 Rw2G034470 Rw2G034480 Rw2G034510 Rw5G022890 Rw5G026410 Rw5G032710 Rw5G042850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 462
AccBSI CCGCTC 1 cut(s) 204
AciI CCGC 1 cut(s) 204
AclWI GGATC 4 cut(s) 107, 161, 295, 406
AfaI GTAC 4 cut(s) 8, 134, 294, 373
AfiI CCNNNNNNNGG 1 cut(s) 337
AflII CTTAAG 1 cut(s) 409
AflIII ACRYGT 1 cut(s) 246
AgsI TTSAA 1 cut(s) 476
AluBI AGCT 5 cut(s) 159, 352, 414, 451, 524
AluI AGCT 5 cut(s) 159, 352, 414, 451, 524
Alw21I GWGCWC 1 cut(s) 453
AlwI GGATC 4 cut(s) 107, 161, 295, 406
AlwNI CAGNNNCTG 1 cut(s) 296
Ama87I CYCGRG 1 cut(s) 199
ArsI GACNNNNNNTTYG 2 cut(s) 62, 94
AspS9I GGNCC 1 cut(s) 122
AvaI CYCGRG 1 cut(s) 199
AvaII GGWCC 1 cut(s) 122
BaeGI GKGCMC 1 cut(s) 467
BanI GGYRCC 1 cut(s) 462
BanII GRGCYC 1 cut(s) 453
Bbv12I GWGCWC 1 cut(s) 453
BcgI CGANNNNNNTGC 2 cut(s) 41, 75
BfaI CTAG 1 cut(s) 459
BfmI CTRYAG 1 cut(s) 154
BfrI CTTAAG 1 cut(s) 409
BmcAI AGTACT 1 cut(s) 8
Bme18I GGWCC 1 cut(s) 122
BmeT110I CYCGRG 1 cut(s) 199
BmgT120I GGNCC 1 cut(s) 122
BmiI GGNNCC 1 cut(s) 464
BsaBI GATNNNNATC 1 cut(s) 403
BsaJI CCNNGG 1 cut(s) 186
Bsc4I CCNNNNNNNGG 1 cut(s) 337
Bse1I ACTGG 1 cut(s) 289
Bse8I GATNNNNATC 1 cut(s) 403
BseDI CCNNGG 1 cut(s) 186
BseGI GGATG 2 cut(s) 182, 435
BseJI GATNNNNATC 1 cut(s) 403
BseLI CCNNNNNNNGG 1 cut(s) 337
BseMII CTCAG 1 cut(s) 288
BseNI ACTGG 1 cut(s) 289
BseSI GKGCMC 1 cut(s) 467
BsgI GTGCAG 1 cut(s) 453
BshNI GGYRCC 1 cut(s) 462
BsiHKAI GWGCWC 1 cut(s) 453
BsiHKCI CYCGRG 1 cut(s) 199
BslI CCNNNNNNNGG 1 cut(s) 337
BsoBI CYCGRG 1 cut(s) 199
Bsp1286I GDGCHC 2 cut(s) 453, 467
Bsp143I GATC 4 cut(s) 112, 166, 287, 398
BspACI CCGC 1 cut(s) 204
BspCNI CTCAG 1 cut(s) 289
BspLI GGNNCC 1 cut(s) 464
BspPI GGATC 4 cut(s) 107, 161, 295, 406
BspT107I GGYRCC 1 cut(s) 462
BspTI CTTAAG 1 cut(s) 409
BsrBI CCGCTC 1 cut(s) 204
BsrI ACTGG 1 cut(s) 289
BssECI CCNNGG 1 cut(s) 186
BssMI GATC 4 cut(s) 112, 166, 287, 398
BssT1I CCWWGG 1 cut(s) 186
Bst4CI ACNGT 2 cut(s) 33, 155
BstAFI CTTAAG 1 cut(s) 409
BstDEI CTNAG 1 cut(s) 297
BstF5I GGATG 2 cut(s) 182, 435
BstKTI GATC 4 cut(s) 115, 169, 290, 401
BstMBI GATC 4 cut(s) 112, 166, 287, 398
BstMWI GCNNNNNNNGC 1 cut(s) 521
BstNSI RCATGY 3 cut(s) 250, 515, 519
BstSFI CTRYAG 1 cut(s) 154
BstSLI GKGCMC 1 cut(s) 467
BstX2I RGATCY 1 cut(s) 112
BstYI RGATCY 1 cut(s) 112
BtsCI GGATG 2 cut(s) 182, 435
CaiI CAGNNNCTG 1 cut(s) 296
Cfr13I GGNCC 1 cut(s) 122
Csp6I GTAC 4 cut(s) 7, 133, 293, 372
CviAII CATG 4 cut(s) 117, 247, 512, 516
CviJI RGCY 5 cut(s) 159, 352, 414, 451, 524
CviKI_1 RGCY 5 cut(s) 159, 352, 414, 451, 524
CviQI GTAC 4 cut(s) 7, 133, 293, 372
DdeI CTNAG 1 cut(s) 297
DpnI GATC 4 cut(s) 114, 168, 289, 400
DpnII GATC 4 cut(s) 112, 166, 287, 398
Ecl136II GAGCTC 1 cut(s) 451
Eco130I CCWWGG 1 cut(s) 186
Eco24I GRGCYC 1 cut(s) 453
Eco47I GGWCC 1 cut(s) 122
Eco53kI GAGCTC 1 cut(s) 451
Eco88I CYCGRG 1 cut(s) 199
EcoICRI GAGCTC 1 cut(s) 451
EcoT14I CCWWGG 1 cut(s) 186
EcoT22I ATGCAT 1 cut(s) 517
EcoT38I GRGCYC 1 cut(s) 453
ErhI CCWWGG 1 cut(s) 186
FaeI CATG 4 cut(s) 120, 250, 515, 519
FatI CATG 4 cut(s) 116, 246, 511, 515
FauNDI CATATG 1 cut(s) 85
FokI GGATG 2 cut(s) 169, 442
FriOI GRGCYC 1 cut(s) 453
FspBI CTAG 1 cut(s) 459
Hin1II CATG 4 cut(s) 120, 250, 515, 519
HincII GTYRAC 1 cut(s) 81
HindII GTYRAC 1 cut(s) 81
HindIII AAGCTT 1 cut(s) 412
HinfI GANTC 3 cut(s) 15, 177, 485
Hpy166II GTNNAC 3 cut(s) 81, 125, 362
Hpy188I TCNGA 3 cut(s) 14, 37, 163
Hpy188III TCNNGA 2 cut(s) 47, 242
Hpy8I GTNNAC 3 cut(s) 81, 125, 362
HpyAV CCTTC 1 cut(s) 137
HpyCH4III ACNGT 2 cut(s) 33, 155
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 4 cut(s) 62, 470, 498, 515
HpyF10VI GCNNNNNNNGC 1 cut(s) 521
HpyF3I CTNAG 1 cut(s) 297
HpySE526I ACGT 1 cut(s) 135
Hsp92II CATG 4 cut(s) 120, 250, 515, 519
Kzo9I GATC 4 cut(s) 112, 166, 287, 398
LmnI GCTCC 2 cut(s) 448, 456
LpnPI CCDG 7 cut(s) 92, 124, 198, 270, 309, 335, 480
MaeI CTAG 1 cut(s) 459
MaeII ACGT 1 cut(s) 135
MaeIII GTNAC 3 cut(s) 249, 280, 491
MalI GATC 4 cut(s) 114, 168, 289, 400
MbiI CCGCTC 1 cut(s) 204
MboI GATC 4 cut(s) 112, 166, 287, 398
MflI RGATCY 1 cut(s) 112
MhlI GDGCHC 2 cut(s) 453, 467
MluCI AATT 2 cut(s) 100, 311
MlyI GAGTC 1 cut(s) 24
MmeI TCCRAC 1 cut(s) 15
MnlI CCTC 1 cut(s) 208
Mph1103I ATGCAT 1 cut(s) 517
MseI TTAA 3 cut(s) 333, 410, 526
MspCI CTTAAG 1 cut(s) 409
MwoI GCNNNNNNNGC 1 cut(s) 521
NdeI CATATG 1 cut(s) 85
NdeII GATC 4 cut(s) 112, 166, 287, 398
NlaIII CATG 4 cut(s) 120, 250, 515, 519
NlaIV GGNNCC 1 cut(s) 464
NsiI ATGCAT 1 cut(s) 517
NspI RCATGY 3 cut(s) 250, 515, 519
PaeR7I CTCGAG 1 cut(s) 199
PciI ACATGT 1 cut(s) 246
PfeI GAWTC 2 cut(s) 177, 485
PleI GAGTC 1 cut(s) 23
PpsI GAGTC 1 cut(s) 23
PscI ACATGT 1 cut(s) 246
Psp124BI GAGCTC 1 cut(s) 453
PspN4I GGNNCC 1 cut(s) 464
PspPI GGNCC 1 cut(s) 122
PspXI VCTCGAGB 1 cut(s) 199
PstNI CAGNNNCTG 1 cut(s) 296
PsuI RGATCY 1 cut(s) 112
RsaI GTAC 4 cut(s) 8, 134, 294, 373
RsaNI GTAC 4 cut(s) 7, 133, 293, 372
SacI GAGCTC 1 cut(s) 453
SaqAI TTAA 3 cut(s) 333, 410, 526
Sau3AI GATC 4 cut(s) 112, 166, 287, 398
Sau96I GGNCC 1 cut(s) 122
ScaI AGTACT 1 cut(s) 8
SchI GAGTC 1 cut(s) 24
SduI GDGCHC 2 cut(s) 453, 467
SfcI CTRYAG 1 cut(s) 154
Sfr274I CTCGAG 1 cut(s) 199
SinI GGWCC 1 cut(s) 122
SlaI CTCGAG 1 cut(s) 199
SmlI CTYRAG 2 cut(s) 199, 409
SmoI CTYRAG 2 cut(s) 199, 409
Sse9I AATT 2 cut(s) 100, 311
SsiI CCGC 1 cut(s) 204
SspI AATATT 1 cut(s) 480
SspMI CTAG 1 cut(s) 459
SstI GAGCTC 1 cut(s) 453
StyI CCWWGG 1 cut(s) 186
TaaI ACNGT 2 cut(s) 33, 155
TaiI ACGT 1 cut(s) 138
TaqI TCGA 3 cut(s) 200, 381, 389
TasI AATT 2 cut(s) 100, 311
TatI WGTACW 1 cut(s) 6
TfiI GAWTC 2 cut(s) 177, 485
Tru1I TTAA 3 cut(s) 333, 410, 526
Tru9I TTAA 3 cut(s) 333, 410, 526
TspDTI ATGAA 2 cut(s) 216, 446
Vha464I CTTAAG 1 cut(s) 409
VpaK11BI GGWCC 1 cut(s) 122
XceI RCATGY 3 cut(s) 250, 515, 519
XhoI CTCGAG 1 cut(s) 199
XspI CTAG 1 cut(s) 459
ZrmI AGTACT 1 cut(s) 8
Zsp2I ATGCAT 1 cut(s) 517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.