RLG00000013062

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
25504468 .. 25505844
1377 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013062

Sequence Viewer

Length: 525 bp
ATGAACTCTAATTCTATTCAGAGCTGGTCATTGGAGTCAGAGGATCAACGCTGTACATACTCAGAGCTTGTGAAGATTACCAATAATTTTGCATCAATCATCGGAAGAGGCAGATTCGAAAGAGTCTACCATGGCACTCTGAAAAATGATATTCAAGTCGCTGTGAAGTTACTGACTTCTTCTTCCAGGCAAGGCTCAAAAGAATTCCAAAATGAGGTTAAACTATTGATGACAGCTCATCAACCAAACTTGGTTTCTCTCATTGGTTACTGCGATGAAGGTGACAGTATGGCACTTGTTTTTGAGTATGTAGCCAATGGAAATTTGCAGCAACATTTATCAGGGTTGGATTATCTACATGGTTGCAAGCCACCTATAGTCCATAGAGATCTGAAGGCTTCCAATATCTTGTTAAATGAAAAGTTGCATGCCAAGATAGCTGATTTTGGTCTTTCTAAAGTTCTTGCAACTGAAAGCGCCACTCATATATCAACTGATGCCAAAGGAACATCCGTGCCATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

175

Amino Acids

19.27

Weight (kDa)

6.65

Isoelectric Point (pI)

27.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 31 - 113 1.8e-17 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 32 - 164 3.2e-25 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 114 - 166 6.8e-11 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000083)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07560 AT1G51790 AT1G51790 AT1G51790 AT1G51800 AT1G51805 AT1G51805 AT1G51810 AT1G51820 AT1G51820 AT1G51830 AT1G51830 AT1G51840 AT1G51840 AT1G51840 AT1G51840 AT1G51840 AT1G51850 AT1G51850 AT1G51860 AT1G51860 AT1G51870 AT1G51870 AT1G51880 AT1G51880 AT1G51880 AT1G51890 AT1G51890 AT1G51890 AT1G51890 AT1G51890 AT1G51910 AT2G04300 AT2G04300 AT2G28960 AT2G28960 AT2G28970 AT2G28970 AT2G28990 AT2G28990 AT2G29000 AT3G21340 AT3G46350 AT5G59616 AT5G59650 AT5G59650 AT5G59660 AT5G59660 AT5G59660 AT5G59670 AT5G59670 AT5G59680
fragaria_vesca FvH4_2g03270 FvH4_3g21300 FvH4_6g32660 FvH4_6g32660 FvH4_6g32670 FvH4_6g32670 FvH4_6g32690 FvH4_6g32690 FvH4_6g32691 FvH4_6g32700 FvH4_6g32740 FvH4_6g32750 FvH4_6g33210 FvH4_6g33210 FvH4_7g24270 FvH4_7g24280 FvH4_7g24291 FvH4_7g24300
malus_domestica MD09G1198400.v1.1 MD09G1198600.v1.1 MD09G1199100.v1.1 MD09G1199200.v1.1 MD09G1199300.v1.1 MD09G1199500.v1.1 MD09G1199600.v1.1 MD17G1179300.v1.1 MD17G1180200.v1.1 MD17G1266000.v1.1
prunus_persica Prupe.1G438900_v2.0.a1 Prupe.1G439000_v2.0.a1 Prupe.1G439100_v2.0.a1 Prupe.3G019400_v2.0.a1 Prupe.3G021900_v2.0.a1 Prupe.3G054500_v2.0.a1 Prupe.3G054500_v2.0.a1 Prupe.3G055100_v2.0.a1 Prupe.3G055400_v2.0.a1 Prupe.3G055500_v2.0.a1 Prupe.3G055600_v2.0.a1 Prupe.3G055700_v2.0.a1 Prupe.3G055800_v2.0.a1 Prupe.3G055900_v2.0.a1 Prupe.3G055900_v2.0.a1 Prupe.3G056000_v2.0.a1 Prupe.3G056000_v2.0.a1 Prupe.3G056100_v2.0.a1 Prupe.3G209600_v2.0.a1 Prupe.3G209700_v2.0.a1 Prupe.6G291100_v2.0.a1 Prupe.7G208900_v2.0.a1 Prupe.8G038300_v2.0.a1
pyrus_communis pycom09g11570 pycom09g11580 pycom09g11610 pycom09g11630 pycom09g11640 pycom17g18840 pycom17g18910 pycom17g18930 pycom17g18940
rosa_chinensis RchiOBHm_Chr1g0317521 RchiOBHm_Chr1g0317541 RchiOBHm_Chr2g0123351 RchiOBHm_Chr2g0141181 RchiOBHm_Chr2g0141191 RchiOBHm_Chr2g0141211 RchiOBHm_Chr2g0141221 RchiOBHm_Chr2g0141261 RchiOBHm_Chr2g0141271 RchiOBHm_Chr2g0141311 RchiOBHm_Chr2g0141331 RchiOBHm_Chr2g0141371 RchiOBHm_Chr2g0141391 RchiOBHm_Chr2g0141401 RchiOBHm_Chr2g0141431 RchiOBHm_Chr2g0141481 RchiOBHm_Chr2g0141491 RchiOBHm_Chr2g0141591 RchiOBHm_Chr2g0141601 RchiOBHm_Chr2g0141611 RchiOBHm_Chr2g0141631 RchiOBHm_Chr2g0141641 RchiOBHm_Chr2g0141661 RchiOBHm_Chr2g0141681 RchiOBHm_Chr2g0141701 RchiOBHm_Chr2g0141781 RchiOBHm_Chr2g0141811 RchiOBHm_Chr2g0141821 RchiOBHm_Chr3g0479311 RchiOBHm_Chr3g0495751 RchiOBHm_Chr4g0404741 RchiOBHm_Chr4g0410341 RchiOBHm_Chr4g0418371 RchiOBHm_Chr4g0438651 RchiOBHm_Chr5g0036411 RchiOBHm_Chr5g0036491 RchiOBHm_Chr5g0042391 RchiOBHm_Chr6g0279871 RchiOBHm_Chr7g0192921 RchiOBHm_Chr7g0214901 RchiOBHm_Chr7g0234931
rosa_laevigata RLG00000003432 RLG00000008806 RLG00000013062 RLG00000019514 RLG00000019923 RLG00000019924 RLG00000019925 RLG00000019930 RLG00000019931 RLG00000019934 RLG00000019937 RLG00000019938 RLG00000033697
rosa_multiflora Rmu_co8002302.1_g000001 Rmu_sc0000147.1_g000031 Rmu_sc0000463.1_g000005 Rmu_sc0000712.1_g000003 Rmu_sc0001483.1_g000017 Rmu_sc0001554.1_g000002 Rmu_sc0001554.1_g000005 Rmu_sc0001554.1_g000008 Rmu_sc0001981.1_g000017 Rmu_sc0002040.1_g000056 Rmu_sc0002755.1_g000018 Rmu_sc0002804.1_g000016 Rmu_sc0002928.1_g000015 Rmu_sc0003040.1_g000008 Rmu_sc0003040.1_g000018 Rmu_sc0004512.1_g000001 Rmu_sc0004512.1_g000004 Rmu_sc0005507.1_g000001 Rmu_sc0005507.1_g000009 Rmu_sc0005507.1_g000033 Rmu_sc0005507.1_g000037 Rmu_sc0005507.1_g000043 Rmu_sc0005507.1_g000047 Rmu_sc0006318.1_g000004 Rmu_sc0006318.1_g000014 Rmu_sc0006318.1_g000021 Rmu_sc0006556.1_g000001 Rmu_sc0007208.1_g000002 Rmu_sc0007208.1_g000003 Rmu_sc0007208.1_g000006 Rmu_sc0007208.1_g000008
rosa_roxburghii Rroxscaffold_1G00044430 Rroxscaffold_2G00103420 Rroxscaffold_2G00103470 Rroxscaffold_2G00103490 Rroxscaffold_2G00103500 Rroxscaffold_2G00103520 Rroxscaffold_2G00103530 Rroxscaffold_2G00103540 Rroxscaffold_2G00103550 Rroxscaffold_2G00103570 Rroxscaffold_2G00103770 Rroxscaffold_2G00103780 Rroxscaffold_2G00103800 Rroxscaffold_2G00103820 Rroxscaffold_2G00103860 Rroxscaffold_2G00103890 Rroxscaffold_2G00103930 Rroxscaffold_2G00103940 Rroxscaffold_2G00104010 Rroxscaffold_2G00104030 Rroxscaffold_2G00104050 Rroxscaffold_2G00104060 Rroxscaffold_2G00104070 Rroxscaffold_2G00104090 Rroxscaffold_2G00104100 Rroxscaffold_2G00104120 Rroxscaffold_2G00104130 Rroxscaffold_4G00331710
rosa_rugosa Rorug02G0367500 Rorug02G0367500 Rorug02G0367600 Rorug02G0367800 Rorug02G0367800 Rorug02G0367900 Rorug02G0368100 Rorug02G0368100 Rorug02G0368100 Rorug02G0368200 Rorug02G0368700 Rorug02G0368900 Rorug05G0155600 Rorug05G0155700 Rorug05G0155800 Rorug05G0156700 Rorug05G0157300
rosa_samantha Rh1AG028000 Rh2AG418700 Rh2AG418900 Rh2AG419000 Rh2AG419100 Rh2AG419400 Rh2AG419600 Rh2AG419800 Rh2AG420400 Rh2AG421000 Rh2BG428500 Rh2BG428600 Rh2BG428800 Rh2BG428900 Rh2BG429300 Rh2BG429400 Rh2BG429700 Rh2BG429900 Rh2BG430000 Rh2BG430700 Rh2CG405100 Rh2CG405200 Rh2CG405300 Rh2CG405500 Rh2CG405600 Rh2CG405700 Rh2CG406000 Rh2CG406100 Rh2CG406300 Rh2CG406600 Rh2CG406700 Rh2CG407500 Rh2CG408100 Rh2DG438500 Rh3DG123900 Rh3DG124000 Rh5BG249700 Rh5BG482500 Rh5CG281500 Rh5CG507300 Rh7DG133300
rosa_wichuraiana Rw0G019720 Rw0G019730 Rw0G019750 Rw0G023010 Rw2G034340 Rw2G034350 Rw2G034370 Rw2G034380 Rw2G034400 Rw2G034430 Rw2G034470 Rw2G034480 Rw2G034510 Rw5G022890 Rw5G026410 Rw5G032710 Rw5G042850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 126
AclWI GGATC 1 cut(s) 51
AcsI RAATTY 2 cut(s) 203, 322
AcuI CTGAAG 1 cut(s) 413
AfaI GTAC 1 cut(s) 55
AfiI CCNNNNNNNGG 1 cut(s) 214
AgsI TTSAA 1 cut(s) 155
AjnI CCWGG 1 cut(s) 185
AjuI GAANNNNNNNTTGG 2 cut(s) 238, 270
AluBI AGCT 4 cut(s) 24, 67, 236, 440
AluI AGCT 4 cut(s) 24, 67, 236, 440
AlwI GGATC 1 cut(s) 51
ApeKI GCWGC 1 cut(s) 328
ApoI RAATTY 2 cut(s) 203, 322
AspLEI GCGC 1 cut(s) 479
AsuHPI GGTGA 1 cut(s) 293
AsuII TTCGAA 1 cut(s) 117
BbvI GCAGC 1 cut(s) 340
BciT130I CCWGG 1 cut(s) 187
BfmI CTRYAG 1 cut(s) 375
BfoI RGCGCY 1 cut(s) 480
BglII AGATCT 1 cut(s) 388
BisI GCNGC 1 cut(s) 329
BlsI GCNGC 1 cut(s) 330
Bme1390I CCNGG 1 cut(s) 187
BmrFI CCNGG 1 cut(s) 187
BmsI GCATC 2 cut(s) 101, 487
Bpu14I TTCGAA 1 cut(s) 117
BsaJI CCNNGG 1 cut(s) 130
Bsc4I CCNNNNNNNGG 1 cut(s) 214
BseBI CCWGG 1 cut(s) 187
BseDI CCNNGG 1 cut(s) 130
BseGI GGATG 1 cut(s) 509
BseLI CCNNNNNNNGG 1 cut(s) 214
BseMII CTCAG 1 cut(s) 75
BseXI GCAGC 1 cut(s) 340
BslI CCNNNNNNNGG 1 cut(s) 214
Bsp119I TTCGAA 1 cut(s) 117
Bsp1407I TGTACA 1 cut(s) 53
Bsp143I GATC 2 cut(s) 43, 388
Bsp19I CCATGG 1 cut(s) 130
BspCNI CTCAG 1 cut(s) 74
BspPI GGATC 1 cut(s) 51
BspT104I TTCGAA 1 cut(s) 117
BsrGI TGTACA 1 cut(s) 53
BssECI CCNNGG 1 cut(s) 130
BssMI GATC 2 cut(s) 43, 388
BssT1I CCWWGG 1 cut(s) 130
Bst2UI CCWGG 1 cut(s) 187
Bst4CI ACNGT 1 cut(s) 287
Bst6I CTCTTC 1 cut(s) 100
BstAUI TGTACA 1 cut(s) 53
BstBI TTCGAA 1 cut(s) 117
BstC8I GCNNGC 2 cut(s) 368, 429
BstDEI CTNAG 1 cut(s) 61
BstDSI CCRYGG 1 cut(s) 130
BstF5I GGATG 1 cut(s) 509
BstH2I RGCGCY 1 cut(s) 480
BstHHI GCGC 1 cut(s) 479
BstKTI GATC 2 cut(s) 46, 391
BstMBI GATC 2 cut(s) 43, 388
BstMWI GCNNNNNNNGC 1 cut(s) 437
BstNI CCWGG 1 cut(s) 187
BstNSI RCATGY 1 cut(s) 431
BstSCI CCNGG 1 cut(s) 185
BstSFI CTRYAG 1 cut(s) 375
BstV1I GCAGC 1 cut(s) 340
BstX2I RGATCY 1 cut(s) 388
BstYI RGATCY 1 cut(s) 388
BtgI CCRYGG 1 cut(s) 130
BtgZI GCGATG 1 cut(s) 288
BtsCI GGATG 1 cut(s) 509
Cac8I GCNNGC 2 cut(s) 368, 429
CfoI GCGC 1 cut(s) 479
Csp6I GTAC 1 cut(s) 54
CviAII CATG 3 cut(s) 131, 359, 428
CviJI RGCY 8 cut(s) 24, 67, 195, 236, 314, 370, 398, 440
CviKI_1 RGCY 8 cut(s) 24, 67, 195, 236, 314, 370, 398, 440
CviQI GTAC 1 cut(s) 54
DdeI CTNAG 1 cut(s) 61
DpnI GATC 2 cut(s) 45, 390
DpnII GATC 2 cut(s) 43, 388
Eam1104I CTCTTC 1 cut(s) 100
EarI CTCTTC 1 cut(s) 100
Eco130I CCWWGG 1 cut(s) 130
Eco57I CTGAAG 1 cut(s) 413
EcoRI GAATTC 1 cut(s) 203
EcoRII CCWGG 1 cut(s) 185
EcoT14I CCWWGG 1 cut(s) 130
ErhI CCWWGG 1 cut(s) 130
FaeI CATG 3 cut(s) 134, 362, 431
FatI CATG 3 cut(s) 130, 358, 427
FblI GTMKAC 1 cut(s) 126
Fnu4HI GCNGC 1 cut(s) 329
FokI GGATG 1 cut(s) 496
Fsp4HI GCNGC 1 cut(s) 329
GlaI GCGC 1 cut(s) 478
GluI GCNGC 1 cut(s) 329
HaeII RGCGCY 1 cut(s) 480
HhaI GCGC 1 cut(s) 479
Hin1II CATG 3 cut(s) 134, 362, 431
Hin6I GCGC 1 cut(s) 477
HinP1I GCGC 1 cut(s) 477
HinfI GANTC 3 cut(s) 35, 114, 123
HphI GGTGA 1 cut(s) 293
Hpy166II GTNNAC 1 cut(s) 127
Hpy188I TCNGA 6 cut(s) 21, 40, 64, 104, 141, 393
Hpy8I GTNNAC 1 cut(s) 127
HpyAV CCTTC 2 cut(s) 272, 388
HpyCH4III ACNGT 1 cut(s) 287
HpyCH4V TGCA 5 cut(s) 92, 328, 366, 427, 467
HpyF10VI GCNNNNNNNGC 1 cut(s) 437
HpyF3I CTNAG 1 cut(s) 61
Hsp92II CATG 3 cut(s) 134, 362, 431
HspAI GCGC 1 cut(s) 477
Kzo9I GATC 2 cut(s) 43, 388
LpnPI CCDG 4 cut(s) 10, 172, 199, 327
Lsp1109I GCAGC 1 cut(s) 340
LweI GCATC 2 cut(s) 101, 487
MaeIII GTNAC 3 cut(s) 168, 266, 281
MalI GATC 2 cut(s) 45, 390
MboI GATC 2 cut(s) 43, 388
MboII GAAGA 4 cut(s) 85, 117, 171, 174
MflI RGATCY 1 cut(s) 388
MluCI AATT 4 cut(s) 10, 85, 203, 322
MlyI GAGTC 2 cut(s) 44, 132
MmeI TCCRAC 1 cut(s) 327
MnlI CCTC 3 cut(s) 34, 101, 208
MseI TTAA 2 cut(s) 219, 413
MspR9I CCNGG 1 cut(s) 187
MvaI CCWGG 1 cut(s) 187
MwoI GCNNNNNNNGC 1 cut(s) 437
NcoI CCATGG 1 cut(s) 130
NdeII GATC 2 cut(s) 43, 388
NlaIII CATG 3 cut(s) 134, 362, 431
NmuCI GTSAC 1 cut(s) 281
NspI RCATGY 1 cut(s) 431
NspV TTCGAA 1 cut(s) 117
PaeI GCATGC 1 cut(s) 431
PfeI GAWTC 1 cut(s) 114
PkrI GCNGC 1 cut(s) 330
PleI GAGTC 2 cut(s) 43, 131
PpsI GAGTC 2 cut(s) 43, 131
Psp6I CCWGG 1 cut(s) 185
PspGI CCWGG 1 cut(s) 185
PsuI RGATCY 1 cut(s) 388
RsaI GTAC 1 cut(s) 55
RsaNI GTAC 1 cut(s) 54
SaqAI TTAA 2 cut(s) 219, 413
SatI GCNGC 1 cut(s) 329
Sau3AI GATC 2 cut(s) 43, 388
SchI GAGTC 2 cut(s) 44, 132
ScrFI CCNGG 1 cut(s) 187
SetI ASST 7 cut(s) 26, 69, 219, 238, 283, 376, 442
SfaNI GCATC 2 cut(s) 101, 487
SfcI CTRYAG 1 cut(s) 375
SfuI TTCGAA 1 cut(s) 117
SphI GCATGC 1 cut(s) 431
Sse9I AATT 4 cut(s) 10, 85, 203, 322
StyD4I CCNGG 1 cut(s) 185
StyI CCWWGG 1 cut(s) 130
TaaI ACNGT 1 cut(s) 287
TaqI TCGA 1 cut(s) 117
TasI AATT 4 cut(s) 10, 85, 203, 322
TatI WGTACW 1 cut(s) 53
TfiI GAWTC 1 cut(s) 114
Tru1I TTAA 2 cut(s) 219, 413
Tru9I TTAA 2 cut(s) 219, 413
TseFI GTSAC 1 cut(s) 281
TseI GCWGC 1 cut(s) 328
Tsp45I GTSAC 1 cut(s) 281
TspDTI ATGAA 3 cut(s) 17, 291, 432
TspGWI ACGGA 1 cut(s) 502
XapI RAATTY 2 cut(s) 203, 322
XceI RCATGY 1 cut(s) 431
XmiI GTMKAC 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.