Rw5G042850

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
74889413 .. 74890798
1386 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G042850.1

Sequence Viewer

Length: 939 bp
ATGGATTCATTAGAAAATTTCGAGTCCAAGAAGAGACAATTTACATACTCAGAGGTGCTGACAATTACTAACAACTTTCAGACAATTCTTGGGAAAGGTGGATTTGGACTGGTTTACCATGGCTATGTAGATGATACTCAAGTAGCTGTGAAAGTACTTTCTCCATCATCAGTTCAAGGATACCAACAATTTCAAGCAGAGGTCAAACTTCTTATGAGAGTTCATCATAGAAACTTGACTGGCCTTGTTGGATATTGCAATGAAGGAACGAACATGGCTCTCCTCTACGAATACATGGCCAATGGAAATCTGGAATCGCATCTCTTGGGTGAAGATAGCAATGTAACTCTCTTGACTTGGGAAAGTCGACTTAGAATAGCGGCTGATGCAGCACAAGGACTGGAGTATCTTCACAATGGTTGTAAGCCACCTATTATCCACAGAGATGTGAAGACACCAAATATTTTGTTAGCCGAAAATTTCCAAGCAAAGTTGGCTGATTTTGGCCTATCCAGAATGTTCTCAACTGACGAAGGCACTCATATGTCAACAGCTGTTGCTGGCACCCCTGGATACCTTGACCCTGAGTACCACATAACAGGCTGGTTGAATGAGAAGAGTGATGTATATAGCTTTGGAGTTGTTCTCTTGCAGATAATAACTAGCCGACCTGTGATATCAAGAACAGCCCAAGTGAATAGTCATGTAAGTCAATGGGTTAGCTCCATGCTTTCTAATGGGGATATCAAAAGTATTGTTGATCCTAAGTTACGAGGAGACTTTGAAATCAACTCTGCGTGGAAGGCTGTTGAGTTGGCAAGGGATTGTATGTCTGAAATGTCAACCGGAAGGCCAAACATGAGTGAGGTGGTGACAAGACTCAAAGAGTGCTTGGGAGCAGAGTTGGCTCGAATAAATGAAAGTGGTAGGTTCAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

312

Amino Acids

34.78

Weight (kDa)

5.87

Isoelectric Point (pI)

32.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 26 - 294 1.9e-44 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 28 - 291 1.5e-40 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000083)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07560 AT1G51790 AT1G51790 AT1G51790 AT1G51800 AT1G51805 AT1G51805 AT1G51810 AT1G51820 AT1G51820 AT1G51830 AT1G51830 AT1G51840 AT1G51840 AT1G51840 AT1G51840 AT1G51840 AT1G51850 AT1G51850 AT1G51860 AT1G51860 AT1G51870 AT1G51870 AT1G51880 AT1G51880 AT1G51880 AT1G51890 AT1G51890 AT1G51890 AT1G51890 AT1G51890 AT1G51910 AT2G04300 AT2G04300 AT2G28960 AT2G28960 AT2G28970 AT2G28970 AT2G28990 AT2G28990 AT2G29000 AT3G21340 AT3G46350 AT5G59616 AT5G59650 AT5G59650 AT5G59660 AT5G59660 AT5G59660 AT5G59670 AT5G59670 AT5G59680
fragaria_vesca FvH4_2g03270 FvH4_3g21300 FvH4_6g32660 FvH4_6g32660 FvH4_6g32670 FvH4_6g32670 FvH4_6g32690 FvH4_6g32690 FvH4_6g32691 FvH4_6g32700 FvH4_6g32740 FvH4_6g32750 FvH4_6g33210 FvH4_6g33210 FvH4_7g24270 FvH4_7g24280 FvH4_7g24291 FvH4_7g24300
malus_domestica MD09G1198400.v1.1 MD09G1198600.v1.1 MD09G1199100.v1.1 MD09G1199200.v1.1 MD09G1199300.v1.1 MD09G1199500.v1.1 MD09G1199600.v1.1 MD17G1179300.v1.1 MD17G1180200.v1.1 MD17G1266000.v1.1
prunus_persica Prupe.1G438900_v2.0.a1 Prupe.1G439000_v2.0.a1 Prupe.1G439100_v2.0.a1 Prupe.3G019400_v2.0.a1 Prupe.3G021900_v2.0.a1 Prupe.3G054500_v2.0.a1 Prupe.3G054500_v2.0.a1 Prupe.3G055100_v2.0.a1 Prupe.3G055400_v2.0.a1 Prupe.3G055500_v2.0.a1 Prupe.3G055600_v2.0.a1 Prupe.3G055700_v2.0.a1 Prupe.3G055800_v2.0.a1 Prupe.3G055900_v2.0.a1 Prupe.3G055900_v2.0.a1 Prupe.3G056000_v2.0.a1 Prupe.3G056000_v2.0.a1 Prupe.3G056100_v2.0.a1 Prupe.3G209600_v2.0.a1 Prupe.3G209700_v2.0.a1 Prupe.6G291100_v2.0.a1 Prupe.7G208900_v2.0.a1 Prupe.8G038300_v2.0.a1
pyrus_communis pycom09g11570 pycom09g11580 pycom09g11610 pycom09g11630 pycom09g11640 pycom17g18840 pycom17g18910 pycom17g18930 pycom17g18940
rosa_chinensis RchiOBHm_Chr1g0317521 RchiOBHm_Chr1g0317541 RchiOBHm_Chr2g0123351 RchiOBHm_Chr2g0141181 RchiOBHm_Chr2g0141191 RchiOBHm_Chr2g0141211 RchiOBHm_Chr2g0141221 RchiOBHm_Chr2g0141261 RchiOBHm_Chr2g0141271 RchiOBHm_Chr2g0141311 RchiOBHm_Chr2g0141331 RchiOBHm_Chr2g0141371 RchiOBHm_Chr2g0141391 RchiOBHm_Chr2g0141401 RchiOBHm_Chr2g0141431 RchiOBHm_Chr2g0141481 RchiOBHm_Chr2g0141491 RchiOBHm_Chr2g0141591 RchiOBHm_Chr2g0141601 RchiOBHm_Chr2g0141611 RchiOBHm_Chr2g0141631 RchiOBHm_Chr2g0141641 RchiOBHm_Chr2g0141661 RchiOBHm_Chr2g0141681 RchiOBHm_Chr2g0141701 RchiOBHm_Chr2g0141781 RchiOBHm_Chr2g0141811 RchiOBHm_Chr2g0141821 RchiOBHm_Chr3g0479311 RchiOBHm_Chr3g0495751 RchiOBHm_Chr4g0404741 RchiOBHm_Chr4g0410341 RchiOBHm_Chr4g0418371 RchiOBHm_Chr4g0438651 RchiOBHm_Chr5g0036411 RchiOBHm_Chr5g0036491 RchiOBHm_Chr5g0042391 RchiOBHm_Chr6g0279871 RchiOBHm_Chr7g0192921 RchiOBHm_Chr7g0214901 RchiOBHm_Chr7g0234931
rosa_laevigata RLG00000003432 RLG00000008806 RLG00000013062 RLG00000019514 RLG00000019923 RLG00000019924 RLG00000019925 RLG00000019930 RLG00000019931 RLG00000019934 RLG00000019937 RLG00000019938 RLG00000033697
rosa_multiflora Rmu_co8002302.1_g000001 Rmu_sc0000147.1_g000031 Rmu_sc0000463.1_g000005 Rmu_sc0000712.1_g000003 Rmu_sc0001483.1_g000017 Rmu_sc0001554.1_g000002 Rmu_sc0001554.1_g000005 Rmu_sc0001554.1_g000008 Rmu_sc0001981.1_g000017 Rmu_sc0002040.1_g000056 Rmu_sc0002755.1_g000018 Rmu_sc0002804.1_g000016 Rmu_sc0002928.1_g000015 Rmu_sc0003040.1_g000008 Rmu_sc0003040.1_g000018 Rmu_sc0004512.1_g000001 Rmu_sc0004512.1_g000004 Rmu_sc0005507.1_g000001 Rmu_sc0005507.1_g000009 Rmu_sc0005507.1_g000033 Rmu_sc0005507.1_g000037 Rmu_sc0005507.1_g000043 Rmu_sc0005507.1_g000047 Rmu_sc0006318.1_g000004 Rmu_sc0006318.1_g000014 Rmu_sc0006318.1_g000021 Rmu_sc0006556.1_g000001 Rmu_sc0007208.1_g000002 Rmu_sc0007208.1_g000003 Rmu_sc0007208.1_g000006 Rmu_sc0007208.1_g000008
rosa_roxburghii Rroxscaffold_1G00044430 Rroxscaffold_2G00103420 Rroxscaffold_2G00103470 Rroxscaffold_2G00103490 Rroxscaffold_2G00103500 Rroxscaffold_2G00103520 Rroxscaffold_2G00103530 Rroxscaffold_2G00103540 Rroxscaffold_2G00103550 Rroxscaffold_2G00103570 Rroxscaffold_2G00103770 Rroxscaffold_2G00103780 Rroxscaffold_2G00103800 Rroxscaffold_2G00103820 Rroxscaffold_2G00103860 Rroxscaffold_2G00103890 Rroxscaffold_2G00103930 Rroxscaffold_2G00103940 Rroxscaffold_2G00104010 Rroxscaffold_2G00104030 Rroxscaffold_2G00104050 Rroxscaffold_2G00104060 Rroxscaffold_2G00104070 Rroxscaffold_2G00104090 Rroxscaffold_2G00104100 Rroxscaffold_2G00104120 Rroxscaffold_2G00104130 Rroxscaffold_4G00331710
rosa_rugosa Rorug02G0367500 Rorug02G0367500 Rorug02G0367600 Rorug02G0367800 Rorug02G0367800 Rorug02G0367900 Rorug02G0368100 Rorug02G0368100 Rorug02G0368100 Rorug02G0368200 Rorug02G0368700 Rorug02G0368900 Rorug05G0155600 Rorug05G0155700 Rorug05G0155800 Rorug05G0156700 Rorug05G0157300
rosa_samantha Rh1AG028000 Rh2AG418700 Rh2AG418900 Rh2AG419000 Rh2AG419100 Rh2AG419400 Rh2AG419600 Rh2AG419800 Rh2AG420400 Rh2AG421000 Rh2BG428500 Rh2BG428600 Rh2BG428800 Rh2BG428900 Rh2BG429300 Rh2BG429400 Rh2BG429700 Rh2BG429900 Rh2BG430000 Rh2BG430700 Rh2CG405100 Rh2CG405200 Rh2CG405300 Rh2CG405500 Rh2CG405600 Rh2CG405700 Rh2CG406000 Rh2CG406100 Rh2CG406300 Rh2CG406600 Rh2CG406700 Rh2CG407500 Rh2CG408100 Rh2DG438500 Rh3DG123900 Rh3DG124000 Rh5BG249700 Rh5BG482500 Rh5CG281500 Rh5CG507300 Rh7DG133300
rosa_wichuraiana Rw0G019720 Rw0G019730 Rw0G019750 Rw0G023010 Rw2G034340 Rw2G034350 Rw2G034370 Rw2G034380 Rw2G034400 Rw2G034430 Rw2G034470 Rw2G034480 Rw2G034510 Rw5G022890 Rw5G026410 Rw5G032710 Rw5G042850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 563
AccI GTMKAC 1 cut(s) 367
AciI CCGC 1 cut(s) 380
AclWI GGATC 1 cut(s) 755
AcoI YGGCCR 1 cut(s) 297
AcsI RAATTY 2 cut(s) 16, 478
AfaI GTAC 2 cut(s) 156, 590
AgsI TTSAA 4 cut(s) 176, 194, 610, 785
AjnI CCWGG 1 cut(s) 568
AluBI AGCT 4 cut(s) 146, 554, 633, 723
AluI AGCT 4 cut(s) 146, 554, 633, 723
Alw26I GTCTC 2 cut(s) 28, 771
AlwI GGATC 1 cut(s) 755
AoxI GGCC 4 cut(s) 241, 297, 505, 851
ApeKI GCWGC 1 cut(s) 389
ApoI RAATTY 2 cut(s) 16, 478
AsuHPI GGTGA 2 cut(s) 341, 883
BaeI ACNNNNGTAYC 4 cut(s) 126, 159, 389, 422
BalI TGGCCA 1 cut(s) 299
BanI GGYRCC 1 cut(s) 563
BbsI GAAGAC 1 cut(s) 458
BbvI GCAGC 1 cut(s) 401
BccI CCATC 1 cut(s) 172
BciT130I CCWGG 1 cut(s) 570
BciVI GTATCC 2 cut(s) 173, 566
BcoDI GTCTC 2 cut(s) 28, 771
BfaI CTAG 1 cut(s) 663
BfuI GTATCC 2 cut(s) 173, 566
BisI GCNGC 2 cut(s) 381, 390
BlsI GCNGC 2 cut(s) 382, 391
BmcAI AGTACT 1 cut(s) 156
Bme1390I CCNGG 1 cut(s) 570
BmiI GGNNCC 1 cut(s) 565
BmrFI CCNGG 1 cut(s) 570
BmsI GCATC 2 cut(s) 328, 376
BpiI GAAGAC 1 cut(s) 458
BplI GAGNNNNNCTC 2 cut(s) 630, 662
BpmI CTGGAG 1 cut(s) 422
BpuEI CTTGAG 1 cut(s) 123
BsaJI CCNNGG 2 cut(s) 118, 568
BsaWI WCCGGW 1 cut(s) 845
Bse1I ACTGG 3 cut(s) 114, 244, 405
Bse3DI GCAATG 2 cut(s) 265, 346
BseBI CCWGG 1 cut(s) 570
BseDI CCNNGG 2 cut(s) 118, 568
BseMI GCAATG 2 cut(s) 265, 346
BseMII CTCAG 2 cut(s) 63, 576
BseNI ACTGG 3 cut(s) 114, 244, 405
BseRI GAGGAG 2 cut(s) 272, 789
BseXI GCAGC 1 cut(s) 401
BshFI GGCC 4 cut(s) 243, 299, 507, 853
BshNI GGYRCC 1 cut(s) 563
BsiSI CCGG 1 cut(s) 846
BsmAI GTCTC 2 cut(s) 28, 771
BsnI GGCC 4 cut(s) 243, 299, 507, 853
Bsp143I GATC 1 cut(s) 760
Bsp19I CCATGG 1 cut(s) 118
BspACI CCGC 1 cut(s) 380
BspANI GGCC 4 cut(s) 243, 299, 507, 853
BspCNI CTCAG 2 cut(s) 62, 577
BspLI GGNNCC 1 cut(s) 565
BspPI GGATC 1 cut(s) 755
BspT107I GGYRCC 1 cut(s) 563
BsrDI GCAATG 2 cut(s) 265, 346
BsrI ACTGG 3 cut(s) 114, 244, 405
BssECI CCNNGG 2 cut(s) 118, 568
BssMI GATC 1 cut(s) 760
BssT1I CCWWGG 1 cut(s) 118
Bst2UI CCWGG 1 cut(s) 570
Bst6I CTCTTC 2 cut(s) 26, 611
BstC8I GCNNGC 1 cut(s) 562
BstDEI CTNAG 4 cut(s) 49, 371, 585, 765
BstDSI CCRYGG 1 cut(s) 118
BstKTI GATC 1 cut(s) 763
BstMAI GTCTC 2 cut(s) 28, 771
BstMBI GATC 1 cut(s) 760
BstMWI GCNNNNNNNGC 5 cut(s) 386, 389, 494, 803, 905
BstNI CCWGG 1 cut(s) 570
BstSCI CCNGG 1 cut(s) 568
BstV1I GCAGC 1 cut(s) 401
BstV2I GAAGAC 1 cut(s) 458
BsuI GTATCC 2 cut(s) 173, 566
BsuRI GGCC 4 cut(s) 243, 299, 507, 853
BtgI CCRYGG 1 cut(s) 118
Cac8I GCNNGC 1 cut(s) 562
Csp6I GTAC 2 cut(s) 155, 589
CviAII CATG 6 cut(s) 119, 274, 295, 704, 727, 859
CviQI GTAC 2 cut(s) 155, 589
DdeI CTNAG 4 cut(s) 49, 371, 585, 765
DpnI GATC 1 cut(s) 762
DpnII GATC 1 cut(s) 760
EaeI YGGCCR 1 cut(s) 297
Eam1104I CTCTTC 2 cut(s) 26, 611
EarI CTCTTC 2 cut(s) 26, 611
Eco130I CCWWGG 1 cut(s) 118
Eco32I GATATC 2 cut(s) 678, 745
EcoRII CCWGG 1 cut(s) 568
EcoRV GATATC 2 cut(s) 678, 745
EcoT14I CCWWGG 1 cut(s) 118
ErhI CCWWGG 1 cut(s) 118
FaeI CATG 6 cut(s) 122, 277, 298, 707, 730, 862
FatI CATG 6 cut(s) 118, 273, 294, 703, 726, 858
FauNDI CATATG 1 cut(s) 543
FblI GTMKAC 1 cut(s) 367
Fnu4HI GCNGC 2 cut(s) 381, 390
Fsp4HI GCNGC 2 cut(s) 381, 390
FspBI CTAG 1 cut(s) 663
GluI GCNGC 2 cut(s) 381, 390
GsuI CTGGAG 1 cut(s) 422
HaeIII GGCC 4 cut(s) 243, 299, 507, 853
HapII CCGG 1 cut(s) 846
Hin1II CATG 6 cut(s) 122, 277, 298, 707, 730, 862
HincII GTYRAC 3 cut(s) 368, 549, 843
HindII GTYRAC 3 cut(s) 368, 549, 843
HinfI GANTC 4 cut(s) 5, 23, 314, 879
HpaII CCGG 1 cut(s) 846
HphI GGTGA 2 cut(s) 341, 883
Hpy166II GTNNAC 4 cut(s) 115, 368, 549, 843
Hpy188I TCNGA 3 cut(s) 52, 81, 835
Hpy188III TCNNGA 4 cut(s) 311, 352, 513, 681
Hpy8I GTNNAC 4 cut(s) 115, 368, 549, 843
HpyAV CCTTC 4 cut(s) 257, 527, 796, 843
HpyCH4V TGCA 3 cut(s) 258, 389, 652
HpyF10VI GCNNNNNNNGC 5 cut(s) 386, 389, 494, 803, 905
HpyF3I CTNAG 4 cut(s) 49, 371, 585, 765
Hsp92II CATG 6 cut(s) 122, 277, 298, 707, 730, 862
Kzo9I GATC 1 cut(s) 760
LmnI GCTCC 2 cut(s) 728, 896
Lsp1109I GCAGC 1 cut(s) 401
LweI GCATC 2 cut(s) 328, 376
MaeI CTAG 1 cut(s) 663
MaeIII GTNAC 3 cut(s) 343, 768, 871
MalI GATC 1 cut(s) 762
MboI GATC 1 cut(s) 760
MboII GAAGA 5 cut(s) 43, 344, 401, 463, 628
MlsI TGGCCA 1 cut(s) 299
MluCI AATT 6 cut(s) 16, 38, 63, 84, 188, 478
MluNI TGGCCA 1 cut(s) 299
MlyI GAGTC 2 cut(s) 32, 873
MmeI TCCRAC 1 cut(s) 229
MnlI CCTC 5 cut(s) 46, 193, 293, 767, 859
Mox20I TGGCCA 1 cut(s) 299
MscI TGGCCA 1 cut(s) 299
MslI CAYNNNNRTG 3 cut(s) 123, 444, 542
Msp20I TGGCCA 1 cut(s) 299
MspA1I CMGCKG 1 cut(s) 554
MspI CCGG 1 cut(s) 846
MspR9I CCNGG 1 cut(s) 570
MvaI CCWGG 1 cut(s) 570
MwoI GCNNNNNNNGC 5 cut(s) 386, 389, 494, 803, 905
NcoI CCATGG 1 cut(s) 118
NdeI CATATG 1 cut(s) 543
NdeII GATC 1 cut(s) 760
NlaIII CATG 6 cut(s) 122, 277, 298, 707, 730, 862
NlaIV GGNNCC 1 cut(s) 565
NmuCI GTSAC 1 cut(s) 871
PfeI GAWTC 2 cut(s) 5, 314
PkrI GCNGC 2 cut(s) 382, 391
PleI GAGTC 2 cut(s) 31, 873
PpsI GAGTC 2 cut(s) 31, 873
Psp6I CCWGG 1 cut(s) 568
PspGI CCWGG 1 cut(s) 568
PspN4I GGNNCC 1 cut(s) 565
PvuII CAGCTG 1 cut(s) 554
RsaI GTAC 2 cut(s) 156, 590
RsaNI GTAC 2 cut(s) 155, 589
RseI CAYNNNNRTG 3 cut(s) 123, 444, 542
SalI GTCGAC 1 cut(s) 366
SatI GCNGC 2 cut(s) 381, 390
Sau3AI GATC 1 cut(s) 760
ScaI AGTACT 1 cut(s) 156
SchI GAGTC 2 cut(s) 32, 873
ScrFI CCNGG 1 cut(s) 570
SfaNI GCATC 2 cut(s) 328, 376
SmiMI CAYNNNNRTG 3 cut(s) 123, 444, 542
SmlI CTYRAG 1 cut(s) 138
SmoI CTYRAG 1 cut(s) 138
Sse9I AATT 6 cut(s) 16, 38, 63, 84, 188, 478
SsiI CCGC 1 cut(s) 380
SspI AATATT 1 cut(s) 463
SspMI CTAG 1 cut(s) 663
StyD4I CCNGG 1 cut(s) 568
StyI CCWWGG 1 cut(s) 118
TaqI TCGA 3 cut(s) 21, 367, 910
TasI AATT 6 cut(s) 16, 38, 63, 84, 188, 478
TatI WGTACW 1 cut(s) 154
TauI GCSGC 1 cut(s) 383
TfiI GAWTC 2 cut(s) 5, 314
TseFI GTSAC 1 cut(s) 871
TseI GCWGC 1 cut(s) 389
Tsp45I GTSAC 1 cut(s) 871
TspDTI ATGAA 3 cut(s) 212, 276, 933
XapI RAATTY 2 cut(s) 16, 478
XcmI CCANNNNNNNNNTGG 1 cut(s) 307
XmiI GTMKAC 1 cut(s) 367
XspI CTAG 1 cut(s) 663
ZrmI AGTACT 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.