MD09G1199500.v1.1

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Forward (+)
18261059 .. 18262114
1056 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1199500.v1.1.491

Sequence Viewer

Length: 675 bp
ATGTTGGCCAATTTGGATAATGAAAGTCCGACAGGCATTACCTATATTTCAGACGAAAACTTCGTAACCACTGGTGAACGGAAGTTGGTGTTGCCTGAATACAAAAACAAGTATTACCCGTCATACAACTCTCTTAGAAGCTTCCCTGAAGGAATCCGAAAGTGCTACAAAATAAATGTTACAAGTAAAACCAAGTATTTGATCAGAGCAGGTTTCTTTTATGGGAATTATGATGGACAAAATGAAGTACCCCAATTTGAGATACATCTTGGACCTAACTTGTGGGATGCATTGAACTGGTTGGGGAATTCGTCGGAAGCAAAATATACCGAGCTCATACATGTCCCTCTGCCAAACTATGTACATGTTTGTCTGGTGAAGACAGGCTCCCGGGTTCCATTTATATCTTCTATAGATGTCAGGCCTTTAACCGATGCCTCGTACAAAACAGTAAAAGGGTCCTTATCACTTCTCTGGCGTTATGACACTGGTCTAACAAATGACCATTGGGATTACAGGTATCCAGATGATATTCATGATCGAATCTGGAGTTACCTTGACGACCAGGGCTCTTGGACAAAATTAAATACCTCATCGACCATCAAATTCAGAATTCGAGTATCTACCACCATCCGTCGTGATGGGCACAGCTGCAACGCCGAAAAGTTCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

225

Amino Acids

25.99

Weight (kDa)

8.6

Isoelectric Point (pI)

33.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 7 - 202 2.9e-64 Malectin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000083)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07560 AT1G51790 AT1G51790 AT1G51790 AT1G51800 AT1G51805 AT1G51805 AT1G51810 AT1G51820 AT1G51820 AT1G51830 AT1G51830 AT1G51840 AT1G51840 AT1G51840 AT1G51840 AT1G51840 AT1G51850 AT1G51850 AT1G51860 AT1G51860 AT1G51870 AT1G51870 AT1G51880 AT1G51880 AT1G51880 AT1G51890 AT1G51890 AT1G51890 AT1G51890 AT1G51890 AT1G51910 AT2G04300 AT2G04300 AT2G28960 AT2G28960 AT2G28970 AT2G28970 AT2G28990 AT2G28990 AT2G29000 AT3G21340 AT3G46350 AT5G59616 AT5G59650 AT5G59650 AT5G59660 AT5G59660 AT5G59660 AT5G59670 AT5G59670 AT5G59680
fragaria_vesca FvH4_2g03270 FvH4_3g21300 FvH4_6g32660 FvH4_6g32660 FvH4_6g32670 FvH4_6g32670 FvH4_6g32690 FvH4_6g32690 FvH4_6g32691 FvH4_6g32700 FvH4_6g32740 FvH4_6g32750 FvH4_6g33210 FvH4_6g33210 FvH4_7g24270 FvH4_7g24280 FvH4_7g24291 FvH4_7g24300
malus_domestica MD09G1198400.v1.1 MD09G1198600.v1.1 MD09G1199100.v1.1 MD09G1199200.v1.1 MD09G1199300.v1.1 MD09G1199500.v1.1 MD09G1199600.v1.1 MD17G1179300.v1.1 MD17G1180200.v1.1 MD17G1266000.v1.1
prunus_persica Prupe.1G438900_v2.0.a1 Prupe.1G439000_v2.0.a1 Prupe.1G439100_v2.0.a1 Prupe.3G019400_v2.0.a1 Prupe.3G021900_v2.0.a1 Prupe.3G054500_v2.0.a1 Prupe.3G054500_v2.0.a1 Prupe.3G055100_v2.0.a1 Prupe.3G055400_v2.0.a1 Prupe.3G055500_v2.0.a1 Prupe.3G055600_v2.0.a1 Prupe.3G055700_v2.0.a1 Prupe.3G055800_v2.0.a1 Prupe.3G055900_v2.0.a1 Prupe.3G055900_v2.0.a1 Prupe.3G056000_v2.0.a1 Prupe.3G056000_v2.0.a1 Prupe.3G056100_v2.0.a1 Prupe.3G209600_v2.0.a1 Prupe.3G209700_v2.0.a1 Prupe.6G291100_v2.0.a1 Prupe.7G208900_v2.0.a1 Prupe.8G038300_v2.0.a1
pyrus_communis pycom09g11570 pycom09g11580 pycom09g11610 pycom09g11630 pycom09g11640 pycom17g18840 pycom17g18910 pycom17g18930 pycom17g18940
rosa_chinensis RchiOBHm_Chr1g0317521 RchiOBHm_Chr1g0317541 RchiOBHm_Chr2g0123351 RchiOBHm_Chr2g0141181 RchiOBHm_Chr2g0141191 RchiOBHm_Chr2g0141211 RchiOBHm_Chr2g0141221 RchiOBHm_Chr2g0141261 RchiOBHm_Chr2g0141271 RchiOBHm_Chr2g0141311 RchiOBHm_Chr2g0141331 RchiOBHm_Chr2g0141371 RchiOBHm_Chr2g0141391 RchiOBHm_Chr2g0141401 RchiOBHm_Chr2g0141431 RchiOBHm_Chr2g0141481 RchiOBHm_Chr2g0141491 RchiOBHm_Chr2g0141591 RchiOBHm_Chr2g0141601 RchiOBHm_Chr2g0141611 RchiOBHm_Chr2g0141631 RchiOBHm_Chr2g0141641 RchiOBHm_Chr2g0141661 RchiOBHm_Chr2g0141681 RchiOBHm_Chr2g0141701 RchiOBHm_Chr2g0141781 RchiOBHm_Chr2g0141811 RchiOBHm_Chr2g0141821 RchiOBHm_Chr3g0479311 RchiOBHm_Chr3g0495751 RchiOBHm_Chr4g0404741 RchiOBHm_Chr4g0410341 RchiOBHm_Chr4g0418371 RchiOBHm_Chr4g0438651 RchiOBHm_Chr5g0036411 RchiOBHm_Chr5g0036491 RchiOBHm_Chr5g0042391 RchiOBHm_Chr6g0279871 RchiOBHm_Chr7g0192921 RchiOBHm_Chr7g0214901 RchiOBHm_Chr7g0234931
rosa_laevigata RLG00000003432 RLG00000008806 RLG00000013062 RLG00000019514 RLG00000019923 RLG00000019924 RLG00000019925 RLG00000019930 RLG00000019931 RLG00000019934 RLG00000019937 RLG00000019938 RLG00000033697
rosa_multiflora Rmu_co8002302.1_g000001 Rmu_sc0000147.1_g000031 Rmu_sc0000463.1_g000005 Rmu_sc0000712.1_g000003 Rmu_sc0001483.1_g000017 Rmu_sc0001554.1_g000002 Rmu_sc0001554.1_g000005 Rmu_sc0001554.1_g000008 Rmu_sc0001981.1_g000017 Rmu_sc0002040.1_g000056 Rmu_sc0002755.1_g000018 Rmu_sc0002804.1_g000016 Rmu_sc0002928.1_g000015 Rmu_sc0003040.1_g000008 Rmu_sc0003040.1_g000018 Rmu_sc0004512.1_g000001 Rmu_sc0004512.1_g000004 Rmu_sc0005507.1_g000001 Rmu_sc0005507.1_g000009 Rmu_sc0005507.1_g000033 Rmu_sc0005507.1_g000037 Rmu_sc0005507.1_g000043 Rmu_sc0005507.1_g000047 Rmu_sc0006318.1_g000004 Rmu_sc0006318.1_g000014 Rmu_sc0006318.1_g000021 Rmu_sc0006556.1_g000001 Rmu_sc0007208.1_g000002 Rmu_sc0007208.1_g000003 Rmu_sc0007208.1_g000006 Rmu_sc0007208.1_g000008
rosa_roxburghii Rroxscaffold_1G00044430 Rroxscaffold_2G00103420 Rroxscaffold_2G00103470 Rroxscaffold_2G00103490 Rroxscaffold_2G00103500 Rroxscaffold_2G00103520 Rroxscaffold_2G00103530 Rroxscaffold_2G00103540 Rroxscaffold_2G00103550 Rroxscaffold_2G00103570 Rroxscaffold_2G00103770 Rroxscaffold_2G00103780 Rroxscaffold_2G00103800 Rroxscaffold_2G00103820 Rroxscaffold_2G00103860 Rroxscaffold_2G00103890 Rroxscaffold_2G00103930 Rroxscaffold_2G00103940 Rroxscaffold_2G00104010 Rroxscaffold_2G00104030 Rroxscaffold_2G00104050 Rroxscaffold_2G00104060 Rroxscaffold_2G00104070 Rroxscaffold_2G00104090 Rroxscaffold_2G00104100 Rroxscaffold_2G00104120 Rroxscaffold_2G00104130 Rroxscaffold_4G00331710
rosa_rugosa Rorug02G0367500 Rorug02G0367500 Rorug02G0367600 Rorug02G0367800 Rorug02G0367800 Rorug02G0367900 Rorug02G0368100 Rorug02G0368100 Rorug02G0368100 Rorug02G0368200 Rorug02G0368700 Rorug02G0368900 Rorug05G0155600 Rorug05G0155700 Rorug05G0155800 Rorug05G0156700 Rorug05G0157300
rosa_samantha Rh1AG028000 Rh2AG418700 Rh2AG418900 Rh2AG419000 Rh2AG419100 Rh2AG419400 Rh2AG419600 Rh2AG419800 Rh2AG420400 Rh2AG421000 Rh2BG428500 Rh2BG428600 Rh2BG428800 Rh2BG428900 Rh2BG429300 Rh2BG429400 Rh2BG429700 Rh2BG429900 Rh2BG430000 Rh2BG430700 Rh2CG405100 Rh2CG405200 Rh2CG405300 Rh2CG405500 Rh2CG405600 Rh2CG405700 Rh2CG406000 Rh2CG406100 Rh2CG406300 Rh2CG406600 Rh2CG406700 Rh2CG407500 Rh2CG408100 Rh2DG438500 Rh3DG123900 Rh3DG124000 Rh5BG249700 Rh5BG482500 Rh5CG281500 Rh5CG507300 Rh7DG133300
rosa_wichuraiana Rw0G019720 Rw0G019730 Rw0G019750 Rw0G023010 Rw2G034340 Rw2G034350 Rw2G034370 Rw2G034380 Rw2G034400 Rw2G034430 Rw2G034470 Rw2G034480 Rw2G034510 Rw5G022890 Rw5G026410 Rw5G032710 Rw5G042850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 200
AcoI YGGCCR 1 cut(s) 6
AcsI RAATTY 3 cut(s) 307, 605, 612
AcuI CTGAAG 1 cut(s) 168
AfaI GTAC 3 cut(s) 249, 363, 443
AflIII ACRYGT 2 cut(s) 340, 364
AgsI TTSAA 2 cut(s) 295, 670
AjnI CCWGG 1 cut(s) 564
AluBI AGCT 3 cut(s) 141, 334, 651
AluI AGCT 3 cut(s) 141, 334, 651
Alw21I GWGCWC 1 cut(s) 336
Ama87I CYCGRG 1 cut(s) 390
AoxI GGCC 2 cut(s) 6, 422
ApeKI GCWGC 1 cut(s) 651
ApoI RAATTY 3 cut(s) 307, 605, 612
ArsI GACNNNNNNTTYG 2 cut(s) 44, 76
AspS9I GGNCC 2 cut(s) 272, 459
AsuC2I CCSGG 2 cut(s) 391, 392
AsuHPI GGTGA 2 cut(s) 86, 388
AvaI CYCGRG 1 cut(s) 390
AvaII GGWCC 2 cut(s) 272, 459
BaeGI GKGCMC 1 cut(s) 648
BalI TGGCCA 1 cut(s) 8
BanII GRGCYC 2 cut(s) 336, 572
BbsI GAAGAC 1 cut(s) 386
Bbv12I GWGCWC 1 cut(s) 336
BbvI GCAGC 1 cut(s) 638
BccI CCATC 4 cut(s) 227, 608, 635, 638
BciT130I CCWGG 1 cut(s) 566
BciVI GTATCC 1 cut(s) 531
BclI TGATCA 1 cut(s) 201
BcnI CCSGG 2 cut(s) 391, 392
BfmI CTRYAG 1 cut(s) 411
BfuAI ACCTGC 1 cut(s) 200
BfuI GTATCC 1 cut(s) 531
BisI GCNGC 1 cut(s) 652
BlsI GCNGC 1 cut(s) 653
Bme1390I CCNGG 3 cut(s) 391, 392, 566
Bme18I GGWCC 2 cut(s) 272, 459
BmeT110I CYCGRG 1 cut(s) 390
BmgT120I GGNCC 2 cut(s) 272, 459
BmiI GGNNCC 3 cut(s) 388, 396, 460
BmrFI CCNGG 3 cut(s) 391, 392, 566
BmsI GCATC 2 cut(s) 277, 424
BoxI GACNNNNGTC 1 cut(s) 489
BpiI GAAGAC 1 cut(s) 386
BpmI CTGGAG 1 cut(s) 568
BpuMI CCSGG 2 cut(s) 391, 392
BsaJI CCNNGG 2 cut(s) 390, 565
Bse1I ACTGG 3 cut(s) 76, 302, 493
BseBI CCWGG 1 cut(s) 566
BseDI CCNNGG 2 cut(s) 390, 565
BseGI GGATG 2 cut(s) 292, 630
BseNI ACTGG 3 cut(s) 76, 302, 493
BseSI GKGCMC 1 cut(s) 648
BseXI GCAGC 1 cut(s) 638
BshFI GGCC 2 cut(s) 8, 424
BsiHKAI GWGCWC 1 cut(s) 336
BsiHKCI CYCGRG 1 cut(s) 390
BsiSI CCGG 1 cut(s) 391
BslFI GGGAC 1 cut(s) 329
BsmFI GGGAC 1 cut(s) 329
BsnI GGCC 2 cut(s) 8, 424
BsoBI CYCGRG 1 cut(s) 390
Bsp1286I GDGCHC 3 cut(s) 336, 572, 648
Bsp1407I TGTACA 1 cut(s) 361
Bsp143I GATC 2 cut(s) 201, 538
BspANI GGCC 2 cut(s) 8, 424
BspHI TCATGA 1 cut(s) 535
BspLI GGNNCC 3 cut(s) 388, 396, 460
BspMI ACCTGC 1 cut(s) 200
BsrGI TGTACA 1 cut(s) 361
BsrI ACTGG 3 cut(s) 76, 302, 493
BssECI CCNNGG 2 cut(s) 390, 565
BssMI GATC 2 cut(s) 201, 538
Bst2UI CCWGG 1 cut(s) 566
Bst4CI ACNGT 1 cut(s) 451
BstAUI TGTACA 1 cut(s) 361
BstDEI CTNAG 1 cut(s) 134
BstF5I GGATG 2 cut(s) 292, 630
BstKTI GATC 2 cut(s) 204, 541
BstMBI GATC 2 cut(s) 201, 538
BstNI CCWGG 1 cut(s) 566
BstNSI RCATGY 2 cut(s) 344, 368
BstPAI GACNNNNGTC 1 cut(s) 489
BstSCI CCNGG 3 cut(s) 389, 390, 564
BstSFI CTRYAG 1 cut(s) 411
BstSLI GKGCMC 1 cut(s) 648
BstV1I GCAGC 1 cut(s) 638
BstV2I GAAGAC 1 cut(s) 386
BsuI GTATCC 1 cut(s) 531
BsuRI GGCC 2 cut(s) 8, 424
BtsCI GGATG 2 cut(s) 292, 630
BtsIMutI CAGTG 2 cut(s) 69, 486
BveI ACCTGC 1 cut(s) 200
CciI TCATGA 1 cut(s) 535
Cfr13I GGNCC 2 cut(s) 272, 459
Cfr9I CCCGGG 1 cut(s) 390
Csp6I GTAC 3 cut(s) 248, 362, 442
CviAII CATG 3 cut(s) 341, 365, 536
CviJI RGCY 7 cut(s) 8, 141, 334, 387, 424, 570, 651
CviKI_1 RGCY 7 cut(s) 8, 141, 334, 387, 424, 570, 651
CviQI GTAC 3 cut(s) 248, 362, 442
DdeI CTNAG 1 cut(s) 134
DpnI GATC 2 cut(s) 203, 540
DpnII GATC 2 cut(s) 201, 538
EaeI YGGCCR 1 cut(s) 6
Ecl136II GAGCTC 1 cut(s) 334
Eco147I AGGCCT 1 cut(s) 424
Eco24I GRGCYC 2 cut(s) 336, 572
Eco47I GGWCC 2 cut(s) 272, 459
Eco53kI GAGCTC 1 cut(s) 334
Eco57I CTGAAG 1 cut(s) 168
Eco88I CYCGRG 1 cut(s) 390
EcoICRI GAGCTC 1 cut(s) 334
EcoO109I RGGNCCY 1 cut(s) 459
EcoRI GAATTC 2 cut(s) 307, 612
EcoRII CCWGG 1 cut(s) 564
EcoT22I ATGCAT 1 cut(s) 292
EcoT38I GRGCYC 2 cut(s) 336, 572
FaeI CATG 3 cut(s) 344, 368, 539
FaqI GGGAC 1 cut(s) 329
FatI CATG 3 cut(s) 340, 364, 535
FbaI TGATCA 1 cut(s) 201
Fnu4HI GCNGC 1 cut(s) 652
FokI GGATG 2 cut(s) 299, 617
FriOI GRGCYC 2 cut(s) 336, 572
Fsp4HI GCNGC 1 cut(s) 652
GluI GCNGC 1 cut(s) 652
GsuI CTGGAG 1 cut(s) 568
HaeIII GGCC 2 cut(s) 8, 424
HapII CCGG 1 cut(s) 391
Hin1II CATG 3 cut(s) 344, 368, 539
HindIII AAGCTT 1 cut(s) 139
HinfI GANTC 2 cut(s) 153, 543
HpaII CCGG 1 cut(s) 391
HphI GGTGA 2 cut(s) 86, 388
Hpy166II GTNNAC 1 cut(s) 77
Hpy188I TCNGA 6 cut(s) 30, 52, 158, 206, 316, 611
Hpy188III TCNNGA 4 cut(s) 524, 536, 547, 638
Hpy8I GTNNAC 1 cut(s) 77
Hpy99I CGWCG 2 cut(s) 316, 639
HpyAV CCTTC 1 cut(s) 143
HpyCH4III ACNGT 1 cut(s) 451
HpyCH4V TGCA 2 cut(s) 290, 654
HpyF3I CTNAG 1 cut(s) 134
Hsp92II CATG 3 cut(s) 344, 368, 539
Ksp22I TGATCA 1 cut(s) 201
Kzo9I GATC 2 cut(s) 201, 538
LmnI GCTCC 1 cut(s) 392
Lsp1109I GCAGC 1 cut(s) 638
LweI GCATC 2 cut(s) 277, 424
MaeIII GTNAC 3 cut(s) 64, 178, 551
MalI GATC 2 cut(s) 203, 540
MboI GATC 2 cut(s) 201, 538
MboII GAAGA 2 cut(s) 391, 399
MhlI GDGCHC 3 cut(s) 336, 572, 648
MlsI TGGCCA 1 cut(s) 8
MluCI AATT 7 cut(s) 10, 226, 254, 307, 581, 605, 612
MluNI TGGCCA 1 cut(s) 8
MmeI TCCRAC 2 cut(s) 53, 294
MnlI CCTC 3 cut(s) 357, 448, 601
Mox20I TGGCCA 1 cut(s) 8
Mph1103I ATGCAT 1 cut(s) 292
MscI TGGCCA 1 cut(s) 8
MseI TTAA 2 cut(s) 428, 584
Msp20I TGGCCA 1 cut(s) 8
MspA1I CMGCKG 1 cut(s) 651
MspI CCGG 1 cut(s) 391
MspR9I CCNGG 3 cut(s) 391, 392, 566
MvaI CCWGG 1 cut(s) 566
NciI CCSGG 2 cut(s) 391, 392
NdeII GATC 2 cut(s) 201, 538
NlaIII CATG 3 cut(s) 344, 368, 539
NlaIV GGNNCC 3 cut(s) 388, 396, 460
NsiI ATGCAT 1 cut(s) 292
NspI RCATGY 2 cut(s) 344, 368
PagI TCATGA 1 cut(s) 535
PceI AGGCCT 1 cut(s) 424
PciI ACATGT 2 cut(s) 340, 364
PcsI WCGNNNNNNNCGW 1 cut(s) 60
PfeI GAWTC 2 cut(s) 153, 543
PkrI GCNGC 1 cut(s) 653
PpuMI RGGWCCY 1 cut(s) 459
PscI ACATGT 2 cut(s) 340, 364
PshAI GACNNNNGTC 1 cut(s) 489
Psp124BI GAGCTC 1 cut(s) 336
Psp5II RGGWCCY 1 cut(s) 459
Psp6I CCWGG 1 cut(s) 564
PspGI CCWGG 1 cut(s) 564
PspN4I GGNNCC 3 cut(s) 388, 396, 460
PspPI GGNCC 2 cut(s) 272, 459
PspPPI RGGWCCY 1 cut(s) 459
PvuII CAGCTG 1 cut(s) 651
RsaI GTAC 3 cut(s) 249, 363, 443
RsaNI GTAC 3 cut(s) 248, 362, 442
SacI GAGCTC 1 cut(s) 336
SaqAI TTAA 2 cut(s) 428, 584
SatI GCNGC 1 cut(s) 652
Sau3AI GATC 2 cut(s) 201, 538
Sau96I GGNCC 2 cut(s) 272, 459
ScrFI CCNGG 3 cut(s) 391, 392, 566
SduI GDGCHC 3 cut(s) 336, 572, 648
SetI ASST 9 cut(s) 44, 143, 214, 277, 336, 521, 558, 593, 653
SfaNI GCATC 2 cut(s) 277, 424
SfcI CTRYAG 1 cut(s) 411
SinI GGWCC 2 cut(s) 272, 459
SmaI CCCGGG 1 cut(s) 392
Sse9I AATT 7 cut(s) 10, 226, 254, 307, 581, 605, 612
SseBI AGGCCT 1 cut(s) 424
SstI GAGCTC 1 cut(s) 336
StuI AGGCCT 1 cut(s) 424
StyD4I CCNGG 3 cut(s) 389, 390, 564
TaaI ACNGT 1 cut(s) 451
TaqI TCGA 3 cut(s) 541, 596, 616
TasI AATT 7 cut(s) 10, 226, 254, 307, 581, 605, 612
TatI WGTACW 1 cut(s) 361
TfiI GAWTC 2 cut(s) 153, 543
Tru1I TTAA 2 cut(s) 428, 584
Tru9I TTAA 2 cut(s) 428, 584
TscAI CASTG 2 cut(s) 76, 493
TseI GCWGC 1 cut(s) 651
TspDTI ATGAA 3 cut(s) 36, 258, 524
TspGWI ACGGA 2 cut(s) 94, 623
TspMI CCCGGG 1 cut(s) 390
TspRI CASTG 2 cut(s) 76, 493
VpaK11BI GGWCC 2 cut(s) 272, 459
XapI RAATTY 3 cut(s) 307, 605, 612
XceI RCATGY 2 cut(s) 344, 368
XmaI CCCGGG 1 cut(s) 390
Zsp2I ATGCAT 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.