Rh2CG405600

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000083
Physical Location & Seq
Reverse (-)
55212147 .. 55212726
580 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG405600.1

Sequence Viewer

Length: 375 bp
ATGGTTTGGCTTTGCTGCAGGTACTACCTAACAAGCAGGTTAAATGAGAAAAGTGATGTTTATAGCTTTGGGATTGTGCTGTTGGAAATTATCACAAGCCGACCTGTTATATCAGGAACTGTTGAGAGAATTCACATTAGTGATCAATGGGTTGCTTCCATGCTTGCGCAAGGAGACATTTATAGTATTGTTGATCCAAGATTAGGGAGAAATTTCAATGCTAACTGTGTGTGGAAAGTTTTGGAGATAGCAATGGCATGTATATCTCCAGACCCCGTCAAAAGGCCAATGATGAGTCAGGTAGTGATGGAACTGAAGGAGTGTTTGGCAACAGAACTGGCTCGAACAAGCAGAGAAGAAATGAAACTGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

124

Amino Acids

14.17

Weight (kDa)

6.57

Isoelectric Point (pI)

43.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 3 - 105 8.6e-09 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000083)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07560 AT1G51790 AT1G51790 AT1G51790 AT1G51800 AT1G51805 AT1G51805 AT1G51810 AT1G51820 AT1G51820 AT1G51830 AT1G51830 AT1G51840 AT1G51840 AT1G51840 AT1G51840 AT1G51840 AT1G51850 AT1G51850 AT1G51860 AT1G51860 AT1G51870 AT1G51870 AT1G51880 AT1G51880 AT1G51880 AT1G51890 AT1G51890 AT1G51890 AT1G51890 AT1G51890 AT1G51910 AT2G04300 AT2G04300 AT2G28960 AT2G28960 AT2G28970 AT2G28970 AT2G28990 AT2G28990 AT2G29000 AT3G21340 AT3G46350 AT5G59616 AT5G59650 AT5G59650 AT5G59660 AT5G59660 AT5G59660 AT5G59670 AT5G59670 AT5G59680
fragaria_vesca FvH4_2g03270 FvH4_3g21300 FvH4_6g32660 FvH4_6g32660 FvH4_6g32670 FvH4_6g32670 FvH4_6g32690 FvH4_6g32690 FvH4_6g32691 FvH4_6g32700 FvH4_6g32740 FvH4_6g32750 FvH4_6g33210 FvH4_6g33210 FvH4_7g24270 FvH4_7g24280 FvH4_7g24291 FvH4_7g24300
malus_domestica MD09G1198400.v1.1 MD09G1198600.v1.1 MD09G1199100.v1.1 MD09G1199200.v1.1 MD09G1199300.v1.1 MD09G1199500.v1.1 MD09G1199600.v1.1 MD17G1179300.v1.1 MD17G1180200.v1.1 MD17G1266000.v1.1
prunus_persica Prupe.1G438900_v2.0.a1 Prupe.1G439000_v2.0.a1 Prupe.1G439100_v2.0.a1 Prupe.3G019400_v2.0.a1 Prupe.3G021900_v2.0.a1 Prupe.3G054500_v2.0.a1 Prupe.3G054500_v2.0.a1 Prupe.3G055100_v2.0.a1 Prupe.3G055400_v2.0.a1 Prupe.3G055500_v2.0.a1 Prupe.3G055600_v2.0.a1 Prupe.3G055700_v2.0.a1 Prupe.3G055800_v2.0.a1 Prupe.3G055900_v2.0.a1 Prupe.3G055900_v2.0.a1 Prupe.3G056000_v2.0.a1 Prupe.3G056000_v2.0.a1 Prupe.3G056100_v2.0.a1 Prupe.3G209600_v2.0.a1 Prupe.3G209700_v2.0.a1 Prupe.6G291100_v2.0.a1 Prupe.7G208900_v2.0.a1 Prupe.8G038300_v2.0.a1
pyrus_communis pycom09g11570 pycom09g11580 pycom09g11610 pycom09g11630 pycom09g11640 pycom17g18840 pycom17g18910 pycom17g18930 pycom17g18940
rosa_chinensis RchiOBHm_Chr1g0317521 RchiOBHm_Chr1g0317541 RchiOBHm_Chr2g0123351 RchiOBHm_Chr2g0141181 RchiOBHm_Chr2g0141191 RchiOBHm_Chr2g0141211 RchiOBHm_Chr2g0141221 RchiOBHm_Chr2g0141261 RchiOBHm_Chr2g0141271 RchiOBHm_Chr2g0141311 RchiOBHm_Chr2g0141331 RchiOBHm_Chr2g0141371 RchiOBHm_Chr2g0141391 RchiOBHm_Chr2g0141401 RchiOBHm_Chr2g0141431 RchiOBHm_Chr2g0141481 RchiOBHm_Chr2g0141491 RchiOBHm_Chr2g0141591 RchiOBHm_Chr2g0141601 RchiOBHm_Chr2g0141611 RchiOBHm_Chr2g0141631 RchiOBHm_Chr2g0141641 RchiOBHm_Chr2g0141661 RchiOBHm_Chr2g0141681 RchiOBHm_Chr2g0141701 RchiOBHm_Chr2g0141781 RchiOBHm_Chr2g0141811 RchiOBHm_Chr2g0141821 RchiOBHm_Chr3g0479311 RchiOBHm_Chr3g0495751 RchiOBHm_Chr4g0404741 RchiOBHm_Chr4g0410341 RchiOBHm_Chr4g0418371 RchiOBHm_Chr4g0438651 RchiOBHm_Chr5g0036411 RchiOBHm_Chr5g0036491 RchiOBHm_Chr5g0042391 RchiOBHm_Chr6g0279871 RchiOBHm_Chr7g0192921 RchiOBHm_Chr7g0214901 RchiOBHm_Chr7g0234931
rosa_laevigata RLG00000003432 RLG00000008806 RLG00000013062 RLG00000019514 RLG00000019923 RLG00000019924 RLG00000019925 RLG00000019930 RLG00000019931 RLG00000019934 RLG00000019937 RLG00000019938 RLG00000033697
rosa_multiflora Rmu_co8002302.1_g000001 Rmu_sc0000147.1_g000031 Rmu_sc0000463.1_g000005 Rmu_sc0000712.1_g000003 Rmu_sc0001483.1_g000017 Rmu_sc0001554.1_g000002 Rmu_sc0001554.1_g000005 Rmu_sc0001554.1_g000008 Rmu_sc0001981.1_g000017 Rmu_sc0002040.1_g000056 Rmu_sc0002755.1_g000018 Rmu_sc0002804.1_g000016 Rmu_sc0002928.1_g000015 Rmu_sc0003040.1_g000008 Rmu_sc0003040.1_g000018 Rmu_sc0004512.1_g000001 Rmu_sc0004512.1_g000004 Rmu_sc0005507.1_g000001 Rmu_sc0005507.1_g000009 Rmu_sc0005507.1_g000033 Rmu_sc0005507.1_g000037 Rmu_sc0005507.1_g000043 Rmu_sc0005507.1_g000047 Rmu_sc0006318.1_g000004 Rmu_sc0006318.1_g000014 Rmu_sc0006318.1_g000021 Rmu_sc0006556.1_g000001 Rmu_sc0007208.1_g000002 Rmu_sc0007208.1_g000003 Rmu_sc0007208.1_g000006 Rmu_sc0007208.1_g000008
rosa_roxburghii Rroxscaffold_1G00044430 Rroxscaffold_2G00103420 Rroxscaffold_2G00103470 Rroxscaffold_2G00103490 Rroxscaffold_2G00103500 Rroxscaffold_2G00103520 Rroxscaffold_2G00103530 Rroxscaffold_2G00103540 Rroxscaffold_2G00103550 Rroxscaffold_2G00103570 Rroxscaffold_2G00103770 Rroxscaffold_2G00103780 Rroxscaffold_2G00103800 Rroxscaffold_2G00103820 Rroxscaffold_2G00103860 Rroxscaffold_2G00103890 Rroxscaffold_2G00103930 Rroxscaffold_2G00103940 Rroxscaffold_2G00104010 Rroxscaffold_2G00104030 Rroxscaffold_2G00104050 Rroxscaffold_2G00104060 Rroxscaffold_2G00104070 Rroxscaffold_2G00104090 Rroxscaffold_2G00104100 Rroxscaffold_2G00104120 Rroxscaffold_2G00104130 Rroxscaffold_4G00331710
rosa_rugosa Rorug02G0367500 Rorug02G0367500 Rorug02G0367600 Rorug02G0367800 Rorug02G0367800 Rorug02G0367900 Rorug02G0368100 Rorug02G0368100 Rorug02G0368100 Rorug02G0368200 Rorug02G0368700 Rorug02G0368900 Rorug05G0155600 Rorug05G0155700 Rorug05G0155800 Rorug05G0156700 Rorug05G0157300
rosa_samantha Rh1AG028000 Rh2AG418700 Rh2AG418900 Rh2AG419000 Rh2AG419100 Rh2AG419400 Rh2AG419600 Rh2AG419800 Rh2AG420400 Rh2AG421000 Rh2BG428500 Rh2BG428600 Rh2BG428800 Rh2BG428900 Rh2BG429300 Rh2BG429400 Rh2BG429700 Rh2BG429900 Rh2BG430000 Rh2BG430700 Rh2CG405100 Rh2CG405200 Rh2CG405300 Rh2CG405500 Rh2CG405600 Rh2CG405700 Rh2CG406000 Rh2CG406100 Rh2CG406300 Rh2CG406600 Rh2CG406700 Rh2CG407500 Rh2CG408100 Rh2DG438500 Rh3DG123900 Rh3DG124000 Rh5BG249700 Rh5BG482500 Rh5CG281500 Rh5CG507300 Rh7DG133300
rosa_wichuraiana Rw0G019720 Rw0G019730 Rw0G019750 Rw0G023010 Rw2G034340 Rw2G034350 Rw2G034370 Rw2G034380 Rw2G034400 Rw2G034430 Rw2G034470 Rw2G034480 Rw2G034510 Rw5G022890 Rw5G026410 Rw5G032710 Rw5G042850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 168
Acc36I ACCTGC 2 cut(s) 9, 27
AclWI GGATC 1 cut(s) 188
AcsI RAATTY 2 cut(s) 129, 211
AcuI CTGAAG 1 cut(s) 335
AfaI GTAC 1 cut(s) 23
AfiI CCNNNNNNNGG 2 cut(s) 203, 282
AgsI TTSAA 1 cut(s) 217
AjuI GAANNNNNNNTTGG 2 cut(s) 308, 340
AleI CACNNNNGTG 1 cut(s) 138
AluBI AGCT 1 cut(s) 66
AluI AGCT 1 cut(s) 66
Alw26I GTCTC 1 cut(s) 168
AlwI GGATC 1 cut(s) 188
AlwNI CAGNNNCTG 1 cut(s) 119
AoxI GGCC 1 cut(s) 284
ApeKI GCWGC 1 cut(s) 15
ApoI RAATTY 2 cut(s) 129, 211
AspLEI GCGC 1 cut(s) 169
BbvI GCAGC 1 cut(s) 2
BccI CCATC 1 cut(s) 301
BclI TGATCA 1 cut(s) 142
BcoDI GTCTC 1 cut(s) 168
BfmI CTRYAG 1 cut(s) 16
BfuAI ACCTGC 2 cut(s) 9, 27
BisI GCNGC 1 cut(s) 16
BlsI GCNGC 1 cut(s) 17
BpmI CTGGAG 1 cut(s) 252
Bsc4I CCNNNNNNNGG 2 cut(s) 203, 282
Bse1I ACTGG 2 cut(s) 342, 372
Bse3DI GCAATG 1 cut(s) 258
BseLI CCNNNNNNNGG 2 cut(s) 203, 282
BseMI GCAATG 1 cut(s) 258
BseNI ACTGG 2 cut(s) 342, 372
BseXI GCAGC 1 cut(s) 2
BshFI GGCC 1 cut(s) 286
BslI CCNNNNNNNGG 2 cut(s) 203, 282
BsmAI GTCTC 1 cut(s) 168
BsnI GGCC 1 cut(s) 286
Bsp143I GATC 2 cut(s) 142, 193
BspANI GGCC 1 cut(s) 286
BspMAI CTGCAG 1 cut(s) 20
BspMI ACCTGC 2 cut(s) 9, 27
BspPI GGATC 1 cut(s) 188
BsrDI GCAATG 1 cut(s) 258
BsrI ACTGG 2 cut(s) 342, 372
BssMI GATC 2 cut(s) 142, 193
Bst4CI ACNGT 2 cut(s) 121, 227
BstC8I GCNNGC 1 cut(s) 165
BstHHI GCGC 1 cut(s) 169
BstKTI GATC 2 cut(s) 145, 196
BstMAI GTCTC 1 cut(s) 168
BstMBI GATC 2 cut(s) 142, 193
BstNSI RCATGY 1 cut(s) 261
BstSFI CTRYAG 1 cut(s) 16
BstV1I GCAGC 1 cut(s) 2
BsuRI GGCC 1 cut(s) 286
BveI ACCTGC 2 cut(s) 9, 27
Cac8I GCNNGC 1 cut(s) 165
CaiI CAGNNNCTG 1 cut(s) 119
CfoI GCGC 1 cut(s) 169
Csp6I GTAC 1 cut(s) 22
CviAII CATG 2 cut(s) 160, 258
CviJI RGCY 5 cut(s) 10, 66, 99, 286, 341
CviKI_1 RGCY 5 cut(s) 10, 66, 99, 286, 341
CviQI GTAC 1 cut(s) 22
DpnI GATC 2 cut(s) 144, 195
DpnII GATC 2 cut(s) 142, 193
Eco57I CTGAAG 1 cut(s) 335
EcoRI GAATTC 1 cut(s) 129
FaeI CATG 2 cut(s) 163, 261
FaiI YATR 6 cut(s) 63, 110, 161, 183, 259, 263
FatI CATG 2 cut(s) 159, 257
FbaI TGATCA 1 cut(s) 142
Fnu4HI GCNGC 1 cut(s) 16
Fsp4HI GCNGC 1 cut(s) 16
FspI TGCGCA 1 cut(s) 168
GlaI GCGC 1 cut(s) 168
GluI GCNGC 1 cut(s) 16
GsuI CTGGAG 1 cut(s) 252
HaeIII GGCC 1 cut(s) 286
HhaI GCGC 1 cut(s) 169
Hin1II CATG 2 cut(s) 163, 261
Hin6I GCGC 1 cut(s) 167
HinP1I GCGC 1 cut(s) 167
HinfI GANTC 1 cut(s) 295
Hpy188III TCNNGA 2 cut(s) 114, 269
HpyAV CCTTC 1 cut(s) 310
HpyCH4III ACNGT 2 cut(s) 121, 227
HpyCH4V TGCA 1 cut(s) 18
Hsp92II CATG 2 cut(s) 163, 261
HspAI GCGC 1 cut(s) 167
Ksp22I TGATCA 1 cut(s) 142
Kzo9I GATC 2 cut(s) 142, 193
LpnPI CCDG 8 cut(s) 4, 22, 99, 117, 282, 284, 323, 353
Lsp1109I GCAGC 1 cut(s) 2
MalI GATC 2 cut(s) 144, 195
MboI GATC 2 cut(s) 142, 193
MboII GAAGA 1 cut(s) 368
MluCI AATT 3 cut(s) 87, 129, 211
MlyI GAGTC 1 cut(s) 304
MmeI TCCRAC 1 cut(s) 63
MseI TTAA 1 cut(s) 41
MslI CAYNNNNRTG 1 cut(s) 138
NdeII GATC 2 cut(s) 142, 193
NlaIII CATG 2 cut(s) 163, 261
NsbI TGCGCA 1 cut(s) 168
NspI RCATGY 1 cut(s) 261
OliI CACNNNNGTG 1 cut(s) 138
PflFI GACNNNGTC 1 cut(s) 275
PkrI GCNGC 1 cut(s) 17
PleI GAGTC 1 cut(s) 303
PpsI GAGTC 1 cut(s) 303
PstI CTGCAG 1 cut(s) 20
PstNI CAGNNNCTG 1 cut(s) 119
PsyI GACNNNGTC 1 cut(s) 275
RsaI GTAC 1 cut(s) 23
RsaNI GTAC 1 cut(s) 22
RseI CAYNNNNRTG 1 cut(s) 138
SaqAI TTAA 1 cut(s) 41
SatI GCNGC 1 cut(s) 16
Sau3AI GATC 2 cut(s) 142, 193
SchI GAGTC 1 cut(s) 304
SetI ASST 6 cut(s) 23, 30, 41, 68, 106, 303
SfcI CTRYAG 1 cut(s) 16
SmiMI CAYNNNNRTG 1 cut(s) 138
Sse9I AATT 3 cut(s) 87, 129, 211
TaaI ACNGT 2 cut(s) 121, 227
TaqI TCGA 1 cut(s) 343
TasI AATT 3 cut(s) 87, 129, 211
Tru1I TTAA 1 cut(s) 41
Tru9I TTAA 1 cut(s) 41
TseI GCWGC 1 cut(s) 15
Tth111I GACNNNGTC 1 cut(s) 275
XapI RAATTY 2 cut(s) 129, 211
XceI RCATGY 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.