RchiOBHm_Chr2g0141311

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
58873069 .. 58874602
1534 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51161

Sequence Viewer

Length: 798 bp
ATGGATCATTGTGAGCTGGTTAATCTTCTTATGAGGGTTCATCATACAAACTTGACTAGCCTTATAGGATATTGTGATGATGAAAACAACAAAGGACTCGTTTATGAGTACATGGCCAGGGGAAACTTACAAGAATATCTTTCAGATAAAAGTTCAAATGTCTTGACTTGGGACGGTAGACTTCAAGTAGCAACAGACGCTGCACAAGGATTGGAGTATCTACACTATGCTTGTAAACCTCCTATGATCCATAGGGATGTGAAAACAACAAACATCTTGCTATCAAAAAATTTCCAAGCCAAACTCTCTGATTTTGGCCTCTCTAGAAATTTCCCTGCAGGCGATGGGACTCATATAGTTACAGGTGTTGCTGGAACCCCTGGCTACCTAGCACCCGAGTATAAACAACTAAACAGGTTCAATGAGAAGAGTGACGTCTATAGCTTTGGGGTTGTACTGCTGGAGATTATCACAGGTAGACCTGCTGTTTCGAGGACACGAGAGAGAATCGCCATCAATGAATGGGTTGGATCAATCATTCCAAAAGGAGACATTGACACTATTGTGGATCCGAGGTTAAAAGGAATATTCAATGTCAGCTCTGCCTGGAAAGTAGTGGAAATAGCAATGGCATGTGTCTCTCCAGAGGCCAATAAAAGGCCAACCATGAGTAAAGTTGTTGGAGAACTGAAGCAGTGTCTGGAAACACAACTGTCTCAAAGAAACCAGAGGAATTCCTTTGAGATTGTGTCTCACAATGGTTATTCGATCACTATGCTACGTCCCTCAGTTAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

265

Amino Acids

29.69

Weight (kDa)

8.22

Isoelectric Point (pI)

34.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 7 - 230 4.3e-38 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 8 - 227 1.7e-34 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000083)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07560 AT1G51790 AT1G51790 AT1G51790 AT1G51800 AT1G51805 AT1G51805 AT1G51810 AT1G51820 AT1G51820 AT1G51830 AT1G51830 AT1G51840 AT1G51840 AT1G51840 AT1G51840 AT1G51840 AT1G51850 AT1G51850 AT1G51860 AT1G51860 AT1G51870 AT1G51870 AT1G51880 AT1G51880 AT1G51880 AT1G51890 AT1G51890 AT1G51890 AT1G51890 AT1G51890 AT1G51910 AT2G04300 AT2G04300 AT2G28960 AT2G28960 AT2G28970 AT2G28970 AT2G28990 AT2G28990 AT2G29000 AT3G21340 AT3G46350 AT5G59616 AT5G59650 AT5G59650 AT5G59660 AT5G59660 AT5G59660 AT5G59670 AT5G59670 AT5G59680
fragaria_vesca FvH4_2g03270 FvH4_3g21300 FvH4_6g32660 FvH4_6g32660 FvH4_6g32670 FvH4_6g32670 FvH4_6g32690 FvH4_6g32690 FvH4_6g32691 FvH4_6g32700 FvH4_6g32740 FvH4_6g32750 FvH4_6g33210 FvH4_6g33210 FvH4_7g24270 FvH4_7g24280 FvH4_7g24291 FvH4_7g24300
malus_domestica MD09G1198400.v1.1 MD09G1198600.v1.1 MD09G1199100.v1.1 MD09G1199200.v1.1 MD09G1199300.v1.1 MD09G1199500.v1.1 MD09G1199600.v1.1 MD17G1179300.v1.1 MD17G1180200.v1.1 MD17G1266000.v1.1
prunus_persica Prupe.1G438900_v2.0.a1 Prupe.1G439000_v2.0.a1 Prupe.1G439100_v2.0.a1 Prupe.3G019400_v2.0.a1 Prupe.3G021900_v2.0.a1 Prupe.3G054500_v2.0.a1 Prupe.3G054500_v2.0.a1 Prupe.3G055100_v2.0.a1 Prupe.3G055400_v2.0.a1 Prupe.3G055500_v2.0.a1 Prupe.3G055600_v2.0.a1 Prupe.3G055700_v2.0.a1 Prupe.3G055800_v2.0.a1 Prupe.3G055900_v2.0.a1 Prupe.3G055900_v2.0.a1 Prupe.3G056000_v2.0.a1 Prupe.3G056000_v2.0.a1 Prupe.3G056100_v2.0.a1 Prupe.3G209600_v2.0.a1 Prupe.3G209700_v2.0.a1 Prupe.6G291100_v2.0.a1 Prupe.7G208900_v2.0.a1 Prupe.8G038300_v2.0.a1
pyrus_communis pycom09g11570 pycom09g11580 pycom09g11610 pycom09g11630 pycom09g11640 pycom17g18840 pycom17g18910 pycom17g18930 pycom17g18940
rosa_chinensis RchiOBHm_Chr1g0317521 RchiOBHm_Chr1g0317541 RchiOBHm_Chr2g0123351 RchiOBHm_Chr2g0141181 RchiOBHm_Chr2g0141191 RchiOBHm_Chr2g0141211 RchiOBHm_Chr2g0141221 RchiOBHm_Chr2g0141261 RchiOBHm_Chr2g0141271 RchiOBHm_Chr2g0141311 RchiOBHm_Chr2g0141331 RchiOBHm_Chr2g0141371 RchiOBHm_Chr2g0141391 RchiOBHm_Chr2g0141401 RchiOBHm_Chr2g0141431 RchiOBHm_Chr2g0141481 RchiOBHm_Chr2g0141491 RchiOBHm_Chr2g0141591 RchiOBHm_Chr2g0141601 RchiOBHm_Chr2g0141611 RchiOBHm_Chr2g0141631 RchiOBHm_Chr2g0141641 RchiOBHm_Chr2g0141661 RchiOBHm_Chr2g0141681 RchiOBHm_Chr2g0141701 RchiOBHm_Chr2g0141781 RchiOBHm_Chr2g0141811 RchiOBHm_Chr2g0141821 RchiOBHm_Chr3g0479311 RchiOBHm_Chr3g0495751 RchiOBHm_Chr4g0404741 RchiOBHm_Chr4g0410341 RchiOBHm_Chr4g0418371 RchiOBHm_Chr4g0438651 RchiOBHm_Chr5g0036411 RchiOBHm_Chr5g0036491 RchiOBHm_Chr5g0042391 RchiOBHm_Chr6g0279871 RchiOBHm_Chr7g0192921 RchiOBHm_Chr7g0214901 RchiOBHm_Chr7g0234931
rosa_laevigata RLG00000003432 RLG00000008806 RLG00000013062 RLG00000019514 RLG00000019923 RLG00000019924 RLG00000019925 RLG00000019930 RLG00000019931 RLG00000019934 RLG00000019937 RLG00000019938 RLG00000033697
rosa_multiflora Rmu_co8002302.1_g000001 Rmu_sc0000147.1_g000031 Rmu_sc0000463.1_g000005 Rmu_sc0000712.1_g000003 Rmu_sc0001483.1_g000017 Rmu_sc0001554.1_g000002 Rmu_sc0001554.1_g000005 Rmu_sc0001554.1_g000008 Rmu_sc0001981.1_g000017 Rmu_sc0002040.1_g000056 Rmu_sc0002755.1_g000018 Rmu_sc0002804.1_g000016 Rmu_sc0002928.1_g000015 Rmu_sc0003040.1_g000008 Rmu_sc0003040.1_g000018 Rmu_sc0004512.1_g000001 Rmu_sc0004512.1_g000004 Rmu_sc0005507.1_g000001 Rmu_sc0005507.1_g000009 Rmu_sc0005507.1_g000033 Rmu_sc0005507.1_g000037 Rmu_sc0005507.1_g000043 Rmu_sc0005507.1_g000047 Rmu_sc0006318.1_g000004 Rmu_sc0006318.1_g000014 Rmu_sc0006318.1_g000021 Rmu_sc0006556.1_g000001 Rmu_sc0007208.1_g000002 Rmu_sc0007208.1_g000003 Rmu_sc0007208.1_g000006 Rmu_sc0007208.1_g000008
rosa_roxburghii Rroxscaffold_1G00044430 Rroxscaffold_2G00103420 Rroxscaffold_2G00103470 Rroxscaffold_2G00103490 Rroxscaffold_2G00103500 Rroxscaffold_2G00103520 Rroxscaffold_2G00103530 Rroxscaffold_2G00103540 Rroxscaffold_2G00103550 Rroxscaffold_2G00103570 Rroxscaffold_2G00103770 Rroxscaffold_2G00103780 Rroxscaffold_2G00103800 Rroxscaffold_2G00103820 Rroxscaffold_2G00103860 Rroxscaffold_2G00103890 Rroxscaffold_2G00103930 Rroxscaffold_2G00103940 Rroxscaffold_2G00104010 Rroxscaffold_2G00104030 Rroxscaffold_2G00104050 Rroxscaffold_2G00104060 Rroxscaffold_2G00104070 Rroxscaffold_2G00104090 Rroxscaffold_2G00104100 Rroxscaffold_2G00104120 Rroxscaffold_2G00104130 Rroxscaffold_4G00331710
rosa_rugosa Rorug02G0367500 Rorug02G0367500 Rorug02G0367600 Rorug02G0367800 Rorug02G0367800 Rorug02G0367900 Rorug02G0368100 Rorug02G0368100 Rorug02G0368100 Rorug02G0368200 Rorug02G0368700 Rorug02G0368900 Rorug05G0155600 Rorug05G0155700 Rorug05G0155800 Rorug05G0156700 Rorug05G0157300
rosa_samantha Rh1AG028000 Rh2AG418700 Rh2AG418900 Rh2AG419000 Rh2AG419100 Rh2AG419400 Rh2AG419600 Rh2AG419800 Rh2AG420400 Rh2AG421000 Rh2BG428500 Rh2BG428600 Rh2BG428800 Rh2BG428900 Rh2BG429300 Rh2BG429400 Rh2BG429700 Rh2BG429900 Rh2BG430000 Rh2BG430700 Rh2CG405100 Rh2CG405200 Rh2CG405300 Rh2CG405500 Rh2CG405600 Rh2CG405700 Rh2CG406000 Rh2CG406100 Rh2CG406300 Rh2CG406600 Rh2CG406700 Rh2CG407500 Rh2CG408100 Rh2DG438500 Rh3DG123900 Rh3DG124000 Rh5BG249700 Rh5BG482500 Rh5CG281500 Rh5CG507300 Rh7DG133300
rosa_wichuraiana Rw0G019720 Rw0G019730 Rw0G019750 Rw0G023010 Rw2G034340 Rw2G034350 Rw2G034370 Rw2G034380 Rw2G034400 Rw2G034430 Rw2G034470 Rw2G034480 Rw2G034510 Rw5G022890 Rw5G026410 Rw5G032710 Rw5G042850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 438
Acc36I ACCTGC 1 cut(s) 490
AccI GTMKAC 2 cut(s) 178, 478
AclWI GGATC 5 cut(s) 12, 241, 538, 563, 576
AcoI YGGCCR 1 cut(s) 114
AcsI RAATTY 3 cut(s) 289, 328, 733
AcuI CTGAAG 1 cut(s) 710
AcyI GRCGYC 1 cut(s) 435
AfaI GTAC 2 cut(s) 110, 456
AfiI CCNNNNNNNGG 1 cut(s) 657
AgsI TTSAA 4 cut(s) 156, 185, 421, 592
AjnI CCWGG 3 cut(s) 116, 379, 605
AleI CACNNNNGTG 1 cut(s) 563
AluBI AGCT 3 cut(s) 16, 444, 600
AluI AGCT 3 cut(s) 16, 444, 600
Alw26I GTCTC 4 cut(s) 543, 643, 720, 756
AlwI GGATC 5 cut(s) 12, 241, 538, 563, 576
AlwNI CAGNNNCTG 2 cut(s) 200, 700
Ama87I CYCGRG 1 cut(s) 395
AoxI GGCC 4 cut(s) 114, 316, 648, 659
ApeKI GCWGC 1 cut(s) 200
ApoI RAATTY 3 cut(s) 289, 328, 733
AvaI CYCGRG 1 cut(s) 395
BalI TGGCCA 1 cut(s) 116
BamHI GGATCC 1 cut(s) 568
BauI CACGAG 1 cut(s) 498
BbvI GCAGC 1 cut(s) 187
BccI CCATC 2 cut(s) 338, 521
BcgI CGANNNNNNTGC 2 cut(s) 757, 791
BciT130I CCWGG 3 cut(s) 118, 381, 607
BcoDI GTCTC 4 cut(s) 543, 643, 720, 756
BfaI CTAG 3 cut(s) 57, 324, 389
BfmI CTRYAG 2 cut(s) 336, 439
BfuAI ACCTGC 1 cut(s) 490
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
Bme1390I CCNGG 3 cut(s) 118, 381, 607
BmeT110I CYCGRG 1 cut(s) 395
BmiI GGNNCC 2 cut(s) 376, 570
BmrFI CCNGG 3 cut(s) 118, 381, 607
BpmI CTGGAG 2 cut(s) 482, 627
BsaHI GRCGYC 1 cut(s) 435
BsaJI CCNNGG 3 cut(s) 117, 379, 572
Bsc4I CCNNNNNNNGG 1 cut(s) 657
Bse3DI GCAATG 1 cut(s) 633
BseBI CCWGG 3 cut(s) 118, 381, 607
BseDI CCNNGG 3 cut(s) 117, 379, 572
BseGI GGATG 1 cut(s) 262
BseLI CCNNNNNNNGG 1 cut(s) 657
BseMI GCAATG 1 cut(s) 633
BseXI GCAGC 1 cut(s) 187
BsgI GTGCAG 1 cut(s) 186
BshFI GGCC 4 cut(s) 116, 318, 650, 661
BsiHKCI CYCGRG 1 cut(s) 395
BslFI GGGAC 3 cut(s) 185, 361, 768
BslI CCNNNNNNNGG 1 cut(s) 657
BsmAI GTCTC 4 cut(s) 543, 643, 720, 756
BsmFI GGGAC 3 cut(s) 185, 361, 768
BsnI GGCC 4 cut(s) 116, 318, 650, 661
BsoBI CYCGRG 1 cut(s) 395
Bsp143I GATC 5 cut(s) 4, 246, 530, 568, 768
BspANI GGCC 4 cut(s) 116, 318, 650, 661
BspLI GGNNCC 2 cut(s) 376, 570
BspMAI CTGCAG 1 cut(s) 340
BspMI ACCTGC 1 cut(s) 490
BspPI GGATC 5 cut(s) 12, 241, 538, 563, 576
BsrDI GCAATG 1 cut(s) 633
BssECI CCNNGG 3 cut(s) 117, 379, 572
BssMI GATC 5 cut(s) 4, 246, 530, 568, 768
BssNI GRCGYC 1 cut(s) 435
BssSI CACGAG 1 cut(s) 498
Bst2BI CACGAG 1 cut(s) 498
Bst2UI CCWGG 3 cut(s) 118, 381, 607
Bst4CI ACNGT 2 cut(s) 176, 714
Bst6I CTCTTC 1 cut(s) 422
BstACI GRCGYC 1 cut(s) 435
BstC8I GCNNGC 1 cut(s) 340
BstDEI CTNAG 1 cut(s) 787
BstF5I GGATG 1 cut(s) 262
BstKTI GATC 5 cut(s) 7, 249, 533, 571, 771
BstMAI GTCTC 4 cut(s) 543, 643, 720, 756
BstMBI GATC 5 cut(s) 4, 246, 530, 568, 768
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstNI CCWGG 3 cut(s) 118, 381, 607
BstNSI RCATGY 1 cut(s) 636
BstSCI CCNGG 3 cut(s) 116, 379, 605
BstSFI CTRYAG 2 cut(s) 336, 439
BstV1I GCAGC 1 cut(s) 187
BstX2I RGATCY 1 cut(s) 568
BstYI RGATCY 1 cut(s) 568
BsuRI GGCC 4 cut(s) 116, 318, 650, 661
BtgZI GCGATG 1 cut(s) 357
BtsCI GGATG 1 cut(s) 262
BtsI GCAGTG 1 cut(s) 701
BtsIMutI CAGTG 1 cut(s) 701
BveI ACCTGC 1 cut(s) 490
Cac8I GCNNGC 1 cut(s) 340
CaiI CAGNNNCTG 2 cut(s) 200, 700
CseI GACGC 1 cut(s) 206
Csp6I GTAC 2 cut(s) 109, 455
CviAII CATG 3 cut(s) 112, 633, 667
CviQI GTAC 2 cut(s) 109, 455
DdeI CTNAG 1 cut(s) 787
DpnI GATC 5 cut(s) 6, 248, 532, 570, 770
DpnII GATC 5 cut(s) 4, 246, 530, 568, 768
EaeI YGGCCR 1 cut(s) 114
Eam1104I CTCTTC 1 cut(s) 422
EarI CTCTTC 1 cut(s) 422
Eco57I CTGAAG 1 cut(s) 710
Eco88I CYCGRG 1 cut(s) 395
EcoRI GAATTC 1 cut(s) 733
EcoRII CCWGG 3 cut(s) 116, 379, 605
FaeI CATG 3 cut(s) 115, 636, 670
FalI AAGNNNNNCTT 2 cut(s) 123, 155
FaqI GGGAC 3 cut(s) 185, 361, 768
FatI CATG 3 cut(s) 111, 632, 666
FblI GTMKAC 2 cut(s) 178, 478
Fnu4HI GCNGC 1 cut(s) 201
FokI GGATG 1 cut(s) 269
Fsp4HI GCNGC 1 cut(s) 201
FspBI CTAG 3 cut(s) 57, 324, 389
GluI GCNGC 1 cut(s) 201
GsuI CTGGAG 2 cut(s) 482, 627
HaeIII GGCC 4 cut(s) 116, 318, 650, 661
HgaI GACGC 1 cut(s) 206
Hin1I GRCGYC 1 cut(s) 435
Hin1II CATG 3 cut(s) 115, 636, 670
HinfI GANTC 3 cut(s) 96, 349, 507
Hpy166II GTNNAC 3 cut(s) 179, 236, 479
Hpy188I TCNGA 3 cut(s) 145, 310, 573
Hpy188III TCNNGA 4 cut(s) 163, 324, 644, 701
Hpy8I GTNNAC 3 cut(s) 179, 236, 479
HpyCH4III ACNGT 2 cut(s) 176, 714
HpyCH4IV ACGT 2 cut(s) 435, 781
HpyCH4V TGCA 2 cut(s) 203, 338
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
HpyF3I CTNAG 1 cut(s) 787
HpySE526I ACGT 2 cut(s) 435, 781
Hsp92I GRCGYC 1 cut(s) 435
Hsp92II CATG 3 cut(s) 115, 636, 670
Kzo9I GATC 5 cut(s) 4, 246, 530, 568, 768
Lsp1109I GCAGC 1 cut(s) 187
MaeI CTAG 3 cut(s) 57, 324, 389
MaeII ACGT 2 cut(s) 435, 781
MaeIII GTNAC 2 cut(s) 358, 431
MalI GATC 5 cut(s) 6, 248, 532, 570, 770
MboI GATC 5 cut(s) 4, 246, 530, 568, 768
MboII GAAGA 2 cut(s) 17, 439
MflI RGATCY 1 cut(s) 568
MlsI TGGCCA 1 cut(s) 116
MluCI AATT 3 cut(s) 289, 328, 733
MluNI TGGCCA 1 cut(s) 116
MlyI GAGTC 2 cut(s) 90, 343
MmeI TCCRAC 2 cut(s) 508, 661
MnlI CCTC 8 cut(s) 27, 249, 329, 486, 567, 640, 723, 796
Mox20I TGGCCA 1 cut(s) 116
MscI TGGCCA 1 cut(s) 116
MseI TTAA 2 cut(s) 21, 578
MslI CAYNNNNRTG 2 cut(s) 255, 563
Msp20I TGGCCA 1 cut(s) 116
MspR9I CCNGG 3 cut(s) 118, 381, 607
MvaI CCWGG 3 cut(s) 118, 381, 607
MwoI GCNNNNNNNGC 1 cut(s) 197
NdeII GATC 5 cut(s) 4, 246, 530, 568, 768
NlaIII CATG 3 cut(s) 115, 636, 670
NlaIV GGNNCC 2 cut(s) 376, 570
NmuCI GTSAC 1 cut(s) 431
NspI RCATGY 1 cut(s) 636
OliI CACNNNNGTG 1 cut(s) 563
PfeI GAWTC 1 cut(s) 507
PkrI GCNGC 1 cut(s) 202
PleI GAGTC 2 cut(s) 90, 343
PpsI GAGTC 2 cut(s) 90, 343
Psp6I CCWGG 3 cut(s) 116, 379, 605
PspGI CCWGG 3 cut(s) 116, 379, 605
PspN4I GGNNCC 2 cut(s) 376, 570
PstI CTGCAG 1 cut(s) 340
PstNI CAGNNNCTG 2 cut(s) 200, 700
PsuI RGATCY 1 cut(s) 568
RsaI GTAC 2 cut(s) 110, 456
RsaNI GTAC 2 cut(s) 109, 455
RseI CAYNNNNRTG 2 cut(s) 255, 563
SaqAI TTAA 2 cut(s) 21, 578
SatI GCNGC 1 cut(s) 201
Sau3AI GATC 5 cut(s) 4, 246, 530, 568, 768
SbfI CCTGCAGG 1 cut(s) 340
SchI GAGTC 2 cut(s) 90, 343
ScrFI CCNGG 3 cut(s) 118, 381, 607
SdaI CCTGCAGG 1 cut(s) 340
SfcI CTRYAG 2 cut(s) 336, 439
SmiMI CAYNNNNRTG 2 cut(s) 255, 563
Sse8387I CCTGCAGG 1 cut(s) 340
Sse9I AATT 3 cut(s) 289, 328, 733
SspI AATATT 1 cut(s) 588
SspMI CTAG 3 cut(s) 57, 324, 389
StyD4I CCNGG 3 cut(s) 116, 379, 605
TaaI ACNGT 2 cut(s) 176, 714
TaiI ACGT 2 cut(s) 438, 784
TaqI TCGA 2 cut(s) 491, 767
TasI AATT 3 cut(s) 289, 328, 733
TatI WGTACW 2 cut(s) 108, 454
TfiI GAWTC 1 cut(s) 507
Tru1I TTAA 2 cut(s) 21, 578
Tru9I TTAA 2 cut(s) 21, 578
TscAI CASTG 1 cut(s) 701
TseFI GTSAC 1 cut(s) 431
TseI GCWGC 1 cut(s) 200
Tsp45I GTSAC 1 cut(s) 431
TspDTI ATGAA 3 cut(s) 29, 96, 534
TspRI CASTG 1 cut(s) 701
XapI RAATTY 3 cut(s) 289, 328, 733
XbaI TCTAGA 1 cut(s) 323
XceI RCATGY 1 cut(s) 636
XmiI GTMKAC 2 cut(s) 178, 478
XspI CTAG 3 cut(s) 57, 324, 389
ZraI GACGTC 1 cut(s) 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.