Rroxscaffold_2G00103540

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000083
Physical Location & Seq
Reverse (-)
26374487 .. 26375928
1442 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00103540.1

Sequence Viewer

Length: 903 bp
ATGGTTCTGGACTTATGGGACTTTACATATGCAAAAGTCACAGTTCAGTTTGGGACATTGGTGTCATCAAAGCGAAAGTTTGCGCACTCTGAAATAATCAAGATCACCAATAACTTTGAGAGGATTCTTGGCAAAGGTGGATTTGGAACAGTGTATCATGGACACCTAGACGACACTCAAGTAGCTGTCAAAATGCTTTCGCCATCATCAGTTCGAGGGTTTCAACAATTTCACGCTGAGGCATGTAGCAGTTCACATATCATAAGCTGGGAAGGTAGACTTAGAATAGCATCAGATGCCGCACAAGGATTGCAGTACTTGCACTATGGTATTAAGCCGCCAATAATCCATAGGGATGTGAAATCAACAAACATTTTGTTGAATGAAAATTTCCAAGCCAAGGTATCAGACTTTGGCCTATCCAAAAACTTTCCTACAGAGGTTGGGACTCATATATCGACAACTGTTGCAGGAACTCCTGGATACCTTGACCCTGAGTATTACCTATCAAACAGGTTAACTGAGAAAAGCGATGTTTATAGCTTCGGGATTGTGCTGTTGGAGATTATCACAGGTCGACCTGCTTTATCCGATGAGAGAATTCACATTAGCCAATGGGTTGGTTTCATGCTTGAAACAGGAAACATTTACAGTATTGTCGATCCCAGGTTGAAGGGAAATGTCACTGTCAACTCTGTGTGGAAAGCTGTGGAGATAGCAATGGCATGTGTGTCCTCAAGTGCCATAAAAAGGCCAATTATGAGTCAAGTAGTTATAGAACTACAGGAGTGTTTGGCGACACAAATGGGTGAAACAAAGCATAACAATGGAACAGAATTAACATGTTCCACTGACCTGATGTCTAACAATTCCATTGTTATGCTAAGTCCCTCTGTGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

300

Amino Acids

33.23

Weight (kDa)

6.79

Isoelectric Point (pI)

41.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 88 - 258 1.3e-22 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 93 - 208 1.5e-24 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000083)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07560 AT1G51790 AT1G51790 AT1G51790 AT1G51800 AT1G51805 AT1G51805 AT1G51810 AT1G51820 AT1G51820 AT1G51830 AT1G51830 AT1G51840 AT1G51840 AT1G51840 AT1G51840 AT1G51840 AT1G51850 AT1G51850 AT1G51860 AT1G51860 AT1G51870 AT1G51870 AT1G51880 AT1G51880 AT1G51880 AT1G51890 AT1G51890 AT1G51890 AT1G51890 AT1G51890 AT1G51910 AT2G04300 AT2G04300 AT2G28960 AT2G28960 AT2G28970 AT2G28970 AT2G28990 AT2G28990 AT2G29000 AT3G21340 AT3G46350 AT5G59616 AT5G59650 AT5G59650 AT5G59660 AT5G59660 AT5G59660 AT5G59670 AT5G59670 AT5G59680
fragaria_vesca FvH4_2g03270 FvH4_3g21300 FvH4_6g32660 FvH4_6g32660 FvH4_6g32670 FvH4_6g32670 FvH4_6g32690 FvH4_6g32690 FvH4_6g32691 FvH4_6g32700 FvH4_6g32740 FvH4_6g32750 FvH4_6g33210 FvH4_6g33210 FvH4_7g24270 FvH4_7g24280 FvH4_7g24291 FvH4_7g24300
malus_domestica MD09G1198400.v1.1 MD09G1198600.v1.1 MD09G1199100.v1.1 MD09G1199200.v1.1 MD09G1199300.v1.1 MD09G1199500.v1.1 MD09G1199600.v1.1 MD17G1179300.v1.1 MD17G1180200.v1.1 MD17G1266000.v1.1
prunus_persica Prupe.1G438900_v2.0.a1 Prupe.1G439000_v2.0.a1 Prupe.1G439100_v2.0.a1 Prupe.3G019400_v2.0.a1 Prupe.3G021900_v2.0.a1 Prupe.3G054500_v2.0.a1 Prupe.3G054500_v2.0.a1 Prupe.3G055100_v2.0.a1 Prupe.3G055400_v2.0.a1 Prupe.3G055500_v2.0.a1 Prupe.3G055600_v2.0.a1 Prupe.3G055700_v2.0.a1 Prupe.3G055800_v2.0.a1 Prupe.3G055900_v2.0.a1 Prupe.3G055900_v2.0.a1 Prupe.3G056000_v2.0.a1 Prupe.3G056000_v2.0.a1 Prupe.3G056100_v2.0.a1 Prupe.3G209600_v2.0.a1 Prupe.3G209700_v2.0.a1 Prupe.6G291100_v2.0.a1 Prupe.7G208900_v2.0.a1 Prupe.8G038300_v2.0.a1
pyrus_communis pycom09g11570 pycom09g11580 pycom09g11610 pycom09g11630 pycom09g11640 pycom17g18840 pycom17g18910 pycom17g18930 pycom17g18940
rosa_chinensis RchiOBHm_Chr1g0317521 RchiOBHm_Chr1g0317541 RchiOBHm_Chr2g0123351 RchiOBHm_Chr2g0141181 RchiOBHm_Chr2g0141191 RchiOBHm_Chr2g0141211 RchiOBHm_Chr2g0141221 RchiOBHm_Chr2g0141261 RchiOBHm_Chr2g0141271 RchiOBHm_Chr2g0141311 RchiOBHm_Chr2g0141331 RchiOBHm_Chr2g0141371 RchiOBHm_Chr2g0141391 RchiOBHm_Chr2g0141401 RchiOBHm_Chr2g0141431 RchiOBHm_Chr2g0141481 RchiOBHm_Chr2g0141491 RchiOBHm_Chr2g0141591 RchiOBHm_Chr2g0141601 RchiOBHm_Chr2g0141611 RchiOBHm_Chr2g0141631 RchiOBHm_Chr2g0141641 RchiOBHm_Chr2g0141661 RchiOBHm_Chr2g0141681 RchiOBHm_Chr2g0141701 RchiOBHm_Chr2g0141781 RchiOBHm_Chr2g0141811 RchiOBHm_Chr2g0141821 RchiOBHm_Chr3g0479311 RchiOBHm_Chr3g0495751 RchiOBHm_Chr4g0404741 RchiOBHm_Chr4g0410341 RchiOBHm_Chr4g0418371 RchiOBHm_Chr4g0438651 RchiOBHm_Chr5g0036411 RchiOBHm_Chr5g0036491 RchiOBHm_Chr5g0042391 RchiOBHm_Chr6g0279871 RchiOBHm_Chr7g0192921 RchiOBHm_Chr7g0214901 RchiOBHm_Chr7g0234931
rosa_laevigata RLG00000003432 RLG00000008806 RLG00000013062 RLG00000019514 RLG00000019923 RLG00000019924 RLG00000019925 RLG00000019930 RLG00000019931 RLG00000019934 RLG00000019937 RLG00000019938 RLG00000033697
rosa_multiflora Rmu_co8002302.1_g000001 Rmu_sc0000147.1_g000031 Rmu_sc0000463.1_g000005 Rmu_sc0000712.1_g000003 Rmu_sc0001483.1_g000017 Rmu_sc0001554.1_g000002 Rmu_sc0001554.1_g000005 Rmu_sc0001554.1_g000008 Rmu_sc0001981.1_g000017 Rmu_sc0002040.1_g000056 Rmu_sc0002755.1_g000018 Rmu_sc0002804.1_g000016 Rmu_sc0002928.1_g000015 Rmu_sc0003040.1_g000008 Rmu_sc0003040.1_g000018 Rmu_sc0004512.1_g000001 Rmu_sc0004512.1_g000004 Rmu_sc0005507.1_g000001 Rmu_sc0005507.1_g000009 Rmu_sc0005507.1_g000033 Rmu_sc0005507.1_g000037 Rmu_sc0005507.1_g000043 Rmu_sc0005507.1_g000047 Rmu_sc0006318.1_g000004 Rmu_sc0006318.1_g000014 Rmu_sc0006318.1_g000021 Rmu_sc0006556.1_g000001 Rmu_sc0007208.1_g000002 Rmu_sc0007208.1_g000003 Rmu_sc0007208.1_g000006 Rmu_sc0007208.1_g000008
rosa_roxburghii Rroxscaffold_1G00044430 Rroxscaffold_2G00103420 Rroxscaffold_2G00103470 Rroxscaffold_2G00103490 Rroxscaffold_2G00103500 Rroxscaffold_2G00103520 Rroxscaffold_2G00103530 Rroxscaffold_2G00103540 Rroxscaffold_2G00103550 Rroxscaffold_2G00103570 Rroxscaffold_2G00103770 Rroxscaffold_2G00103780 Rroxscaffold_2G00103800 Rroxscaffold_2G00103820 Rroxscaffold_2G00103860 Rroxscaffold_2G00103890 Rroxscaffold_2G00103930 Rroxscaffold_2G00103940 Rroxscaffold_2G00104010 Rroxscaffold_2G00104030 Rroxscaffold_2G00104050 Rroxscaffold_2G00104060 Rroxscaffold_2G00104070 Rroxscaffold_2G00104090 Rroxscaffold_2G00104100 Rroxscaffold_2G00104120 Rroxscaffold_2G00104130 Rroxscaffold_4G00331710
rosa_rugosa Rorug02G0367500 Rorug02G0367500 Rorug02G0367600 Rorug02G0367800 Rorug02G0367800 Rorug02G0367900 Rorug02G0368100 Rorug02G0368100 Rorug02G0368100 Rorug02G0368200 Rorug02G0368700 Rorug02G0368900 Rorug05G0155600 Rorug05G0155700 Rorug05G0155800 Rorug05G0156700 Rorug05G0157300
rosa_samantha Rh1AG028000 Rh2AG418700 Rh2AG418900 Rh2AG419000 Rh2AG419100 Rh2AG419400 Rh2AG419600 Rh2AG419800 Rh2AG420400 Rh2AG421000 Rh2BG428500 Rh2BG428600 Rh2BG428800 Rh2BG428900 Rh2BG429300 Rh2BG429400 Rh2BG429700 Rh2BG429900 Rh2BG430000 Rh2BG430700 Rh2CG405100 Rh2CG405200 Rh2CG405300 Rh2CG405500 Rh2CG405600 Rh2CG405700 Rh2CG406000 Rh2CG406100 Rh2CG406300 Rh2CG406600 Rh2CG406700 Rh2CG407500 Rh2CG408100 Rh2DG438500 Rh3DG123900 Rh3DG124000 Rh5BG249700 Rh5BG482500 Rh5CG281500 Rh5CG507300 Rh7DG133300
rosa_wichuraiana Rw0G019720 Rw0G019730 Rw0G019750 Rw0G023010 Rw2G034340 Rw2G034350 Rw2G034370 Rw2G034380 Rw2G034400 Rw2G034430 Rw2G034470 Rw2G034480 Rw2G034510 Rw5G022890 Rw5G026410 Rw5G032710 Rw5G042850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 61
Acc16I TGCGCA 1 cut(s) 84
Acc36I ACCTGC 1 cut(s) 589
AccI GTMKAC 2 cut(s) 277, 577
AciI CCGC 2 cut(s) 300, 338
AclWI GGATC 1 cut(s) 656
AcsI RAATTY 2 cut(s) 388, 600
AfaI GTAC 1 cut(s) 317
AfiI CCNNNNNNNGG 3 cut(s) 400, 750, 897
AflIII ACRYGT 1 cut(s) 842
AgsI TTSAA 4 cut(s) 224, 382, 635, 673
AhdI GACNNNNNGTC 1 cut(s) 859
AjnI CCWGG 2 cut(s) 478, 665
AluBI AGCT 4 cut(s) 185, 267, 543, 707
AluI AGCT 4 cut(s) 185, 267, 543, 707
AlwI GGATC 1 cut(s) 656
AoxI GGCC 2 cut(s) 415, 752
ApoI RAATTY 2 cut(s) 388, 600
AspLEI GCGC 1 cut(s) 85
AsuHPI GGTGA 2 cut(s) 97, 821
BbvCI CCTCAGC 1 cut(s) 237
BccI CCATC 1 cut(s) 211
BciT130I CCWGG 2 cut(s) 480, 667
BciVI GTATCC 1 cut(s) 476
BfaI CTAG 1 cut(s) 167
BfmI CTRYAG 2 cut(s) 435, 782
BfuAI ACCTGC 1 cut(s) 589
BfuI GTATCC 1 cut(s) 476
BisI GCNGC 2 cut(s) 300, 338
BlsI GCNGC 2 cut(s) 301, 339
BmcAI AGTACT 1 cut(s) 317
Bme1390I CCNGG 2 cut(s) 480, 667
BmeRI GACNNNNNGTC 1 cut(s) 859
BmrFI CCNGG 2 cut(s) 480, 667
BmsI GCATC 2 cut(s) 286, 299
Bpu10I CCTNAGC 1 cut(s) 237
BpuEI CTTGAG 2 cut(s) 162, 721
BsaJI CCNNGG 2 cut(s) 399, 665
Bsc4I CCNNNNNNNGG 3 cut(s) 400, 750, 897
Bse3DI GCAATG 1 cut(s) 726
BseBI CCWGG 2 cut(s) 480, 667
BseDI CCNNGG 2 cut(s) 399, 665
BseGI GGATG 1 cut(s) 361
BseLI CCNNNNNNNGG 3 cut(s) 400, 750, 897
BseMI GCAATG 1 cut(s) 726
BseMII CTCAG 3 cut(s) 228, 486, 513
BseYI CCCAGC 1 cut(s) 267
BshFI GGCC 2 cut(s) 417, 754
BslFI GGGAC 4 cut(s) 32, 67, 460, 873
BslI CCNNNNNNNGG 3 cut(s) 400, 750, 897
BsmFI GGGAC 4 cut(s) 32, 67, 460, 873
BsnI GGCC 2 cut(s) 417, 754
Bsp143I GATC 2 cut(s) 102, 661
BspACI CCGC 2 cut(s) 300, 338
BspANI GGCC 2 cut(s) 417, 754
BspCNI CTCAG 3 cut(s) 229, 487, 514
BspMI ACCTGC 1 cut(s) 589
BspPI GGATC 1 cut(s) 656
BsrDI GCAATG 1 cut(s) 726
BssECI CCNNGG 2 cut(s) 399, 665
BssMI GATC 2 cut(s) 102, 661
BssT1I CCWWGG 1 cut(s) 399
Bst2UI CCWGG 2 cut(s) 480, 667
Bst4CI ACNGT 5 cut(s) 43, 151, 466, 653, 688
BstAPI GCANNNNNTGC 2 cut(s) 296, 319
BstDEI CTNAG 5 cut(s) 237, 281, 495, 522, 884
BstENI CCTNNNNNAGG 1 cut(s) 895
BstF5I GGATG 1 cut(s) 361
BstHHI GCGC 1 cut(s) 85
BstKTI GATC 2 cut(s) 105, 664
BstMBI GATC 2 cut(s) 102, 661
BstMWI GCNNNNNNNGC 2 cut(s) 296, 319
BstNI CCWGG 2 cut(s) 480, 667
BstNSI RCATGY 3 cut(s) 246, 729, 846
BstSCI CCNGG 2 cut(s) 478, 665
BstSFI CTRYAG 2 cut(s) 435, 782
BstXI CCANNNNNNTGG 1 cut(s) 620
BsuI GTATCC 1 cut(s) 476
BsuRI GGCC 2 cut(s) 417, 754
BtgZI GCGATG 1 cut(s) 546
BtsCI GGATG 1 cut(s) 361
BtsIMutI CAGTG 3 cut(s) 156, 684, 849
BveI ACCTGC 1 cut(s) 589
CfoI GCGC 1 cut(s) 85
Csp6I GTAC 1 cut(s) 316
CviAII CATG 5 cut(s) 158, 243, 628, 726, 843
CviJI RGCY 9 cut(s) 185, 267, 337, 398, 417, 543, 612, 707, 754
CviKI_1 RGCY 9 cut(s) 185, 267, 337, 398, 417, 543, 612, 707, 754
CviQI GTAC 1 cut(s) 316
DdeI CTNAG 5 cut(s) 237, 281, 495, 522, 884
DpnI GATC 2 cut(s) 104, 663
DpnII GATC 2 cut(s) 102, 661
DrdI GACNNNNNNGTC 1 cut(s) 61
DriI GACNNNNNGTC 1 cut(s) 859
DseDI GACNNNNNNGTC 1 cut(s) 61
Eam1105I GACNNNNNGTC 1 cut(s) 859
Eco130I CCWWGG 1 cut(s) 399
EcoNI CCTNNNNNAGG 1 cut(s) 895
EcoRI GAATTC 1 cut(s) 600
EcoRII CCWGG 2 cut(s) 478, 665
EcoT14I CCWWGG 1 cut(s) 399
ErhI CCWWGG 1 cut(s) 399
FaeI CATG 5 cut(s) 161, 246, 631, 729, 846
FalI AAGNNNNNCTT 2 cut(s) 264, 296
FaqI GGGAC 4 cut(s) 32, 67, 460, 873
FatI CATG 5 cut(s) 157, 242, 627, 725, 842
FauNDI CATATG 1 cut(s) 28
FblI GTMKAC 2 cut(s) 277, 577
Fnu4HI GCNGC 2 cut(s) 300, 338
FokI GGATG 1 cut(s) 368
Fsp4HI GCNGC 2 cut(s) 300, 338
FspBI CTAG 1 cut(s) 167
FspI TGCGCA 1 cut(s) 84
GlaI GCGC 1 cut(s) 84
GluI GCNGC 2 cut(s) 300, 338
GsaI CCCAGC 1 cut(s) 271
HaeIII GGCC 2 cut(s) 417, 754
HhaI GCGC 1 cut(s) 85
Hin1II CATG 5 cut(s) 161, 246, 631, 729, 846
Hin6I GCGC 1 cut(s) 83
HinP1I GCGC 1 cut(s) 83
HincII GTYRAC 3 cut(s) 519, 578, 691
HindII GTYRAC 3 cut(s) 519, 578, 691
HinfI GANTC 3 cut(s) 124, 448, 763
HpaI GTTAAC 1 cut(s) 519
HphI GGTGA 2 cut(s) 97, 821
Hpy166II GTNNAC 5 cut(s) 254, 278, 519, 578, 691
Hpy188I TCNGA 4 cut(s) 91, 295, 409, 592
Hpy188III TCNNGA 3 cut(s) 8, 100, 547
Hpy8I GTNNAC 5 cut(s) 254, 278, 519, 578, 691
HpyAV CCTTC 2 cut(s) 266, 667
HpyCH4III ACNGT 5 cut(s) 43, 151, 466, 653, 688
HpyCH4V TGCA 4 cut(s) 32, 313, 322, 470
HpyF10VI GCNNNNNNNGC 2 cut(s) 296, 319
HpyF3I CTNAG 5 cut(s) 237, 281, 495, 522, 884
Hsp92II CATG 5 cut(s) 161, 246, 631, 729, 846
HspAI GCGC 1 cut(s) 83
KspAI GTTAAC 1 cut(s) 519
Kzo9I GATC 2 cut(s) 102, 661
LweI GCATC 2 cut(s) 286, 299
MaeI CTAG 1 cut(s) 167
MaeIII GTNAC 2 cut(s) 37, 682
MalI GATC 2 cut(s) 104, 663
MboI GATC 2 cut(s) 102, 661
MluCI AATT 6 cut(s) 227, 388, 600, 756, 836, 868
MlyI GAGTC 2 cut(s) 442, 772
MmeI TCCRAC 1 cut(s) 540
MnlI CCTC 7 cut(s) 114, 209, 232, 433, 745, 891, 901
MseI TTAA 3 cut(s) 333, 518, 839
MslI CAYNNNNRTG 3 cut(s) 354, 825, 878
MspR9I CCNGG 2 cut(s) 480, 667
MvaI CCWGG 2 cut(s) 480, 667
MwoI GCNNNNNNNGC 2 cut(s) 296, 319
NdeI CATATG 1 cut(s) 28
NdeII GATC 2 cut(s) 102, 661
NlaIII CATG 5 cut(s) 161, 246, 631, 729, 846
NmuCI GTSAC 2 cut(s) 37, 682
NsbI TGCGCA 1 cut(s) 84
NspI RCATGY 3 cut(s) 246, 729, 846
PciI ACATGT 1 cut(s) 842
PfeI GAWTC 1 cut(s) 124
PfoI TCCNGGA 1 cut(s) 478
PkrI GCNGC 2 cut(s) 301, 339
PleI GAGTC 2 cut(s) 442, 771
PpsI GAGTC 2 cut(s) 442, 771
PscI ACATGT 1 cut(s) 842
Psp6I CCWGG 2 cut(s) 478, 665
PspFI CCCAGC 1 cut(s) 267
PspGI CCWGG 2 cut(s) 478, 665
RsaI GTAC 1 cut(s) 317
RsaNI GTAC 1 cut(s) 316
RseI CAYNNNNRTG 3 cut(s) 354, 825, 878
SalI GTCGAC 1 cut(s) 576
SaqAI TTAA 3 cut(s) 333, 518, 839
SatI GCNGC 2 cut(s) 300, 338
Sau3AI GATC 2 cut(s) 102, 661
ScaI AGTACT 1 cut(s) 317
SchI GAGTC 2 cut(s) 442, 772
ScrFI CCNGG 2 cut(s) 480, 667
SfaNI GCATC 2 cut(s) 286, 299
SfcI CTRYAG 2 cut(s) 435, 782
SmiMI CAYNNNNRTG 3 cut(s) 354, 825, 878
SmlI CTYRAG 2 cut(s) 177, 736
SmoI CTYRAG 2 cut(s) 177, 736
Sse9I AATT 6 cut(s) 227, 388, 600, 756, 836, 868
SsiI CCGC 2 cut(s) 300, 338
SspMI CTAG 1 cut(s) 167
StyD4I CCNGG 2 cut(s) 478, 665
StyI CCWWGG 1 cut(s) 399
TaaI ACNGT 5 cut(s) 43, 151, 466, 653, 688
TaqI TCGA 4 cut(s) 214, 458, 577, 660
TasI AATT 6 cut(s) 227, 388, 600, 756, 836, 868
TatI WGTACW 1 cut(s) 315
TauI GCSGC 2 cut(s) 302, 340
TfiI GAWTC 1 cut(s) 124
Tru1I TTAA 3 cut(s) 333, 518, 839
Tru9I TTAA 3 cut(s) 333, 518, 839
TscAI CASTG 3 cut(s) 156, 691, 856
TseFI GTSAC 2 cut(s) 37, 682
Tsp45I GTSAC 2 cut(s) 37, 682
TspDTI ATGAA 2 cut(s) 399, 616
TspRI CASTG 3 cut(s) 156, 691, 856
XagI CCTNNNNNAGG 1 cut(s) 895
XapI RAATTY 2 cut(s) 388, 600
XceI RCATGY 3 cut(s) 246, 729, 846
XmiI GTMKAC 2 cut(s) 277, 577
XspI CTAG 1 cut(s) 167
ZrmI AGTACT 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.