Rroxscaffold_2G00103520

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
26320379 .. 26321823
1445 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00103520.1

Sequence Viewer

Length: 759 bp
ATGGTTCTGGACTTATGGGACTTTACATATGCAAAAGTCACAGTTCAGTTTGGGACATTGGTGTCATCAAAGCGAAAGTTTGCGCACTCTGAAATAATCAAGATCACCAATAACTTTGAGAGGATTCTTGGCAAAGGTGGATTTGGAACAGTGTATCATGGACACCTAGACGACACTCAAGTAGCTGTCAAAATGCTTTCGCCATCATCAGTTCGAGGGTTTCAACAATTTCACGCTGAGGCATGTAGCAGTTCACATATCATAAGCTGGGAAGGTAGACTTAGAATAGCATCAGATGCCGCACAAGGATTGCAGTACTTGCACTATGGAACTCCTGGATACCTTGACCCTGAGTATTACCTATCAAACAGGTTAACTGAGAAAAGCGATGTTTATAGCTTCGGGATTGTGCTGTTGGAGATTATCACAGGTCGACCTGCTTTATCCGATGAGAGAATTCACATTAGCCAATGGGTTGGTTTCATGCTTGAAACAGGAAACATTTACAGTATTGTCGATCCCAGGTTGAAGGGAAATGTCACTGTCAACTCTGTGTGGAAAGCTGTGGAGATAGCAATGGCATGTGTGTCCTCAAGTGCCATAAAAAGGCCAATTATGAGTCAAGTAGTTATAGAACTACAGGAGTGTTTGGCGACACAAATGGGTGAAACAAAGCATAACAATGGAACAGAATTAACATGTTCCACTGACCTGATGTCTAACAATTCCATTGTTATGCTAAGTCCCTCTGTGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

252

Amino Acids

28.02

Weight (kDa)

6.44

Isoelectric Point (pI)

44.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 109 - 160 1.3e-06 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 114 - 211 4.3e-06 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000083)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07560 AT1G51790 AT1G51790 AT1G51790 AT1G51800 AT1G51805 AT1G51805 AT1G51810 AT1G51820 AT1G51820 AT1G51830 AT1G51830 AT1G51840 AT1G51840 AT1G51840 AT1G51840 AT1G51840 AT1G51850 AT1G51850 AT1G51860 AT1G51860 AT1G51870 AT1G51870 AT1G51880 AT1G51880 AT1G51880 AT1G51890 AT1G51890 AT1G51890 AT1G51890 AT1G51890 AT1G51910 AT2G04300 AT2G04300 AT2G28960 AT2G28960 AT2G28970 AT2G28970 AT2G28990 AT2G28990 AT2G29000 AT3G21340 AT3G46350 AT5G59616 AT5G59650 AT5G59650 AT5G59660 AT5G59660 AT5G59660 AT5G59670 AT5G59670 AT5G59680
fragaria_vesca FvH4_2g03270 FvH4_3g21300 FvH4_6g32660 FvH4_6g32660 FvH4_6g32670 FvH4_6g32670 FvH4_6g32690 FvH4_6g32690 FvH4_6g32691 FvH4_6g32700 FvH4_6g32740 FvH4_6g32750 FvH4_6g33210 FvH4_6g33210 FvH4_7g24270 FvH4_7g24280 FvH4_7g24291 FvH4_7g24300
malus_domestica MD09G1198400.v1.1 MD09G1198600.v1.1 MD09G1199100.v1.1 MD09G1199200.v1.1 MD09G1199300.v1.1 MD09G1199500.v1.1 MD09G1199600.v1.1 MD17G1179300.v1.1 MD17G1180200.v1.1 MD17G1266000.v1.1
prunus_persica Prupe.1G438900_v2.0.a1 Prupe.1G439000_v2.0.a1 Prupe.1G439100_v2.0.a1 Prupe.3G019400_v2.0.a1 Prupe.3G021900_v2.0.a1 Prupe.3G054500_v2.0.a1 Prupe.3G054500_v2.0.a1 Prupe.3G055100_v2.0.a1 Prupe.3G055400_v2.0.a1 Prupe.3G055500_v2.0.a1 Prupe.3G055600_v2.0.a1 Prupe.3G055700_v2.0.a1 Prupe.3G055800_v2.0.a1 Prupe.3G055900_v2.0.a1 Prupe.3G055900_v2.0.a1 Prupe.3G056000_v2.0.a1 Prupe.3G056000_v2.0.a1 Prupe.3G056100_v2.0.a1 Prupe.3G209600_v2.0.a1 Prupe.3G209700_v2.0.a1 Prupe.6G291100_v2.0.a1 Prupe.7G208900_v2.0.a1 Prupe.8G038300_v2.0.a1
pyrus_communis pycom09g11570 pycom09g11580 pycom09g11610 pycom09g11630 pycom09g11640 pycom17g18840 pycom17g18910 pycom17g18930 pycom17g18940
rosa_chinensis RchiOBHm_Chr1g0317521 RchiOBHm_Chr1g0317541 RchiOBHm_Chr2g0123351 RchiOBHm_Chr2g0141181 RchiOBHm_Chr2g0141191 RchiOBHm_Chr2g0141211 RchiOBHm_Chr2g0141221 RchiOBHm_Chr2g0141261 RchiOBHm_Chr2g0141271 RchiOBHm_Chr2g0141311 RchiOBHm_Chr2g0141331 RchiOBHm_Chr2g0141371 RchiOBHm_Chr2g0141391 RchiOBHm_Chr2g0141401 RchiOBHm_Chr2g0141431 RchiOBHm_Chr2g0141481 RchiOBHm_Chr2g0141491 RchiOBHm_Chr2g0141591 RchiOBHm_Chr2g0141601 RchiOBHm_Chr2g0141611 RchiOBHm_Chr2g0141631 RchiOBHm_Chr2g0141641 RchiOBHm_Chr2g0141661 RchiOBHm_Chr2g0141681 RchiOBHm_Chr2g0141701 RchiOBHm_Chr2g0141781 RchiOBHm_Chr2g0141811 RchiOBHm_Chr2g0141821 RchiOBHm_Chr3g0479311 RchiOBHm_Chr3g0495751 RchiOBHm_Chr4g0404741 RchiOBHm_Chr4g0410341 RchiOBHm_Chr4g0418371 RchiOBHm_Chr4g0438651 RchiOBHm_Chr5g0036411 RchiOBHm_Chr5g0036491 RchiOBHm_Chr5g0042391 RchiOBHm_Chr6g0279871 RchiOBHm_Chr7g0192921 RchiOBHm_Chr7g0214901 RchiOBHm_Chr7g0234931
rosa_laevigata RLG00000003432 RLG00000008806 RLG00000013062 RLG00000019514 RLG00000019923 RLG00000019924 RLG00000019925 RLG00000019930 RLG00000019931 RLG00000019934 RLG00000019937 RLG00000019938 RLG00000033697
rosa_multiflora Rmu_co8002302.1_g000001 Rmu_sc0000147.1_g000031 Rmu_sc0000463.1_g000005 Rmu_sc0000712.1_g000003 Rmu_sc0001483.1_g000017 Rmu_sc0001554.1_g000002 Rmu_sc0001554.1_g000005 Rmu_sc0001554.1_g000008 Rmu_sc0001981.1_g000017 Rmu_sc0002040.1_g000056 Rmu_sc0002755.1_g000018 Rmu_sc0002804.1_g000016 Rmu_sc0002928.1_g000015 Rmu_sc0003040.1_g000008 Rmu_sc0003040.1_g000018 Rmu_sc0004512.1_g000001 Rmu_sc0004512.1_g000004 Rmu_sc0005507.1_g000001 Rmu_sc0005507.1_g000009 Rmu_sc0005507.1_g000033 Rmu_sc0005507.1_g000037 Rmu_sc0005507.1_g000043 Rmu_sc0005507.1_g000047 Rmu_sc0006318.1_g000004 Rmu_sc0006318.1_g000014 Rmu_sc0006318.1_g000021 Rmu_sc0006556.1_g000001 Rmu_sc0007208.1_g000002 Rmu_sc0007208.1_g000003 Rmu_sc0007208.1_g000006 Rmu_sc0007208.1_g000008
rosa_roxburghii Rroxscaffold_1G00044430 Rroxscaffold_2G00103420 Rroxscaffold_2G00103470 Rroxscaffold_2G00103490 Rroxscaffold_2G00103500 Rroxscaffold_2G00103520 Rroxscaffold_2G00103530 Rroxscaffold_2G00103540 Rroxscaffold_2G00103550 Rroxscaffold_2G00103570 Rroxscaffold_2G00103770 Rroxscaffold_2G00103780 Rroxscaffold_2G00103800 Rroxscaffold_2G00103820 Rroxscaffold_2G00103860 Rroxscaffold_2G00103890 Rroxscaffold_2G00103930 Rroxscaffold_2G00103940 Rroxscaffold_2G00104010 Rroxscaffold_2G00104030 Rroxscaffold_2G00104050 Rroxscaffold_2G00104060 Rroxscaffold_2G00104070 Rroxscaffold_2G00104090 Rroxscaffold_2G00104100 Rroxscaffold_2G00104120 Rroxscaffold_2G00104130 Rroxscaffold_4G00331710
rosa_rugosa Rorug02G0367500 Rorug02G0367500 Rorug02G0367600 Rorug02G0367800 Rorug02G0367800 Rorug02G0367900 Rorug02G0368100 Rorug02G0368100 Rorug02G0368100 Rorug02G0368200 Rorug02G0368700 Rorug02G0368900 Rorug05G0155600 Rorug05G0155700 Rorug05G0155800 Rorug05G0156700 Rorug05G0157300
rosa_samantha Rh1AG028000 Rh2AG418700 Rh2AG418900 Rh2AG419000 Rh2AG419100 Rh2AG419400 Rh2AG419600 Rh2AG419800 Rh2AG420400 Rh2AG421000 Rh2BG428500 Rh2BG428600 Rh2BG428800 Rh2BG428900 Rh2BG429300 Rh2BG429400 Rh2BG429700 Rh2BG429900 Rh2BG430000 Rh2BG430700 Rh2CG405100 Rh2CG405200 Rh2CG405300 Rh2CG405500 Rh2CG405600 Rh2CG405700 Rh2CG406000 Rh2CG406100 Rh2CG406300 Rh2CG406600 Rh2CG406700 Rh2CG407500 Rh2CG408100 Rh2DG438500 Rh3DG123900 Rh3DG124000 Rh5BG249700 Rh5BG482500 Rh5CG281500 Rh5CG507300 Rh7DG133300
rosa_wichuraiana Rw0G019720 Rw0G019730 Rw0G019750 Rw0G023010 Rw2G034340 Rw2G034350 Rw2G034370 Rw2G034380 Rw2G034400 Rw2G034430 Rw2G034470 Rw2G034480 Rw2G034510 Rw5G022890 Rw5G026410 Rw5G032710 Rw5G042850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 61
Acc16I TGCGCA 1 cut(s) 84
Acc36I ACCTGC 1 cut(s) 445
AccI GTMKAC 2 cut(s) 277, 433
AciI CCGC 1 cut(s) 300
AclWI GGATC 1 cut(s) 512
AcsI RAATTY 1 cut(s) 456
AfaI GTAC 1 cut(s) 317
AfiI CCNNNNNNNGG 2 cut(s) 606, 753
AflIII ACRYGT 1 cut(s) 698
AgsI TTSAA 3 cut(s) 224, 491, 529
AhdI GACNNNNNGTC 1 cut(s) 715
AjnI CCWGG 2 cut(s) 334, 521
AluBI AGCT 4 cut(s) 185, 267, 399, 563
AluI AGCT 4 cut(s) 185, 267, 399, 563
AlwI GGATC 1 cut(s) 512
AoxI GGCC 1 cut(s) 608
ApoI RAATTY 1 cut(s) 456
AspLEI GCGC 1 cut(s) 85
AsuHPI GGTGA 2 cut(s) 97, 677
BbvCI CCTCAGC 1 cut(s) 237
BccI CCATC 1 cut(s) 211
BciT130I CCWGG 2 cut(s) 336, 523
BciVI GTATCC 1 cut(s) 332
BfaI CTAG 1 cut(s) 167
BfmI CTRYAG 1 cut(s) 638
BfuAI ACCTGC 1 cut(s) 445
BfuI GTATCC 1 cut(s) 332
BisI GCNGC 1 cut(s) 300
BlsI GCNGC 1 cut(s) 301
BmcAI AGTACT 1 cut(s) 317
Bme1390I CCNGG 2 cut(s) 336, 523
BmeRI GACNNNNNGTC 1 cut(s) 715
BmrFI CCNGG 2 cut(s) 336, 523
BmsI GCATC 2 cut(s) 286, 299
Bpu10I CCTNAGC 1 cut(s) 237
BpuEI CTTGAG 2 cut(s) 162, 577
BsaJI CCNNGG 1 cut(s) 521
Bsc4I CCNNNNNNNGG 2 cut(s) 606, 753
Bse3DI GCAATG 1 cut(s) 582
BseBI CCWGG 2 cut(s) 336, 523
BseDI CCNNGG 1 cut(s) 521
BseLI CCNNNNNNNGG 2 cut(s) 606, 753
BseMI GCAATG 1 cut(s) 582
BseMII CTCAG 3 cut(s) 228, 342, 369
BseYI CCCAGC 1 cut(s) 267
BshFI GGCC 1 cut(s) 610
BslFI GGGAC 3 cut(s) 32, 67, 729
BslI CCNNNNNNNGG 2 cut(s) 606, 753
BsmFI GGGAC 3 cut(s) 32, 67, 729
BsnI GGCC 1 cut(s) 610
Bsp143I GATC 2 cut(s) 102, 517
BspACI CCGC 1 cut(s) 300
BspANI GGCC 1 cut(s) 610
BspCNI CTCAG 3 cut(s) 229, 343, 370
BspMI ACCTGC 1 cut(s) 445
BspPI GGATC 1 cut(s) 512
BsrDI GCAATG 1 cut(s) 582
BssECI CCNNGG 1 cut(s) 521
BssMI GATC 2 cut(s) 102, 517
Bst2UI CCWGG 2 cut(s) 336, 523
Bst4CI ACNGT 4 cut(s) 43, 151, 509, 544
BstAPI GCANNNNNTGC 2 cut(s) 296, 319
BstDEI CTNAG 5 cut(s) 237, 281, 351, 378, 740
BstENI CCTNNNNNAGG 1 cut(s) 751
BstHHI GCGC 1 cut(s) 85
BstKTI GATC 2 cut(s) 105, 520
BstMBI GATC 2 cut(s) 102, 517
BstMWI GCNNNNNNNGC 2 cut(s) 296, 319
BstNI CCWGG 2 cut(s) 336, 523
BstNSI RCATGY 3 cut(s) 246, 585, 702
BstSCI CCNGG 2 cut(s) 334, 521
BstSFI CTRYAG 1 cut(s) 638
BstXI CCANNNNNNTGG 1 cut(s) 476
BsuI GTATCC 1 cut(s) 332
BsuRI GGCC 1 cut(s) 610
BtgZI GCGATG 1 cut(s) 402
BtsIMutI CAGTG 3 cut(s) 156, 540, 705
BveI ACCTGC 1 cut(s) 445
CfoI GCGC 1 cut(s) 85
Csp6I GTAC 1 cut(s) 316
CviAII CATG 5 cut(s) 158, 243, 484, 582, 699
CviJI RGCY 6 cut(s) 185, 267, 399, 468, 563, 610
CviKI_1 RGCY 6 cut(s) 185, 267, 399, 468, 563, 610
CviQI GTAC 1 cut(s) 316
DdeI CTNAG 5 cut(s) 237, 281, 351, 378, 740
DpnI GATC 2 cut(s) 104, 519
DpnII GATC 2 cut(s) 102, 517
DrdI GACNNNNNNGTC 1 cut(s) 61
DriI GACNNNNNGTC 1 cut(s) 715
DseDI GACNNNNNNGTC 1 cut(s) 61
Eam1105I GACNNNNNGTC 1 cut(s) 715
EcoNI CCTNNNNNAGG 1 cut(s) 751
EcoRI GAATTC 1 cut(s) 456
EcoRII CCWGG 2 cut(s) 334, 521
FaeI CATG 5 cut(s) 161, 246, 487, 585, 702
FalI AAGNNNNNCTT 2 cut(s) 264, 296
FaqI GGGAC 3 cut(s) 32, 67, 729
FatI CATG 5 cut(s) 157, 242, 483, 581, 698
FauNDI CATATG 1 cut(s) 28
FblI GTMKAC 2 cut(s) 277, 433
Fnu4HI GCNGC 1 cut(s) 300
Fsp4HI GCNGC 1 cut(s) 300
FspBI CTAG 1 cut(s) 167
FspI TGCGCA 1 cut(s) 84
GlaI GCGC 1 cut(s) 84
GluI GCNGC 1 cut(s) 300
GsaI CCCAGC 1 cut(s) 271
HaeIII GGCC 1 cut(s) 610
HhaI GCGC 1 cut(s) 85
Hin1II CATG 5 cut(s) 161, 246, 487, 585, 702
Hin6I GCGC 1 cut(s) 83
HinP1I GCGC 1 cut(s) 83
HincII GTYRAC 3 cut(s) 375, 434, 547
HindII GTYRAC 3 cut(s) 375, 434, 547
HinfI GANTC 2 cut(s) 124, 619
HpaI GTTAAC 1 cut(s) 375
HphI GGTGA 2 cut(s) 97, 677
Hpy166II GTNNAC 5 cut(s) 254, 278, 375, 434, 547
Hpy188I TCNGA 3 cut(s) 91, 295, 448
Hpy188III TCNNGA 3 cut(s) 8, 100, 403
Hpy8I GTNNAC 5 cut(s) 254, 278, 375, 434, 547
HpyAV CCTTC 2 cut(s) 266, 523
HpyCH4III ACNGT 4 cut(s) 43, 151, 509, 544
HpyCH4V TGCA 3 cut(s) 32, 313, 322
HpyF10VI GCNNNNNNNGC 2 cut(s) 296, 319
HpyF3I CTNAG 5 cut(s) 237, 281, 351, 378, 740
Hsp92II CATG 5 cut(s) 161, 246, 487, 585, 702
HspAI GCGC 1 cut(s) 83
KspAI GTTAAC 1 cut(s) 375
Kzo9I GATC 2 cut(s) 102, 517
LweI GCATC 2 cut(s) 286, 299
MaeI CTAG 1 cut(s) 167
MaeIII GTNAC 2 cut(s) 37, 538
MalI GATC 2 cut(s) 104, 519
MboI GATC 2 cut(s) 102, 517
MluCI AATT 5 cut(s) 227, 456, 612, 692, 724
MlyI GAGTC 1 cut(s) 628
MmeI TCCRAC 1 cut(s) 396
MnlI CCTC 6 cut(s) 114, 209, 232, 601, 747, 757
MseI TTAA 2 cut(s) 374, 695
MslI CAYNNNNRTG 2 cut(s) 681, 734
MspR9I CCNGG 2 cut(s) 336, 523
MvaI CCWGG 2 cut(s) 336, 523
MwoI GCNNNNNNNGC 2 cut(s) 296, 319
NdeI CATATG 1 cut(s) 28
NdeII GATC 2 cut(s) 102, 517
NlaIII CATG 5 cut(s) 161, 246, 487, 585, 702
NmuCI GTSAC 2 cut(s) 37, 538
NsbI TGCGCA 1 cut(s) 84
NspI RCATGY 3 cut(s) 246, 585, 702
PciI ACATGT 1 cut(s) 698
PfeI GAWTC 1 cut(s) 124
PfoI TCCNGGA 1 cut(s) 334
PkrI GCNGC 1 cut(s) 301
PleI GAGTC 1 cut(s) 627
PpsI GAGTC 1 cut(s) 627
PscI ACATGT 1 cut(s) 698
Psp6I CCWGG 2 cut(s) 334, 521
PspFI CCCAGC 1 cut(s) 267
PspGI CCWGG 2 cut(s) 334, 521
RsaI GTAC 1 cut(s) 317
RsaNI GTAC 1 cut(s) 316
RseI CAYNNNNRTG 2 cut(s) 681, 734
SalI GTCGAC 1 cut(s) 432
SaqAI TTAA 2 cut(s) 374, 695
SatI GCNGC 1 cut(s) 300
Sau3AI GATC 2 cut(s) 102, 517
ScaI AGTACT 1 cut(s) 317
SchI GAGTC 1 cut(s) 628
ScrFI CCNGG 2 cut(s) 336, 523
SfaNI GCATC 2 cut(s) 286, 299
SfcI CTRYAG 1 cut(s) 638
SmiMI CAYNNNNRTG 2 cut(s) 681, 734
SmlI CTYRAG 2 cut(s) 177, 592
SmoI CTYRAG 2 cut(s) 177, 592
Sse9I AATT 5 cut(s) 227, 456, 612, 692, 724
SsiI CCGC 1 cut(s) 300
SspMI CTAG 1 cut(s) 167
StyD4I CCNGG 2 cut(s) 334, 521
TaaI ACNGT 4 cut(s) 43, 151, 509, 544
TaqI TCGA 3 cut(s) 214, 433, 516
TasI AATT 5 cut(s) 227, 456, 612, 692, 724
TatI WGTACW 1 cut(s) 315
TauI GCSGC 1 cut(s) 302
TfiI GAWTC 1 cut(s) 124
Tru1I TTAA 2 cut(s) 374, 695
Tru9I TTAA 2 cut(s) 374, 695
TscAI CASTG 3 cut(s) 156, 547, 712
TseFI GTSAC 2 cut(s) 37, 538
Tsp45I GTSAC 2 cut(s) 37, 538
TspDTI ATGAA 1 cut(s) 472
TspRI CASTG 3 cut(s) 156, 547, 712
XagI CCTNNNNNAGG 1 cut(s) 751
XapI RAATTY 1 cut(s) 456
XceI RCATGY 3 cut(s) 246, 585, 702
XmiI GTMKAC 2 cut(s) 277, 433
XspI CTAG 1 cut(s) 167
ZrmI AGTACT 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.