Rmu_sc0001981.1_g000017

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001981.1
OG0000083
Physical Location & Seq
Forward (+)
59630 .. 60374
745 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001981.1_g000017.1.cds

Sequence Viewer

Length: 531 bp
atggatttagatgacagttccactactttgggttgggaagacagacttcgaatagcattagacgctgcacaaggattggagtatctgcattatggtggtaagccacctataattcacagggatgtgaaatcagcaaacatcttgctgactgaaaacttccaagccaaagtagtatatgattttggcctatctagaaatttccctacagaccttatgactcatataacaattggcattgctggtactcccgggtaccttgaccttgagtactacctaacaagcaggttaaatgagaaaagtgatgtttatagctttgggattgtgctgttggaaattatcacaaaccgacccgttatatcaggaactatagagagaattcacattagtcaatgggttgcttccatgcttgcgcaaggagacatttacagtattgttgatccaagattagagagaattcgtagctaccattattatagatttggtaggaagtttttgcttacctttaaaatagaatcgattatgatgttatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

176

Amino Acids

20.23

Weight (kDa)

5.93

Isoelectric Point (pI)

39.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000083)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07560 AT1G51790 AT1G51790 AT1G51790 AT1G51800 AT1G51805 AT1G51805 AT1G51810 AT1G51820 AT1G51820 AT1G51830 AT1G51830 AT1G51840 AT1G51840 AT1G51840 AT1G51840 AT1G51840 AT1G51850 AT1G51850 AT1G51860 AT1G51860 AT1G51870 AT1G51870 AT1G51880 AT1G51880 AT1G51880 AT1G51890 AT1G51890 AT1G51890 AT1G51890 AT1G51890 AT1G51910 AT2G04300 AT2G04300 AT2G28960 AT2G28960 AT2G28970 AT2G28970 AT2G28990 AT2G28990 AT2G29000 AT3G21340 AT3G46350 AT5G59616 AT5G59650 AT5G59650 AT5G59660 AT5G59660 AT5G59660 AT5G59670 AT5G59670 AT5G59680
fragaria_vesca FvH4_2g03270 FvH4_3g21300 FvH4_6g32660 FvH4_6g32660 FvH4_6g32670 FvH4_6g32670 FvH4_6g32690 FvH4_6g32690 FvH4_6g32691 FvH4_6g32700 FvH4_6g32740 FvH4_6g32750 FvH4_6g33210 FvH4_6g33210 FvH4_7g24270 FvH4_7g24280 FvH4_7g24291 FvH4_7g24300
malus_domestica MD09G1198400.v1.1 MD09G1198600.v1.1 MD09G1199100.v1.1 MD09G1199200.v1.1 MD09G1199300.v1.1 MD09G1199500.v1.1 MD09G1199600.v1.1 MD17G1179300.v1.1 MD17G1180200.v1.1 MD17G1266000.v1.1
prunus_persica Prupe.1G438900_v2.0.a1 Prupe.1G439000_v2.0.a1 Prupe.1G439100_v2.0.a1 Prupe.3G019400_v2.0.a1 Prupe.3G021900_v2.0.a1 Prupe.3G054500_v2.0.a1 Prupe.3G054500_v2.0.a1 Prupe.3G055100_v2.0.a1 Prupe.3G055400_v2.0.a1 Prupe.3G055500_v2.0.a1 Prupe.3G055600_v2.0.a1 Prupe.3G055700_v2.0.a1 Prupe.3G055800_v2.0.a1 Prupe.3G055900_v2.0.a1 Prupe.3G055900_v2.0.a1 Prupe.3G056000_v2.0.a1 Prupe.3G056000_v2.0.a1 Prupe.3G056100_v2.0.a1 Prupe.3G209600_v2.0.a1 Prupe.3G209700_v2.0.a1 Prupe.6G291100_v2.0.a1 Prupe.7G208900_v2.0.a1 Prupe.8G038300_v2.0.a1
pyrus_communis pycom09g11570 pycom09g11580 pycom09g11610 pycom09g11630 pycom09g11640 pycom17g18840 pycom17g18910 pycom17g18930 pycom17g18940
rosa_chinensis RchiOBHm_Chr1g0317521 RchiOBHm_Chr1g0317541 RchiOBHm_Chr2g0123351 RchiOBHm_Chr2g0141181 RchiOBHm_Chr2g0141191 RchiOBHm_Chr2g0141211 RchiOBHm_Chr2g0141221 RchiOBHm_Chr2g0141261 RchiOBHm_Chr2g0141271 RchiOBHm_Chr2g0141311 RchiOBHm_Chr2g0141331 RchiOBHm_Chr2g0141371 RchiOBHm_Chr2g0141391 RchiOBHm_Chr2g0141401 RchiOBHm_Chr2g0141431 RchiOBHm_Chr2g0141481 RchiOBHm_Chr2g0141491 RchiOBHm_Chr2g0141591 RchiOBHm_Chr2g0141601 RchiOBHm_Chr2g0141611 RchiOBHm_Chr2g0141631 RchiOBHm_Chr2g0141641 RchiOBHm_Chr2g0141661 RchiOBHm_Chr2g0141681 RchiOBHm_Chr2g0141701 RchiOBHm_Chr2g0141781 RchiOBHm_Chr2g0141811 RchiOBHm_Chr2g0141821 RchiOBHm_Chr3g0479311 RchiOBHm_Chr3g0495751 RchiOBHm_Chr4g0404741 RchiOBHm_Chr4g0410341 RchiOBHm_Chr4g0418371 RchiOBHm_Chr4g0438651 RchiOBHm_Chr5g0036411 RchiOBHm_Chr5g0036491 RchiOBHm_Chr5g0042391 RchiOBHm_Chr6g0279871 RchiOBHm_Chr7g0192921 RchiOBHm_Chr7g0214901 RchiOBHm_Chr7g0234931
rosa_laevigata RLG00000003432 RLG00000008806 RLG00000013062 RLG00000019514 RLG00000019923 RLG00000019924 RLG00000019925 RLG00000019930 RLG00000019931 RLG00000019934 RLG00000019937 RLG00000019938 RLG00000033697
rosa_multiflora Rmu_co8002302.1_g000001 Rmu_sc0000147.1_g000031 Rmu_sc0000463.1_g000005 Rmu_sc0000712.1_g000003 Rmu_sc0001483.1_g000017 Rmu_sc0001554.1_g000002 Rmu_sc0001554.1_g000005 Rmu_sc0001554.1_g000008 Rmu_sc0001981.1_g000017 Rmu_sc0002040.1_g000056 Rmu_sc0002755.1_g000018 Rmu_sc0002804.1_g000016 Rmu_sc0002928.1_g000015 Rmu_sc0003040.1_g000008 Rmu_sc0003040.1_g000018 Rmu_sc0004512.1_g000001 Rmu_sc0004512.1_g000004 Rmu_sc0005507.1_g000001 Rmu_sc0005507.1_g000009 Rmu_sc0005507.1_g000033 Rmu_sc0005507.1_g000037 Rmu_sc0005507.1_g000043 Rmu_sc0005507.1_g000047 Rmu_sc0006318.1_g000004 Rmu_sc0006318.1_g000014 Rmu_sc0006318.1_g000021 Rmu_sc0006556.1_g000001 Rmu_sc0007208.1_g000002 Rmu_sc0007208.1_g000003 Rmu_sc0007208.1_g000006 Rmu_sc0007208.1_g000008
rosa_roxburghii Rroxscaffold_1G00044430 Rroxscaffold_2G00103420 Rroxscaffold_2G00103470 Rroxscaffold_2G00103490 Rroxscaffold_2G00103500 Rroxscaffold_2G00103520 Rroxscaffold_2G00103530 Rroxscaffold_2G00103540 Rroxscaffold_2G00103550 Rroxscaffold_2G00103570 Rroxscaffold_2G00103770 Rroxscaffold_2G00103780 Rroxscaffold_2G00103800 Rroxscaffold_2G00103820 Rroxscaffold_2G00103860 Rroxscaffold_2G00103890 Rroxscaffold_2G00103930 Rroxscaffold_2G00103940 Rroxscaffold_2G00104010 Rroxscaffold_2G00104030 Rroxscaffold_2G00104050 Rroxscaffold_2G00104060 Rroxscaffold_2G00104070 Rroxscaffold_2G00104090 Rroxscaffold_2G00104100 Rroxscaffold_2G00104120 Rroxscaffold_2G00104130 Rroxscaffold_4G00331710
rosa_rugosa Rorug02G0367500 Rorug02G0367500 Rorug02G0367600 Rorug02G0367800 Rorug02G0367800 Rorug02G0367900 Rorug02G0368100 Rorug02G0368100 Rorug02G0368100 Rorug02G0368200 Rorug02G0368700 Rorug02G0368900 Rorug05G0155600 Rorug05G0155700 Rorug05G0155800 Rorug05G0156700 Rorug05G0157300
rosa_samantha Rh1AG028000 Rh2AG418700 Rh2AG418900 Rh2AG419000 Rh2AG419100 Rh2AG419400 Rh2AG419600 Rh2AG419800 Rh2AG420400 Rh2AG421000 Rh2BG428500 Rh2BG428600 Rh2BG428800 Rh2BG428900 Rh2BG429300 Rh2BG429400 Rh2BG429700 Rh2BG429900 Rh2BG430000 Rh2BG430700 Rh2CG405100 Rh2CG405200 Rh2CG405300 Rh2CG405500 Rh2CG405600 Rh2CG405700 Rh2CG406000 Rh2CG406100 Rh2CG406300 Rh2CG406600 Rh2CG406700 Rh2CG407500 Rh2CG408100 Rh2DG438500 Rh3DG123900 Rh3DG124000 Rh5BG249700 Rh5BG482500 Rh5CG281500 Rh5CG507300 Rh7DG133300
rosa_wichuraiana Rw0G019720 Rw0G019730 Rw0G019750 Rw0G023010 Rw2G034340 Rw2G034350 Rw2G034370 Rw2G034380 Rw2G034400 Rw2G034430 Rw2G034470 Rw2G034480 Rw2G034510 Rw5G022890 Rw5G026410 Rw5G032710 Rw5G042850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 411
Acc36I ACCTGC 1 cut(s) 273
Acc65I GGTACC 1 cut(s) 252
AccB1I GGYRCC 1 cut(s) 252
AclWI GGATC 1 cut(s) 431
AcsI RAATTY 3 cut(s) 196, 375, 453
AfaI GTAC 3 cut(s) 244, 254, 269
AluBI AGCT 2 cut(s) 312, 462
AluI AGCT 2 cut(s) 312, 462
Alw26I GTCTC 1 cut(s) 411
AlwI GGATC 1 cut(s) 431
Ama87I CYCGRG 1 cut(s) 248
AoxI GGCC 1 cut(s) 184
ApeKI GCWGC 1 cut(s) 65
ApoI RAATTY 3 cut(s) 196, 375, 453
Asp718I GGTACC 1 cut(s) 252
AspLEI GCGC 1 cut(s) 412
AsuC2I CCSGG 2 cut(s) 249, 250
AsuII TTCGAA 1 cut(s) 49
AvaI CYCGRG 1 cut(s) 248
BanI GGYRCC 1 cut(s) 252
BbsI GAAGAC 1 cut(s) 45
BbvI GCAGC 1 cut(s) 52
BcnI CCSGG 2 cut(s) 249, 250
BcoDI GTCTC 1 cut(s) 411
BfaI CTAG 1 cut(s) 192
BfmI CTRYAG 2 cut(s) 204, 366
BfuAI ACCTGC 1 cut(s) 273
BisI GCNGC 1 cut(s) 66
BlsI GCNGC 1 cut(s) 67
BmcAI AGTACT 1 cut(s) 269
Bme1390I CCNGG 2 cut(s) 249, 250
BmeT110I CYCGRG 1 cut(s) 248
BmiI GGNNCC 1 cut(s) 254
BmrFI CCNGG 2 cut(s) 249, 250
BpiI GAAGAC 1 cut(s) 45
Bpu14I TTCGAA 1 cut(s) 49
BpuEI CTTGAG 1 cut(s) 284
BpuMI CCSGG 2 cut(s) 249, 250
Bsa29I ATCGAT 1 cut(s) 515
BsaJI CCNNGG 1 cut(s) 248
Bse3DI GCAATG 1 cut(s) 234
BseCI ATCGAT 1 cut(s) 515
BseDI CCNNGG 1 cut(s) 248
BseGI GGATG 1 cut(s) 127
BseMI GCAATG 1 cut(s) 234
BseXI GCAGC 1 cut(s) 52
BsgI GTGCAG 1 cut(s) 51
BshFI GGCC 1 cut(s) 186
BshNI GGYRCC 1 cut(s) 252
BshVI ATCGAT 1 cut(s) 515
BsiHKCI CYCGRG 1 cut(s) 248
BsiSI CCGG 1 cut(s) 249
BsmAI GTCTC 1 cut(s) 411
BsnI GGCC 1 cut(s) 186
BsoBI CYCGRG 1 cut(s) 248
Bsp119I TTCGAA 1 cut(s) 49
Bsp143I GATC 1 cut(s) 436
BspANI GGCC 1 cut(s) 186
BspDI ATCGAT 1 cut(s) 515
BspLI GGNNCC 1 cut(s) 254
BspMI ACCTGC 1 cut(s) 273
BspPI GGATC 1 cut(s) 431
BspT104I TTCGAA 1 cut(s) 49
BspT107I GGYRCC 1 cut(s) 252
BsrDI GCAATG 1 cut(s) 234
BssECI CCNNGG 1 cut(s) 248
BssMI GATC 1 cut(s) 436
Bst4CI ACNGT 2 cut(s) 17, 428
BstBI TTCGAA 1 cut(s) 49
BstC8I GCNNGC 1 cut(s) 408
BstF5I GGATG 1 cut(s) 127
BstHHI GCGC 1 cut(s) 412
BstKTI GATC 1 cut(s) 439
BstMAI GTCTC 1 cut(s) 411
BstMBI GATC 1 cut(s) 436
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstSCI CCNGG 2 cut(s) 247, 248
BstSFI CTRYAG 2 cut(s) 204, 366
BstV1I GCAGC 1 cut(s) 52
BstV2I GAAGAC 1 cut(s) 45
BstXI CCANNNNNNTGG 1 cut(s) 28
Bsu15I ATCGAT 1 cut(s) 515
BsuRI GGCC 1 cut(s) 186
BsuTUI ATCGAT 1 cut(s) 515
BtsCI GGATG 1 cut(s) 127
BveI ACCTGC 1 cut(s) 273
Cac8I GCNNGC 1 cut(s) 408
CfoI GCGC 1 cut(s) 412
Cfr9I CCCGGG 1 cut(s) 248
ClaI ATCGAT 1 cut(s) 515
CseI GACGC 1 cut(s) 71
Csp6I GTAC 3 cut(s) 243, 253, 268
CviAII CATG 1 cut(s) 403
CviJI RGCY 5 cut(s) 103, 164, 186, 312, 462
CviKI_1 RGCY 5 cut(s) 103, 164, 186, 312, 462
CviQI GTAC 3 cut(s) 243, 253, 268
DpnI GATC 1 cut(s) 438
DpnII GATC 1 cut(s) 436
DraI TTTAAA 1 cut(s) 505
Eco88I CYCGRG 1 cut(s) 248
EcoRI GAATTC 2 cut(s) 375, 453
FaeI CATG 1 cut(s) 406
FalI AAGNNNNNCTT 2 cut(s) 30, 62
FatI CATG 1 cut(s) 402
Fnu4HI GCNGC 1 cut(s) 66
FokI GGATG 1 cut(s) 134
Fsp4HI GCNGC 1 cut(s) 66
FspBI CTAG 1 cut(s) 192
FspI TGCGCA 1 cut(s) 411
GlaI GCGC 1 cut(s) 411
GluI GCNGC 1 cut(s) 66
HaeIII GGCC 1 cut(s) 186
HapII CCGG 1 cut(s) 249
HgaI GACGC 1 cut(s) 71
HhaI GCGC 1 cut(s) 412
Hin1II CATG 1 cut(s) 406
Hin6I GCGC 1 cut(s) 410
HinP1I GCGC 1 cut(s) 410
HinfI GANTC 2 cut(s) 217, 512
HpaII CCGG 1 cut(s) 249
Hpy188III TCNNGA 2 cut(s) 192, 360
HpyCH4III ACNGT 2 cut(s) 17, 428
HpyCH4V TGCA 2 cut(s) 68, 88
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
Hsp92II CATG 1 cut(s) 406
HspAI GCGC 1 cut(s) 410
KpnI GGTACC 1 cut(s) 256
Kzo9I GATC 1 cut(s) 436
LpnPI CCDG 5 cut(s) 103, 225, 262, 268, 345
Lsp1109I GCAGC 1 cut(s) 52
MaeI CTAG 1 cut(s) 192
MalI GATC 1 cut(s) 438
MboI GATC 1 cut(s) 436
MboII GAAGA 1 cut(s) 50
MfeI CAATTG 1 cut(s) 228
MluCI AATT 6 cut(s) 111, 196, 228, 333, 375, 453
MlyI GAGTC 1 cut(s) 211
MmeI TCCRAC 1 cut(s) 309
MseI TTAA 2 cut(s) 287, 504
MslI CAYNNNNRTG 2 cut(s) 93, 120
MspI CCGG 1 cut(s) 249
MspR9I CCNGG 2 cut(s) 249, 250
MunI CAATTG 1 cut(s) 228
MwoI GCNNNNNNNGC 1 cut(s) 62
NciI CCSGG 2 cut(s) 249, 250
NdeII GATC 1 cut(s) 436
NlaIII CATG 1 cut(s) 406
NlaIV GGNNCC 1 cut(s) 254
NsbI TGCGCA 1 cut(s) 411
NspV TTCGAA 1 cut(s) 49
PfeI GAWTC 1 cut(s) 512
PkrI GCNGC 1 cut(s) 67
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
PspN4I GGNNCC 1 cut(s) 254
RsaI GTAC 3 cut(s) 244, 254, 269
RsaNI GTAC 3 cut(s) 243, 253, 268
RseI CAYNNNNRTG 2 cut(s) 93, 120
SaqAI TTAA 2 cut(s) 287, 504
SatI GCNGC 1 cut(s) 66
Sau3AI GATC 1 cut(s) 436
ScaI AGTACT 1 cut(s) 269
SchI GAGTC 1 cut(s) 211
ScrFI CCNGG 2 cut(s) 249, 250
SetI ASST 9 cut(s) 109, 213, 258, 264, 276, 287, 314, 464, 503
SfcI CTRYAG 2 cut(s) 204, 366
SfuI TTCGAA 1 cut(s) 49
SmaI CCCGGG 1 cut(s) 250
SmiMI CAYNNNNRTG 2 cut(s) 93, 120
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
Sse9I AATT 6 cut(s) 111, 196, 228, 333, 375, 453
SspMI CTAG 1 cut(s) 192
StyD4I CCNGG 2 cut(s) 247, 248
TaaI ACNGT 2 cut(s) 17, 428
TaqI TCGA 2 cut(s) 49, 515
TasI AATT 6 cut(s) 111, 196, 228, 333, 375, 453
TatI WGTACW 1 cut(s) 267
TfiI GAWTC 1 cut(s) 512
Tru1I TTAA 2 cut(s) 287, 504
Tru9I TTAA 2 cut(s) 287, 504
TseI GCWGC 1 cut(s) 65
TspMI CCCGGG 1 cut(s) 248
XapI RAATTY 3 cut(s) 196, 375, 453
XbaI TCTAGA 1 cut(s) 191
XmaI CCCGGG 1 cut(s) 248
XspI CTAG 1 cut(s) 192
ZrmI AGTACT 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.