Rroxscaffold_2G00104030

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000083
Physical Location & Seq
Forward (+)
27126509 .. 27131623
5115 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00104030.1

Sequence Viewer

Length: 2652 bp
ATGATGTCAATTACATTCATGCAATTCCTCTTTGCTTTTAGTCTTATGCTCCTTGTTCATGCCCAAGATCAATCAGGCTTCATCAGCATTGATTGCGGCATAGCTGCAAATTTTAGTTATACTGACGTGAACACAGGCATCAAGTACATTTCAGATGCAAGATTCATAGACACTGGTGAAAGTAAGTCAGTATGGCCCAATCAAAGAAATAACTACACACAGCCATACTGGAATCTTAGGAGATTTCCAGAAGGAACCAGGAACTGCTACAAAATAAATGTCACAAGTGGGATGAAGTATTTGATTCGAGCAGGTTTCTTTTATGGAAATTATGACGGCGATAATAAGTTACCAGTATTCGAACTACATCTTGGAGCTAACTGGTGGGATACTGTGAGGTTTAAGGATGCATCAACTGACAAGAAAAAGGAGCTCATACATACCCCCTTGCGAAATTACATTCATGTTTGTTTGGTGGACATAGGCTCTGGGATACCATTTATATCAGCTATAGAGCTAAGGCCTTTACCTAATGAGACTTATCAAACACAAACGGGTTCCTTAGAACTTGTTTCGCGGTATGACACTGGTCAAATGGGTACTCGTAGAGGATACAGGTTTCCTTTTGATATTTTTGATCGCGTCTGGTCGCGTGCATATAACGTCGATGATTCGGCACAATTAAGTACACCATTGACTGTTGACACTAATTATCACAATGAATACCATCCACCGTCTGATGTCATGCGTACTGCCGCCACGCCGAGAGATCCAAATGATCCTTTGAATATCCAGTTGCCGCCTTCTAATGATATCAATGCAGAATATCATATTTACATGCACTTTGCAGAAGTTGAAAAGCTCCAACCCAACCAGTTTAGACGGTTCAACATCACTAGGAATGGAGACCCCTTTTATGGGTCAGTTACTCCTAGTTACTTGCACACAGGTACCATTTCAAGCTCTAAAGCTTTTGGCGGACAACAAAATAATTTTTCAATCTTCAAGGCTGAGAACTCTAGTCTTCCACCCATACTCAATGCTTTTGAGATTTATAAGGTGAAAGAATTCTCAGAATTGGATACAGACCAAGAAGATGTTGTTGCAATCACAAACATCAAGGAAACTTATAAAATTAGGAAAAACTGGCAAGGAGATCCATGTTCCCCTCAAGCTTACTCATGGGAGGGCATAAACTGTAGCTATCATGCTTACGAGCCCCTAAGACGAATTACGACCTTGAACTTGTCCTCGAATGGATTAACAGGGGAGATAGCTCTTTCTATATCCAATCTGGCAAAGATACAAACTCTGGATTTATCAAACAACAACTTAACAGGTTCAATTCCAGAGTTTTTGTCTCAATTACAAGATCTAAATTTCATAAACTTGGAGAAAAACAAGCTTACAGGCTCAGTTCCAGTTGGATTAATTGAGAAGAGGAAGAATGGTTTGCTATTACTAAGTTTGTGCCAAAATCTAAATCTATCCGGAAACGTTCCTTGCAAGTTAAAGAAGAACCACAAATTCATTATTCTCGAAGTGGTGTCAGTCTCTGGAATTTCCATCCTCTTGTCAATTGTAGCAGCTATCTTCTGCTGGGGTCTTAAAAGGAAAAAACAACAGGGAGATGTCACAAATGTGAAAGCCACTATTCAATTGGGCTCAATGGAATCGACAAAACGAAAATTTACCTACTCTGAGATACTCAAGATTACCAACAACTTTGAAAGGATTCTTGGAAAAGGTGGATTCGGAACCGTTTATCATGGTTACCTAGACAAGACTCAAGTGGCTATCAAGATGCTTTCACCGTCAGCAGTTCAAGGATTTCAACAATTTCATGCAGAGGTTGATCTTCTTATGAGGGTTCATCACAAAAACTTGACAAATCTTGTTGGATATTGCAATGATAAAACTAGAGTAGGCCTGGTCTACGAATATATGTGCAATGGAAACTTACAAGAACATCTTTCAGATAGTAGTTCAAATATCTTGACTTGGAAAGAACGACTTCGAATAGCAATAGATGCTGCACAAGGATTGGAATATCTGCACTATGGTTGCAAGCCACCCATAATCCACAGGGATATAAAATCAACAAATATCTTGCTGAATGAAAATCTTCAAGCTAAACTATCAGATTTTGGCCTATCCAAGATTTTTCCAACTAATGATGGGACTCATGGGAGTCATGTATCAACTCTTGTTGCTGGCACTCCTGGGTACCTCGACCCCGAATACTACCTATCAAGTAGGTTAAATGAGAAGAGTGATGTTTATAGCTTTGGGATTGTGCTGCTAGAAATCATTACAAGTCGACCTGTTTTATCAAAACTACAAGAGAGAATTCACATTAGCCAATGGGTTGGTTTCATGCTTGAGAAAGGAGATATTTTCAGTATTGTTGATTCAAGGTTAAAGGAAAATTTCCATGCTAACTCAGTCTGGAAAGCTGTGGAAATAGCAATGGCATGTGTGTCTCCAAATGTCATCGACAGGCCAATCATGAGTGAAGTGATTGTGGAACTAAAGGAGTCTTTGGCAACAGAACTGGCTCTAACAAAGCAGAGCCATGAAACTGAATCCAGAATTTCCATTGAGATCATGTCTAACGATTCCATTGCTATGCTTTCTCCCTCAGTTAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

883

Amino Acids

99.79

Weight (kDa)

7.09

Isoelectric Point (pI)

37.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 30 - 354 3e-112 Malectin-like domain
LRR_8 PF13855 409 - 469 9.1e-06 Leucine rich repeat
PK_Tyr_Ser-Thr PF07714 576 - 842 2.7e-45 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 576 - 839 3.1e-41 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000083)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07560 AT1G51790 AT1G51790 AT1G51790 AT1G51800 AT1G51805 AT1G51805 AT1G51810 AT1G51820 AT1G51820 AT1G51830 AT1G51830 AT1G51840 AT1G51840 AT1G51840 AT1G51840 AT1G51840 AT1G51850 AT1G51850 AT1G51860 AT1G51860 AT1G51870 AT1G51870 AT1G51880 AT1G51880 AT1G51880 AT1G51890 AT1G51890 AT1G51890 AT1G51890 AT1G51890 AT1G51910 AT2G04300 AT2G04300 AT2G28960 AT2G28960 AT2G28970 AT2G28970 AT2G28990 AT2G28990 AT2G29000 AT3G21340 AT3G46350 AT5G59616 AT5G59650 AT5G59650 AT5G59660 AT5G59660 AT5G59660 AT5G59670 AT5G59670 AT5G59680
fragaria_vesca FvH4_2g03270 FvH4_3g21300 FvH4_6g32660 FvH4_6g32660 FvH4_6g32670 FvH4_6g32670 FvH4_6g32690 FvH4_6g32690 FvH4_6g32691 FvH4_6g32700 FvH4_6g32740 FvH4_6g32750 FvH4_6g33210 FvH4_6g33210 FvH4_7g24270 FvH4_7g24280 FvH4_7g24291 FvH4_7g24300
malus_domestica MD09G1198400.v1.1 MD09G1198600.v1.1 MD09G1199100.v1.1 MD09G1199200.v1.1 MD09G1199300.v1.1 MD09G1199500.v1.1 MD09G1199600.v1.1 MD17G1179300.v1.1 MD17G1180200.v1.1 MD17G1266000.v1.1
prunus_persica Prupe.1G438900_v2.0.a1 Prupe.1G439000_v2.0.a1 Prupe.1G439100_v2.0.a1 Prupe.3G019400_v2.0.a1 Prupe.3G021900_v2.0.a1 Prupe.3G054500_v2.0.a1 Prupe.3G054500_v2.0.a1 Prupe.3G055100_v2.0.a1 Prupe.3G055400_v2.0.a1 Prupe.3G055500_v2.0.a1 Prupe.3G055600_v2.0.a1 Prupe.3G055700_v2.0.a1 Prupe.3G055800_v2.0.a1 Prupe.3G055900_v2.0.a1 Prupe.3G055900_v2.0.a1 Prupe.3G056000_v2.0.a1 Prupe.3G056000_v2.0.a1 Prupe.3G056100_v2.0.a1 Prupe.3G209600_v2.0.a1 Prupe.3G209700_v2.0.a1 Prupe.6G291100_v2.0.a1 Prupe.7G208900_v2.0.a1 Prupe.8G038300_v2.0.a1
pyrus_communis pycom09g11570 pycom09g11580 pycom09g11610 pycom09g11630 pycom09g11640 pycom17g18840 pycom17g18910 pycom17g18930 pycom17g18940
rosa_chinensis RchiOBHm_Chr1g0317521 RchiOBHm_Chr1g0317541 RchiOBHm_Chr2g0123351 RchiOBHm_Chr2g0141181 RchiOBHm_Chr2g0141191 RchiOBHm_Chr2g0141211 RchiOBHm_Chr2g0141221 RchiOBHm_Chr2g0141261 RchiOBHm_Chr2g0141271 RchiOBHm_Chr2g0141311 RchiOBHm_Chr2g0141331 RchiOBHm_Chr2g0141371 RchiOBHm_Chr2g0141391 RchiOBHm_Chr2g0141401 RchiOBHm_Chr2g0141431 RchiOBHm_Chr2g0141481 RchiOBHm_Chr2g0141491 RchiOBHm_Chr2g0141591 RchiOBHm_Chr2g0141601 RchiOBHm_Chr2g0141611 RchiOBHm_Chr2g0141631 RchiOBHm_Chr2g0141641 RchiOBHm_Chr2g0141661 RchiOBHm_Chr2g0141681 RchiOBHm_Chr2g0141701 RchiOBHm_Chr2g0141781 RchiOBHm_Chr2g0141811 RchiOBHm_Chr2g0141821 RchiOBHm_Chr3g0479311 RchiOBHm_Chr3g0495751 RchiOBHm_Chr4g0404741 RchiOBHm_Chr4g0410341 RchiOBHm_Chr4g0418371 RchiOBHm_Chr4g0438651 RchiOBHm_Chr5g0036411 RchiOBHm_Chr5g0036491 RchiOBHm_Chr5g0042391 RchiOBHm_Chr6g0279871 RchiOBHm_Chr7g0192921 RchiOBHm_Chr7g0214901 RchiOBHm_Chr7g0234931
rosa_laevigata RLG00000003432 RLG00000008806 RLG00000013062 RLG00000019514 RLG00000019923 RLG00000019924 RLG00000019925 RLG00000019930 RLG00000019931 RLG00000019934 RLG00000019937 RLG00000019938 RLG00000033697
rosa_multiflora Rmu_co8002302.1_g000001 Rmu_sc0000147.1_g000031 Rmu_sc0000463.1_g000005 Rmu_sc0000712.1_g000003 Rmu_sc0001483.1_g000017 Rmu_sc0001554.1_g000002 Rmu_sc0001554.1_g000005 Rmu_sc0001554.1_g000008 Rmu_sc0001981.1_g000017 Rmu_sc0002040.1_g000056 Rmu_sc0002755.1_g000018 Rmu_sc0002804.1_g000016 Rmu_sc0002928.1_g000015 Rmu_sc0003040.1_g000008 Rmu_sc0003040.1_g000018 Rmu_sc0004512.1_g000001 Rmu_sc0004512.1_g000004 Rmu_sc0005507.1_g000001 Rmu_sc0005507.1_g000009 Rmu_sc0005507.1_g000033 Rmu_sc0005507.1_g000037 Rmu_sc0005507.1_g000043 Rmu_sc0005507.1_g000047 Rmu_sc0006318.1_g000004 Rmu_sc0006318.1_g000014 Rmu_sc0006318.1_g000021 Rmu_sc0006556.1_g000001 Rmu_sc0007208.1_g000002 Rmu_sc0007208.1_g000003 Rmu_sc0007208.1_g000006 Rmu_sc0007208.1_g000008
rosa_roxburghii Rroxscaffold_1G00044430 Rroxscaffold_2G00103420 Rroxscaffold_2G00103470 Rroxscaffold_2G00103490 Rroxscaffold_2G00103500 Rroxscaffold_2G00103520 Rroxscaffold_2G00103530 Rroxscaffold_2G00103540 Rroxscaffold_2G00103550 Rroxscaffold_2G00103570 Rroxscaffold_2G00103770 Rroxscaffold_2G00103780 Rroxscaffold_2G00103800 Rroxscaffold_2G00103820 Rroxscaffold_2G00103860 Rroxscaffold_2G00103890 Rroxscaffold_2G00103930 Rroxscaffold_2G00103940 Rroxscaffold_2G00104010 Rroxscaffold_2G00104030 Rroxscaffold_2G00104050 Rroxscaffold_2G00104060 Rroxscaffold_2G00104070 Rroxscaffold_2G00104090 Rroxscaffold_2G00104100 Rroxscaffold_2G00104120 Rroxscaffold_2G00104130 Rroxscaffold_4G00331710
rosa_rugosa Rorug02G0367500 Rorug02G0367500 Rorug02G0367600 Rorug02G0367800 Rorug02G0367800 Rorug02G0367900 Rorug02G0368100 Rorug02G0368100 Rorug02G0368100 Rorug02G0368200 Rorug02G0368700 Rorug02G0368900 Rorug05G0155600 Rorug05G0155700 Rorug05G0155800 Rorug05G0156700 Rorug05G0157300
rosa_samantha Rh1AG028000 Rh2AG418700 Rh2AG418900 Rh2AG419000 Rh2AG419100 Rh2AG419400 Rh2AG419600 Rh2AG419800 Rh2AG420400 Rh2AG421000 Rh2BG428500 Rh2BG428600 Rh2BG428800 Rh2BG428900 Rh2BG429300 Rh2BG429400 Rh2BG429700 Rh2BG429900 Rh2BG430000 Rh2BG430700 Rh2CG405100 Rh2CG405200 Rh2CG405300 Rh2CG405500 Rh2CG405600 Rh2CG405700 Rh2CG406000 Rh2CG406100 Rh2CG406300 Rh2CG406600 Rh2CG406700 Rh2CG407500 Rh2CG408100 Rh2DG438500 Rh3DG123900 Rh3DG124000 Rh5BG249700 Rh5BG482500 Rh5CG281500 Rh5CG507300 Rh7DG133300
rosa_wichuraiana Rw0G019720 Rw0G019730 Rw0G019750 Rw0G023010 Rw2G034340 Rw2G034350 Rw2G034370 Rw2G034380 Rw2G034400 Rw2G034430 Rw2G034470 Rw2G034480 Rw2G034510 Rw5G022890 Rw5G026410 Rw5G032710 Rw5G042850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1056, 1131
Acc36I ACCTGC 1 cut(s) 302
Acc65I GGTACC 2 cut(s) 950, 2226
AccB1I GGYRCC 2 cut(s) 950, 2226
AccI GTMKAC 2 cut(s) 1935, 2320
AccII CGCG 3 cut(s) 577, 642, 652
AccIII TCCGGA 1 cut(s) 1490
AciI CCGC 5 cut(s) 96, 577, 756, 800, 978
AclI AACGTT 1 cut(s) 1497
AclWI GGATC 3 cut(s) 764, 773, 1151
AcsI RAATTY 9 cut(s) 109, 1067, 1378, 1526, 1560, 1688, 2349, 2428, 2592
AfaI GTAC 6 cut(s) 146, 601, 688, 751, 952, 2228
AfiI CCNNNNNNNGG 3 cut(s) 917, 918, 2646
AjiI CACGTC 1 cut(s) 127
AjnI CCWGG 3 cut(s) 257, 1929, 2221
AjuI GAANNNNNNNTTGG 4 cut(s) 354, 386, 1722, 1754
AleI CACNNNNGTG 1 cut(s) 1640
Alw21I GWGCWC 1 cut(s) 435
Alw26I GTCTC 5 cut(s) 530, 900, 1365, 1558, 2487
AlwI GGATC 3 cut(s) 764, 773, 1151
AlwNI CAGNNNCTG 2 cut(s) 264, 1556
Aor13HI TCCGGA 1 cut(s) 1490
AoxI GGCC 5 cut(s) 194, 521, 1927, 2149, 2501
ApeKI GCWGC 4 cut(s) 104, 1586, 2033, 2299
ApoI RAATTY 9 cut(s) 109, 1067, 1378, 1526, 1560, 1688, 2349, 2428, 2592
ArsI GACNNNNNNTTYG 2 cut(s) 264, 296
AseI ATTAAT 1 cut(s) 1430
Asp700I GAANNNNTTC 4 cut(s) 1067, 1734, 2013, 2124
Asp718I GGTACC 2 cut(s) 950, 2226
AspS9I GGNCC 1 cut(s) 195
AsuHPI GGTGA 3 cut(s) 188, 1072, 1803
AsuII TTCGAA 2 cut(s) 360, 2017
BaeI ACNNNNGTAYC 2 cut(s) 934, 967
BanI GGYRCC 2 cut(s) 950, 2226
BanII GRGCYC 3 cut(s) 435, 1221, 1667
BbsI GAAGAC 1 cut(s) 1016
Bbv12I GWGCWC 1 cut(s) 435
BbvI GCAGC 4 cut(s) 91, 1598, 2020, 2286
BccI CCATC 3 cut(s) 735, 1574, 2171
BceAI ACGGC 1 cut(s) 352
BcgI CGANNNNNNTGC 2 cut(s) 2606, 2640
BciT130I CCWGG 3 cut(s) 259, 1931, 2223
BciVI GTATCC 4 cut(s) 382, 486, 605, 1075
BcoDI GTCTC 5 cut(s) 530, 900, 1365, 1558, 2487
BfaI CTAG 6 cut(s) 897, 933, 1020, 1778, 1920, 2303
BfmI CTRYAG 2 cut(s) 510, 1198
BfuAI ACCTGC 1 cut(s) 302
BfuI GTATCC 4 cut(s) 382, 486, 605, 1075
BglII AGATCT 1 cut(s) 1372
BisI GCNGC 7 cut(s) 97, 105, 756, 800, 1587, 2034, 2300
BlsI GCNGC 7 cut(s) 98, 106, 757, 801, 1588, 2035, 2301
Bme1390I CCNGG 3 cut(s) 259, 1931, 2223
BmgBI CACGTC 1 cut(s) 127
BmgT120I GGNCC 1 cut(s) 195
BmiI GGNNCC 5 cut(s) 256, 559, 952, 1759, 2228
BmrFI CCNGG 3 cut(s) 259, 1931, 2223
BmsI GCATC 6 cut(s) 145, 147, 397, 419, 1794, 2020
BoxI GACNNNNGTC 1 cut(s) 588
BpiI GAAGAC 1 cut(s) 1016
Bpu10I CCTNAGC 1 cut(s) 518
Bpu14I TTCGAA 2 cut(s) 360, 2017
BpuEI CTTGAG 4 cut(s) 1155, 1694, 1773, 2402
BsaI GGTCTC 1 cut(s) 900
BsaJI CCNNGG 1 cut(s) 2222
BsaWI WCCGGW 1 cut(s) 1490
Bsc4I CCNNNNNNNGG 3 cut(s) 917, 918, 2646
Bse3DI GCAATG 4 cut(s) 1915, 1957, 2475, 2622
BseAI TCCGGA 1 cut(s) 1490
BseBI CCWGG 3 cut(s) 259, 1931, 2223
BseDI CCNNGG 1 cut(s) 2222
BseGI GGATG 4 cut(s) 297, 412, 727, 1566
BseLI CCNNNNNNNGG 3 cut(s) 917, 918, 2646
BseMI GCAATG 4 cut(s) 1915, 1957, 2475, 2622
BseMII CTCAG 5 cut(s) 1002, 1086, 1428, 1692, 2457
BseXI GCAGC 4 cut(s) 91, 1598, 2020, 2286
BseYI CCCAGC 1 cut(s) 1599
BsgI GTGCAG 2 cut(s) 2019, 2039
Bsh1236I CGCG 3 cut(s) 577, 642, 652
BshFI GGCC 5 cut(s) 196, 523, 1929, 2151, 2503
BshNI GGYRCC 2 cut(s) 950, 2226
BsiHKAI GWGCWC 1 cut(s) 435
BsiSI CCGG 1 cut(s) 1491
BslFI GGGAC 1 cut(s) 2194
BslI CCNNNNNNNGG 3 cut(s) 917, 918, 2646
BsmAI GTCTC 5 cut(s) 530, 900, 1365, 1558, 2487
BsmFI GGGAC 1 cut(s) 2194
BsnI GGCC 5 cut(s) 196, 523, 1929, 2151, 2503
Bso31I GGTCTC 1 cut(s) 900
Bsp119I TTCGAA 2 cut(s) 360, 2017
Bsp1286I GDGCHC 3 cut(s) 435, 1221, 1667
Bsp13I TCCGGA 1 cut(s) 1490
Bsp143I GATC 8 cut(s) 67, 637, 769, 778, 1156, 1372, 1855, 2604
BspACI CCGC 5 cut(s) 96, 577, 756, 800, 978
BspANI GGCC 5 cut(s) 196, 523, 1929, 2151, 2503
BspCNI CTCAG 5 cut(s) 1003, 1085, 1427, 1693, 2456
BspEI TCCGGA 1 cut(s) 1490
BspFNI CGCG 3 cut(s) 577, 642, 652
BspHI TCATGA 1 cut(s) 2508
BspLI GGNNCC 5 cut(s) 256, 559, 952, 1759, 2228
BspMI ACCTGC 1 cut(s) 302
BspPI GGATC 3 cut(s) 764, 773, 1151
BspT104I TTCGAA 2 cut(s) 360, 2017
BspT107I GGYRCC 2 cut(s) 950, 2226
BspTNI GGTCTC 1 cut(s) 900
BsrDI GCAATG 4 cut(s) 1915, 1957, 2475, 2622
BssECI CCNNGG 1 cut(s) 2222
BssMI GATC 8 cut(s) 67, 637, 769, 778, 1156, 1372, 1855, 2604
Bst2UI CCWGG 3 cut(s) 259, 1931, 2223
Bst4CI ACNGT 7 cut(s) 394, 700, 735, 885, 1199, 1762, 1815
Bst6I CTCTTC 2 cut(s) 1433, 2264
BstAPI GCANNNNNTGC 2 cut(s) 93, 2030
BstBI TTCGAA 2 cut(s) 360, 2017
BstC8I GCNNGC 3 cut(s) 654, 2069, 2215
BstEII GGTNACC 1 cut(s) 1772
BstENI CCTNNNNNAGG 1 cut(s) 2644
BstF5I GGATG 4 cut(s) 297, 412, 727, 1566
BstFNI CGCG 3 cut(s) 577, 642, 652
BstKTI GATC 8 cut(s) 70, 640, 772, 781, 1159, 1375, 1858, 2607
BstMAI GTCTC 5 cut(s) 530, 900, 1365, 1558, 2487
BstMBI GATC 8 cut(s) 67, 637, 769, 778, 1156, 1372, 1855, 2604
BstMWI GCNNNNNNNGC 3 cut(s) 84, 93, 2030
BstNI CCWGG 3 cut(s) 259, 1931, 2223
BstNSI RCATGY 2 cut(s) 841, 2478
BstPAI GACNNNNGTC 1 cut(s) 588
BstPI GGTNACC 1 cut(s) 1772
BstSCI CCNGG 3 cut(s) 257, 1929, 2221
BstSFI CTRYAG 2 cut(s) 510, 1198
BstUI CGCG 3 cut(s) 577, 642, 652
BstV1I GCAGC 4 cut(s) 91, 1598, 2020, 2286
BstV2I GAAGAC 1 cut(s) 1016
BstX2I RGATCY 3 cut(s) 769, 1156, 1372
BstXI CCANNNNNNTGG 1 cut(s) 2369
BstYI RGATCY 3 cut(s) 769, 1156, 1372
BsuI GTATCC 4 cut(s) 382, 486, 605, 1075
BsuRI GGCC 5 cut(s) 196, 523, 1929, 2151, 2503
BtrI CACGTC 1 cut(s) 127
BtsCI GGATG 4 cut(s) 297, 412, 727, 1566
BtsIMutI CAGTG 2 cut(s) 171, 585
BveI ACCTGC 1 cut(s) 302
Cac8I GCNNGC 3 cut(s) 654, 2069, 2215
CaiI CAGNNNCTG 2 cut(s) 264, 1556
CciI TCATGA 1 cut(s) 2508
Cfr13I GGNCC 1 cut(s) 195
CseI GACGC 1 cut(s) 631
Csp6I GTAC 6 cut(s) 145, 600, 687, 750, 951, 2227
CviQI GTAC 6 cut(s) 145, 600, 687, 750, 951, 2227
DpnI GATC 8 cut(s) 69, 639, 771, 780, 1158, 1374, 1857, 2606
DpnII GATC 8 cut(s) 67, 637, 769, 778, 1156, 1372, 1855, 2604
Eam1104I CTCTTC 2 cut(s) 1433, 2264
EarI CTCTTC 2 cut(s) 1433, 2264
EciI GGCGGA 1 cut(s) 993
Ecl136II GAGCTC 1 cut(s) 433
Eco147I AGGCCT 2 cut(s) 523, 1929
Eco24I GRGCYC 3 cut(s) 435, 1221, 1667
Eco31I GGTCTC 1 cut(s) 900
Eco32I GATATC 1 cut(s) 814
Eco53kI GAGCTC 1 cut(s) 433
Eco91I GGTNACC 1 cut(s) 1772
EcoICRI GAGCTC 1 cut(s) 433
EcoNI CCTNNNNNAGG 1 cut(s) 2644
EcoO65I GGTNACC 1 cut(s) 1772
EcoRI GAATTC 2 cut(s) 1067, 2349
EcoRII CCWGG 3 cut(s) 257, 1929, 2221
EcoRV GATATC 1 cut(s) 814
EcoT22I ATGCAT 1 cut(s) 412
EcoT38I GRGCYC 3 cut(s) 435, 1221, 1667
FalI AAGNNNNNCTT 4 cut(s) 1956, 1988, 1998, 2030
FaqI GGGAC 1 cut(s) 2194
FblI GTMKAC 2 cut(s) 1935, 2320
Fnu4HI GCNGC 7 cut(s) 97, 105, 756, 800, 1587, 2034, 2300
FokI GGATG 4 cut(s) 304, 419, 714, 1553
FriOI GRGCYC 3 cut(s) 435, 1221, 1667
Fsp4HI GCNGC 7 cut(s) 97, 105, 756, 800, 1587, 2034, 2300
FspBI CTAG 6 cut(s) 897, 933, 1020, 1778, 1920, 2303
GluI GCNGC 7 cut(s) 97, 105, 756, 800, 1587, 2034, 2300
GsaI CCCAGC 1 cut(s) 1603
HaeIII GGCC 5 cut(s) 196, 523, 1929, 2151, 2503
HapII CCGG 1 cut(s) 1491
HgaI GACGC 1 cut(s) 631
HincII GTYRAC 2 cut(s) 703, 2321
HindII GTYRAC 2 cut(s) 703, 2321
HindIII AAGCTT 3 cut(s) 969, 1173, 1403
HpaII CCGG 1 cut(s) 1491
HphI GGTGA 3 cut(s) 188, 1072, 1803
Hpy166II GTNNAC 6 cut(s) 130, 478, 689, 703, 1936, 2321
Hpy188I TCNGA 7 cut(s) 154, 739, 1075, 1702, 1757, 1978, 2143
Hpy8I GTNNAC 6 cut(s) 130, 478, 689, 703, 1936, 2321
Hpy99I CGWCG 1 cut(s) 668
HpyAV CCTTC 2 cut(s) 245, 813
HpyCH4III ACNGT 7 cut(s) 394, 700, 735, 885, 1199, 1762, 1815
HpyCH4IV ACGT 3 cut(s) 126, 663, 1497
HpyF10VI GCNNNNNNNGC 3 cut(s) 84, 93, 2030
HpySE526I ACGT 3 cut(s) 126, 663, 1497
Kpn2I TCCGGA 1 cut(s) 1490
KpnI GGTACC 2 cut(s) 954, 2230
Kzo9I GATC 8 cut(s) 67, 637, 769, 778, 1156, 1372, 1855, 2604
LmnI GCTCC 4 cut(s) 54, 374, 430, 867
Lsp1109I GCAGC 4 cut(s) 91, 1598, 2020, 2286
LweI GCATC 6 cut(s) 145, 147, 397, 419, 1794, 2020
MaeI CTAG 6 cut(s) 897, 933, 1020, 1778, 1920, 2303
MaeII ACGT 3 cut(s) 126, 663, 1497
MaeIII GTNAC 6 cut(s) 280, 348, 925, 935, 1633, 1772
MalI GATC 8 cut(s) 69, 639, 771, 780, 1158, 1374, 1857, 2606
MboI GATC 8 cut(s) 67, 637, 769, 778, 1156, 1372, 1855, 2604
MfeI CAATTG 2 cut(s) 1578, 1658
MflI RGATCY 3 cut(s) 769, 1156, 1372
MhlI GDGCHC 3 cut(s) 435, 1221, 1667
MlyI GAGTC 4 cut(s) 1780, 2176, 2200, 2546
MmeI TCCRAC 4 cut(s) 889, 1405, 1879, 2192
Mph1103I ATGCAT 1 cut(s) 412
MroI TCCGGA 1 cut(s) 1490
MroXI GAANNNNTTC 4 cut(s) 1067, 1734, 2013, 2124
MseI TTAA 9 cut(s) 402, 683, 1262, 1334, 1430, 1511, 1608, 2261, 2420
MslI CAYNNNNRTG 2 cut(s) 1640, 2627
MspI CCGG 1 cut(s) 1491
MspR9I CCNGG 3 cut(s) 259, 1931, 2223
MunI CAATTG 2 cut(s) 1578, 1658
MvaI CCWGG 3 cut(s) 259, 1931, 2223
MvnI CGCG 3 cut(s) 577, 642, 652
MwoI GCNNNNNNNGC 3 cut(s) 84, 93, 2030
NdeII GATC 8 cut(s) 67, 637, 769, 778, 1156, 1372, 1855, 2604
NlaIV GGNNCC 5 cut(s) 256, 559, 952, 1759, 2228
NmeAIII GCCGAG 1 cut(s) 789
NmuCI GTSAC 2 cut(s) 280, 1633
NsiI ATGCAT 1 cut(s) 412
NspI RCATGY 2 cut(s) 841, 2478
NspV TTCGAA 2 cut(s) 360, 2017
OliI CACNNNNGTG 1 cut(s) 1640
PagI TCATGA 1 cut(s) 2508
PceI AGGCCT 2 cut(s) 523, 1929
PdmI GAANNNNTTC 4 cut(s) 1067, 1734, 2013, 2124
PkrI GCNGC 7 cut(s) 98, 106, 757, 801, 1588, 2035, 2301
PleI GAGTC 4 cut(s) 1780, 2176, 2199, 2545
PpsI GAGTC 4 cut(s) 1780, 2176, 2199, 2545
PshAI GACNNNNGTC 1 cut(s) 588
PshBI ATTAAT 1 cut(s) 1430
PsiI TTATAA 2 cut(s) 1056, 1131
Psp124BI GAGCTC 1 cut(s) 435
Psp1406I AACGTT 1 cut(s) 1497
Psp6I CCWGG 3 cut(s) 257, 1929, 2221
PspEI GGTNACC 1 cut(s) 1772
PspFI CCCAGC 1 cut(s) 1599
PspGI CCWGG 3 cut(s) 257, 1929, 2221
PspN4I GGNNCC 5 cut(s) 256, 559, 952, 1759, 2228
PspPI GGNCC 1 cut(s) 195
PstNI CAGNNNCTG 2 cut(s) 264, 1556
PsuI RGATCY 3 cut(s) 769, 1156, 1372
RsaI GTAC 6 cut(s) 146, 601, 688, 751, 952, 2228
RsaNI GTAC 6 cut(s) 145, 600, 687, 750, 951, 2227
RseI CAYNNNNRTG 2 cut(s) 1640, 2627
SacI GAGCTC 1 cut(s) 435
SalI GTCGAC 1 cut(s) 2319
SaqAI TTAA 9 cut(s) 402, 683, 1262, 1334, 1430, 1511, 1608, 2261, 2420
SatI GCNGC 7 cut(s) 97, 105, 756, 800, 1587, 2034, 2300
Sau3AI GATC 8 cut(s) 67, 637, 769, 778, 1156, 1372, 1855, 2604
Sau96I GGNCC 1 cut(s) 195
SchI GAGTC 4 cut(s) 1780, 2176, 2200, 2546
ScrFI CCNGG 3 cut(s) 259, 1931, 2223
SduI GDGCHC 3 cut(s) 435, 1221, 1667
SfaNI GCATC 6 cut(s) 145, 147, 397, 419, 1794, 2020
SfcI CTRYAG 2 cut(s) 510, 1198
SfuI TTCGAA 2 cut(s) 360, 2017
SmiMI CAYNNNNRTG 2 cut(s) 1640, 2627
SmlI CTYRAG 4 cut(s) 1170, 1709, 1788, 2381
SmoI CTYRAG 4 cut(s) 1170, 1709, 1788, 2381
SseBI AGGCCT 2 cut(s) 523, 1929
SsiI CCGC 5 cut(s) 96, 577, 756, 800, 978
SspMI CTAG 6 cut(s) 897, 933, 1020, 1778, 1920, 2303
SstI GAGCTC 1 cut(s) 435
StuI AGGCCT 2 cut(s) 523, 1929
StyD4I CCNGG 3 cut(s) 257, 1929, 2221
TaaI ACNGT 7 cut(s) 394, 700, 735, 885, 1199, 1762, 1815
TaiI ACGT 3 cut(s) 129, 666, 1500
TatI WGTACW 2 cut(s) 144, 686
TauI GCSGC 3 cut(s) 99, 758, 802
Tru1I TTAA 9 cut(s) 402, 683, 1262, 1334, 1430, 1511, 1608, 2261, 2420
Tru9I TTAA 9 cut(s) 402, 683, 1262, 1334, 1430, 1511, 1608, 2261, 2420
TscAI CASTG 2 cut(s) 178, 592
TseFI GTSAC 2 cut(s) 280, 1633
TseI GCWGC 4 cut(s) 104, 1586, 2033, 2299
Tsp45I GTSAC 2 cut(s) 280, 1633
TspRI CASTG 2 cut(s) 178, 592
VspI ATTAAT 1 cut(s) 1430
XagI CCTNNNNNAGG 1 cut(s) 2644
XapI RAATTY 9 cut(s) 109, 1067, 1378, 1526, 1560, 1688, 2349, 2428, 2592
XceI RCATGY 2 cut(s) 841, 2478
XcmI CCANNNNNNNNNTGG 1 cut(s) 1657
XmiI GTMKAC 2 cut(s) 1935, 2320
XmnI GAANNNNTTC 4 cut(s) 1067, 1734, 2013, 2124
XspI CTAG 6 cut(s) 897, 933, 1020, 1778, 1920, 2303
Zsp2I ATGCAT 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.