Rroxscaffold_2G00104060

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000083
Physical Location & Seq
Forward (+)
27179726 .. 27180069
344 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00104060.1

Sequence Viewer

Length: 267 bp
ATGGATTTAGATGACAGTTCCACTACTTTGGGTTGGGAAGATAGACTTCGAATAGCAGTAGACGCTGCACAAGGATTGGAGTATCTGCATTATGGTTGTAAGCCACCTATAATTCACAGGGATGTGAAATCAGCAAACATCTTGCTGACTGAAAACTTCCAAGCCCAAGTATCTGATTTTGGCCTATCCAGAAATTTCCCTACAGACCTTGTGACTCATATAACAACTGGCGTTGCTGGTACTCCCGGGTACCTTGACCCTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

88

Amino Acids

9.69

Weight (kDa)

4.61

Isoelectric Point (pI)

37.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 4 - 69 3.4e-13 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 17 - 88 5.7e-14 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000083)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07560 AT1G51790 AT1G51790 AT1G51790 AT1G51800 AT1G51805 AT1G51805 AT1G51810 AT1G51820 AT1G51820 AT1G51830 AT1G51830 AT1G51840 AT1G51840 AT1G51840 AT1G51840 AT1G51840 AT1G51850 AT1G51850 AT1G51860 AT1G51860 AT1G51870 AT1G51870 AT1G51880 AT1G51880 AT1G51880 AT1G51890 AT1G51890 AT1G51890 AT1G51890 AT1G51890 AT1G51910 AT2G04300 AT2G04300 AT2G28960 AT2G28960 AT2G28970 AT2G28970 AT2G28990 AT2G28990 AT2G29000 AT3G21340 AT3G46350 AT5G59616 AT5G59650 AT5G59650 AT5G59660 AT5G59660 AT5G59660 AT5G59670 AT5G59670 AT5G59680
fragaria_vesca FvH4_2g03270 FvH4_3g21300 FvH4_6g32660 FvH4_6g32660 FvH4_6g32670 FvH4_6g32670 FvH4_6g32690 FvH4_6g32690 FvH4_6g32691 FvH4_6g32700 FvH4_6g32740 FvH4_6g32750 FvH4_6g33210 FvH4_6g33210 FvH4_7g24270 FvH4_7g24280 FvH4_7g24291 FvH4_7g24300
malus_domestica MD09G1198400.v1.1 MD09G1198600.v1.1 MD09G1199100.v1.1 MD09G1199200.v1.1 MD09G1199300.v1.1 MD09G1199500.v1.1 MD09G1199600.v1.1 MD17G1179300.v1.1 MD17G1180200.v1.1 MD17G1266000.v1.1
prunus_persica Prupe.1G438900_v2.0.a1 Prupe.1G439000_v2.0.a1 Prupe.1G439100_v2.0.a1 Prupe.3G019400_v2.0.a1 Prupe.3G021900_v2.0.a1 Prupe.3G054500_v2.0.a1 Prupe.3G054500_v2.0.a1 Prupe.3G055100_v2.0.a1 Prupe.3G055400_v2.0.a1 Prupe.3G055500_v2.0.a1 Prupe.3G055600_v2.0.a1 Prupe.3G055700_v2.0.a1 Prupe.3G055800_v2.0.a1 Prupe.3G055900_v2.0.a1 Prupe.3G055900_v2.0.a1 Prupe.3G056000_v2.0.a1 Prupe.3G056000_v2.0.a1 Prupe.3G056100_v2.0.a1 Prupe.3G209600_v2.0.a1 Prupe.3G209700_v2.0.a1 Prupe.6G291100_v2.0.a1 Prupe.7G208900_v2.0.a1 Prupe.8G038300_v2.0.a1
pyrus_communis pycom09g11570 pycom09g11580 pycom09g11610 pycom09g11630 pycom09g11640 pycom17g18840 pycom17g18910 pycom17g18930 pycom17g18940
rosa_chinensis RchiOBHm_Chr1g0317521 RchiOBHm_Chr1g0317541 RchiOBHm_Chr2g0123351 RchiOBHm_Chr2g0141181 RchiOBHm_Chr2g0141191 RchiOBHm_Chr2g0141211 RchiOBHm_Chr2g0141221 RchiOBHm_Chr2g0141261 RchiOBHm_Chr2g0141271 RchiOBHm_Chr2g0141311 RchiOBHm_Chr2g0141331 RchiOBHm_Chr2g0141371 RchiOBHm_Chr2g0141391 RchiOBHm_Chr2g0141401 RchiOBHm_Chr2g0141431 RchiOBHm_Chr2g0141481 RchiOBHm_Chr2g0141491 RchiOBHm_Chr2g0141591 RchiOBHm_Chr2g0141601 RchiOBHm_Chr2g0141611 RchiOBHm_Chr2g0141631 RchiOBHm_Chr2g0141641 RchiOBHm_Chr2g0141661 RchiOBHm_Chr2g0141681 RchiOBHm_Chr2g0141701 RchiOBHm_Chr2g0141781 RchiOBHm_Chr2g0141811 RchiOBHm_Chr2g0141821 RchiOBHm_Chr3g0479311 RchiOBHm_Chr3g0495751 RchiOBHm_Chr4g0404741 RchiOBHm_Chr4g0410341 RchiOBHm_Chr4g0418371 RchiOBHm_Chr4g0438651 RchiOBHm_Chr5g0036411 RchiOBHm_Chr5g0036491 RchiOBHm_Chr5g0042391 RchiOBHm_Chr6g0279871 RchiOBHm_Chr7g0192921 RchiOBHm_Chr7g0214901 RchiOBHm_Chr7g0234931
rosa_laevigata RLG00000003432 RLG00000008806 RLG00000013062 RLG00000019514 RLG00000019923 RLG00000019924 RLG00000019925 RLG00000019930 RLG00000019931 RLG00000019934 RLG00000019937 RLG00000019938 RLG00000033697
rosa_multiflora Rmu_co8002302.1_g000001 Rmu_sc0000147.1_g000031 Rmu_sc0000463.1_g000005 Rmu_sc0000712.1_g000003 Rmu_sc0001483.1_g000017 Rmu_sc0001554.1_g000002 Rmu_sc0001554.1_g000005 Rmu_sc0001554.1_g000008 Rmu_sc0001981.1_g000017 Rmu_sc0002040.1_g000056 Rmu_sc0002755.1_g000018 Rmu_sc0002804.1_g000016 Rmu_sc0002928.1_g000015 Rmu_sc0003040.1_g000008 Rmu_sc0003040.1_g000018 Rmu_sc0004512.1_g000001 Rmu_sc0004512.1_g000004 Rmu_sc0005507.1_g000001 Rmu_sc0005507.1_g000009 Rmu_sc0005507.1_g000033 Rmu_sc0005507.1_g000037 Rmu_sc0005507.1_g000043 Rmu_sc0005507.1_g000047 Rmu_sc0006318.1_g000004 Rmu_sc0006318.1_g000014 Rmu_sc0006318.1_g000021 Rmu_sc0006556.1_g000001 Rmu_sc0007208.1_g000002 Rmu_sc0007208.1_g000003 Rmu_sc0007208.1_g000006 Rmu_sc0007208.1_g000008
rosa_roxburghii Rroxscaffold_1G00044430 Rroxscaffold_2G00103420 Rroxscaffold_2G00103470 Rroxscaffold_2G00103490 Rroxscaffold_2G00103500 Rroxscaffold_2G00103520 Rroxscaffold_2G00103530 Rroxscaffold_2G00103540 Rroxscaffold_2G00103550 Rroxscaffold_2G00103570 Rroxscaffold_2G00103770 Rroxscaffold_2G00103780 Rroxscaffold_2G00103800 Rroxscaffold_2G00103820 Rroxscaffold_2G00103860 Rroxscaffold_2G00103890 Rroxscaffold_2G00103930 Rroxscaffold_2G00103940 Rroxscaffold_2G00104010 Rroxscaffold_2G00104030 Rroxscaffold_2G00104050 Rroxscaffold_2G00104060 Rroxscaffold_2G00104070 Rroxscaffold_2G00104090 Rroxscaffold_2G00104100 Rroxscaffold_2G00104120 Rroxscaffold_2G00104130 Rroxscaffold_4G00331710
rosa_rugosa Rorug02G0367500 Rorug02G0367500 Rorug02G0367600 Rorug02G0367800 Rorug02G0367800 Rorug02G0367900 Rorug02G0368100 Rorug02G0368100 Rorug02G0368100 Rorug02G0368200 Rorug02G0368700 Rorug02G0368900 Rorug05G0155600 Rorug05G0155700 Rorug05G0155800 Rorug05G0156700 Rorug05G0157300
rosa_samantha Rh1AG028000 Rh2AG418700 Rh2AG418900 Rh2AG419000 Rh2AG419100 Rh2AG419400 Rh2AG419600 Rh2AG419800 Rh2AG420400 Rh2AG421000 Rh2BG428500 Rh2BG428600 Rh2BG428800 Rh2BG428900 Rh2BG429300 Rh2BG429400 Rh2BG429700 Rh2BG429900 Rh2BG430000 Rh2BG430700 Rh2CG405100 Rh2CG405200 Rh2CG405300 Rh2CG405500 Rh2CG405600 Rh2CG405700 Rh2CG406000 Rh2CG406100 Rh2CG406300 Rh2CG406600 Rh2CG406700 Rh2CG407500 Rh2CG408100 Rh2DG438500 Rh3DG123900 Rh3DG124000 Rh5BG249700 Rh5BG482500 Rh5CG281500 Rh5CG507300 Rh7DG133300
rosa_wichuraiana Rw0G019720 Rw0G019730 Rw0G019750 Rw0G023010 Rw2G034340 Rw2G034350 Rw2G034370 Rw2G034380 Rw2G034400 Rw2G034430 Rw2G034470 Rw2G034480 Rw2G034510 Rw5G022890 Rw5G026410 Rw5G032710 Rw5G042850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 249
AccB1I GGYRCC 1 cut(s) 249
AccI GTMKAC 1 cut(s) 60
AcsI RAATTY 1 cut(s) 193
AfaI GTAC 2 cut(s) 241, 251
Ama87I CYCGRG 1 cut(s) 245
AoxI GGCC 1 cut(s) 181
ApeKI GCWGC 1 cut(s) 65
ApoI RAATTY 1 cut(s) 193
Asp718I GGTACC 1 cut(s) 249
AsuC2I CCSGG 2 cut(s) 246, 247
AsuII TTCGAA 1 cut(s) 49
AvaI CYCGRG 1 cut(s) 245
BanI GGYRCC 1 cut(s) 249
BbvI GCAGC 1 cut(s) 52
BcnI CCSGG 2 cut(s) 246, 247
BfmI CTRYAG 1 cut(s) 201
BisI GCNGC 1 cut(s) 66
BlsI GCNGC 1 cut(s) 67
Bme1390I CCNGG 2 cut(s) 246, 247
BmeT110I CYCGRG 1 cut(s) 245
BmiI GGNNCC 1 cut(s) 251
BmrFI CCNGG 2 cut(s) 246, 247
Bpu14I TTCGAA 1 cut(s) 49
BpuMI CCSGG 2 cut(s) 246, 247
BsaJI CCNNGG 1 cut(s) 245
Bse1I ACTGG 1 cut(s) 232
BseDI CCNNGG 1 cut(s) 245
BseGI GGATG 1 cut(s) 127
BseMII CTCAG 1 cut(s) 252
BseNI ACTGG 1 cut(s) 232
BseXI GCAGC 1 cut(s) 52
BsgI GTGCAG 1 cut(s) 51
BshFI GGCC 1 cut(s) 183
BshNI GGYRCC 1 cut(s) 249
BsiHKCI CYCGRG 1 cut(s) 245
BsiSI CCGG 1 cut(s) 246
BsnI GGCC 1 cut(s) 183
BsoBI CYCGRG 1 cut(s) 245
Bsp119I TTCGAA 1 cut(s) 49
BspANI GGCC 1 cut(s) 183
BspCNI CTCAG 1 cut(s) 253
BspLI GGNNCC 1 cut(s) 251
BspT104I TTCGAA 1 cut(s) 49
BspT107I GGYRCC 1 cut(s) 249
BsrI ACTGG 1 cut(s) 232
BssECI CCNNGG 1 cut(s) 245
Bst4CI ACNGT 1 cut(s) 17
BstBI TTCGAA 1 cut(s) 49
BstDEI CTNAG 1 cut(s) 261
BstF5I GGATG 1 cut(s) 127
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstSCI CCNGG 2 cut(s) 244, 245
BstSFI CTRYAG 1 cut(s) 201
BstV1I GCAGC 1 cut(s) 52
BstXI CCANNNNNNTGG 1 cut(s) 28
BsuRI GGCC 1 cut(s) 183
BtsCI GGATG 1 cut(s) 127
Cfr9I CCCGGG 1 cut(s) 245
CseI GACGC 1 cut(s) 71
Csp6I GTAC 2 cut(s) 240, 250
CviJI RGCY 3 cut(s) 103, 164, 183
CviKI_1 RGCY 3 cut(s) 103, 164, 183
CviQI GTAC 2 cut(s) 240, 250
DdeI CTNAG 1 cut(s) 261
Eco88I CYCGRG 1 cut(s) 245
FaiI YATR 4 cut(s) 93, 110, 219, 221
FalI AAGNNNNNCTT 2 cut(s) 30, 62
FblI GTMKAC 1 cut(s) 60
Fnu4HI GCNGC 1 cut(s) 66
FokI GGATG 1 cut(s) 134
Fsp4HI GCNGC 1 cut(s) 66
GluI GCNGC 1 cut(s) 66
HaeIII GGCC 1 cut(s) 183
HapII CCGG 1 cut(s) 246
HgaI GACGC 1 cut(s) 71
HinfI GANTC 1 cut(s) 214
HpaII CCGG 1 cut(s) 246
Hpy166II GTNNAC 1 cut(s) 61
Hpy188I TCNGA 1 cut(s) 175
Hpy188III TCNNGA 1 cut(s) 189
Hpy8I GTNNAC 1 cut(s) 61
HpyCH4III ACNGT 1 cut(s) 17
HpyCH4V TGCA 2 cut(s) 68, 88
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
HpyF3I CTNAG 1 cut(s) 261
KpnI GGTACC 1 cut(s) 253
LpnPI CCDG 5 cut(s) 103, 202, 213, 222, 259
Lsp1109I GCAGC 1 cut(s) 52
MaeIII GTNAC 1 cut(s) 211
MboII GAAGA 1 cut(s) 50
MluCI AATT 2 cut(s) 111, 193
MlyI GAGTC 1 cut(s) 208
MslI CAYNNNNRTG 1 cut(s) 120
MspI CCGG 1 cut(s) 246
MspR9I CCNGG 2 cut(s) 246, 247
MwoI GCNNNNNNNGC 1 cut(s) 62
NciI CCSGG 2 cut(s) 246, 247
NlaIV GGNNCC 1 cut(s) 251
NmuCI GTSAC 1 cut(s) 211
NspV TTCGAA 1 cut(s) 49
PkrI GCNGC 1 cut(s) 67
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
PspN4I GGNNCC 1 cut(s) 251
RsaI GTAC 2 cut(s) 241, 251
RsaNI GTAC 2 cut(s) 240, 250
RseI CAYNNNNRTG 1 cut(s) 120
SatI GCNGC 1 cut(s) 66
SchI GAGTC 1 cut(s) 208
ScrFI CCNGG 2 cut(s) 246, 247
SetI ASST 3 cut(s) 109, 210, 255
SfcI CTRYAG 1 cut(s) 201
SfuI TTCGAA 1 cut(s) 49
SmaI CCCGGG 1 cut(s) 247
SmiMI CAYNNNNRTG 1 cut(s) 120
Sse9I AATT 2 cut(s) 111, 193
StyD4I CCNGG 2 cut(s) 244, 245
TaaI ACNGT 1 cut(s) 17
TaqI TCGA 1 cut(s) 49
TasI AATT 2 cut(s) 111, 193
TseFI GTSAC 1 cut(s) 211
TseI GCWGC 1 cut(s) 65
Tsp45I GTSAC 1 cut(s) 211
TspMI CCCGGG 1 cut(s) 245
XapI RAATTY 1 cut(s) 193
XmaI CCCGGG 1 cut(s) 245
XmiI GTMKAC 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.