Rroxscaffold_2G00104090

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000083
Physical Location & Seq
Forward (+)
27200238 .. 27212850
12613 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00104090.1

Sequence Viewer

Length: 1839 bp
ATGTTGCAGAATTTATTCAGTGAAAAGCCGGGTGTGTTATTTCAACCCTCCAGGGACGTTCAGGCAATTCCTCTTTCGACTGATTGCTGGGTTTGCTCTTATGCTCGTAGTTCATGCCCAAGATCAAACAGCATTGACTGTGGGATTCAGGAGAACTCCAGCTATTCTGAGAAGACAACAGAAATTAACTACATTTCAGATGCAACCTTCATAGACACTGGTGAAAGAGAATTGGTATTGCCCGCCAACAGAAACAACTACCAACAGCCGTACTGGTCTCTTAGGAGCTTCCCTCAAGGAACCAGGAACTGCTACAAAATAATTGTTGAAAGTGCCACCAGATATCTGATCAGAGCCAGCTTCTTTTATGGGAATTATGATGGAGAAAACAAATTGCCACAATTTGAACTACATCTTGGACCTAATTTGTGGGACTCGGTGAGTTTGACCGATGCCTCTAATCCCACAACCAAGGAGCTCATACACAATGTCCCAGCTAACACAACATATATACATGTTTGTCTGGTGAACACAGGCTCTGGGGTTCCATTTATATCAATAATTGAACTCAGGCCTTTGCCCAGTACAACATATCAGACAGAAATGGGGTCTTTAGGACTTTATGTGCGGCTTGACACTGGTCAATCACCATCGAATTATACAGGATATAGGTTTCCAGTTGATATTCATGATCGATTTTGGTATAACTATGCCCAAAGTGATTGGACACAAATTAGTACCTTATCCACCACCTTCAACTCTGCACCTGATAATGATTACAACCCACCATCTATTGTACTGCGTACAGCTGCCACTCCGAAACTTGAAAGTGATAACTTGAGTTTCTACTGGCTGCCTACTGATCCAAGTGCAGAATTTTATGTATACATGCACTTTTCAGAAGTTGTAGAGCTCCAAGCCAACCAGTCTAGACAGCTTGATATTACTTGGAATGGAGAGCACTACTATGGGCCATTTGTTCCTAATTTCTTCAACACCACAACGGTTTCCAGTACTAAACCTTTGACTGGAGGAAAATATAATTTTTCAATCTCAAACCCAGATGGGAACTCTGTCCTTCAACCCATCCTCAATGGAATCGAGATCTACCAGCTAAAAGAATTCTTACAAATAGAAACGAAACAAGAAGATGTTGACGCAATCACAAACATTAAGTCAACCTATACCATTGAGAAGAATTGGCAAGGAGATCCATGTTCCCCCAAGAACTACCTATGGGAAGGTCTAAAATGTAGCTATCCTATAAATGAGTCCCCAAGAATCATATCATTGGATCTATCAAACAACAACTTAACAGGACCGATTCCAGATTTTTTGTCTCAGCTGCCAAACTTAACCATCATAAACTTGGAGAACAACAAGCTCACAGGCTCAGTTCCAGTCAGACTTATTGAAAGAAGGAGGAATGGTTTACTATCATTAAGTTTGTGTGGAAATCCAAATCTATCTGGAAATTTTTCTTGCAAAAAGAAGAAGAACGATTTCATTATACCCATAGTAGGATCCGTCGTTGGAATTTTTTGCCTCTTATCTGTAGCAGTAATCTGCTGGTGCTTGAAAAGGAAAAGAGAAGATGGAGCTGCCATATCTGAAAAACCCCACTTTCCTTCACTGGAACTGGAGCAAAAAAACCAACAGTTTACATACTCTGAGATCCTCAAGTTCACTAACAATTTGGAGAGGACTCTTGGAAAAGGTGGATTTGGAACAGTTTACCATGGATATATTGACAAACTTCAAGTAGCTGTCAAGATGCTTTCTCCATCATCAATTCAAGGGTTTCAAGAATTTCATGCAGAGGCATGTTTATCAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_4 LRR_8 Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

612

Amino Acids

69.01

Weight (kDa)

5.54

Isoelectric Point (pI)

49.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 45 - 371 3.6e-108 Malectin-like domain
LRR_4 PF12799 426 - 463 6.8e-06 Leucine Rich repeats (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000083)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07560 AT1G51790 AT1G51790 AT1G51790 AT1G51800 AT1G51805 AT1G51805 AT1G51810 AT1G51820 AT1G51820 AT1G51830 AT1G51830 AT1G51840 AT1G51840 AT1G51840 AT1G51840 AT1G51840 AT1G51850 AT1G51850 AT1G51860 AT1G51860 AT1G51870 AT1G51870 AT1G51880 AT1G51880 AT1G51880 AT1G51890 AT1G51890 AT1G51890 AT1G51890 AT1G51890 AT1G51910 AT2G04300 AT2G04300 AT2G28960 AT2G28960 AT2G28970 AT2G28970 AT2G28990 AT2G28990 AT2G29000 AT3G21340 AT3G46350 AT5G59616 AT5G59650 AT5G59650 AT5G59660 AT5G59660 AT5G59660 AT5G59670 AT5G59670 AT5G59680
fragaria_vesca FvH4_2g03270 FvH4_3g21300 FvH4_6g32660 FvH4_6g32660 FvH4_6g32670 FvH4_6g32670 FvH4_6g32690 FvH4_6g32690 FvH4_6g32691 FvH4_6g32700 FvH4_6g32740 FvH4_6g32750 FvH4_6g33210 FvH4_6g33210 FvH4_7g24270 FvH4_7g24280 FvH4_7g24291 FvH4_7g24300
malus_domestica MD09G1198400.v1.1 MD09G1198600.v1.1 MD09G1199100.v1.1 MD09G1199200.v1.1 MD09G1199300.v1.1 MD09G1199500.v1.1 MD09G1199600.v1.1 MD17G1179300.v1.1 MD17G1180200.v1.1 MD17G1266000.v1.1
prunus_persica Prupe.1G438900_v2.0.a1 Prupe.1G439000_v2.0.a1 Prupe.1G439100_v2.0.a1 Prupe.3G019400_v2.0.a1 Prupe.3G021900_v2.0.a1 Prupe.3G054500_v2.0.a1 Prupe.3G054500_v2.0.a1 Prupe.3G055100_v2.0.a1 Prupe.3G055400_v2.0.a1 Prupe.3G055500_v2.0.a1 Prupe.3G055600_v2.0.a1 Prupe.3G055700_v2.0.a1 Prupe.3G055800_v2.0.a1 Prupe.3G055900_v2.0.a1 Prupe.3G055900_v2.0.a1 Prupe.3G056000_v2.0.a1 Prupe.3G056000_v2.0.a1 Prupe.3G056100_v2.0.a1 Prupe.3G209600_v2.0.a1 Prupe.3G209700_v2.0.a1 Prupe.6G291100_v2.0.a1 Prupe.7G208900_v2.0.a1 Prupe.8G038300_v2.0.a1
pyrus_communis pycom09g11570 pycom09g11580 pycom09g11610 pycom09g11630 pycom09g11640 pycom17g18840 pycom17g18910 pycom17g18930 pycom17g18940
rosa_chinensis RchiOBHm_Chr1g0317521 RchiOBHm_Chr1g0317541 RchiOBHm_Chr2g0123351 RchiOBHm_Chr2g0141181 RchiOBHm_Chr2g0141191 RchiOBHm_Chr2g0141211 RchiOBHm_Chr2g0141221 RchiOBHm_Chr2g0141261 RchiOBHm_Chr2g0141271 RchiOBHm_Chr2g0141311 RchiOBHm_Chr2g0141331 RchiOBHm_Chr2g0141371 RchiOBHm_Chr2g0141391 RchiOBHm_Chr2g0141401 RchiOBHm_Chr2g0141431 RchiOBHm_Chr2g0141481 RchiOBHm_Chr2g0141491 RchiOBHm_Chr2g0141591 RchiOBHm_Chr2g0141601 RchiOBHm_Chr2g0141611 RchiOBHm_Chr2g0141631 RchiOBHm_Chr2g0141641 RchiOBHm_Chr2g0141661 RchiOBHm_Chr2g0141681 RchiOBHm_Chr2g0141701 RchiOBHm_Chr2g0141781 RchiOBHm_Chr2g0141811 RchiOBHm_Chr2g0141821 RchiOBHm_Chr3g0479311 RchiOBHm_Chr3g0495751 RchiOBHm_Chr4g0404741 RchiOBHm_Chr4g0410341 RchiOBHm_Chr4g0418371 RchiOBHm_Chr4g0438651 RchiOBHm_Chr5g0036411 RchiOBHm_Chr5g0036491 RchiOBHm_Chr5g0042391 RchiOBHm_Chr6g0279871 RchiOBHm_Chr7g0192921 RchiOBHm_Chr7g0214901 RchiOBHm_Chr7g0234931
rosa_laevigata RLG00000003432 RLG00000008806 RLG00000013062 RLG00000019514 RLG00000019923 RLG00000019924 RLG00000019925 RLG00000019930 RLG00000019931 RLG00000019934 RLG00000019937 RLG00000019938 RLG00000033697
rosa_multiflora Rmu_co8002302.1_g000001 Rmu_sc0000147.1_g000031 Rmu_sc0000463.1_g000005 Rmu_sc0000712.1_g000003 Rmu_sc0001483.1_g000017 Rmu_sc0001554.1_g000002 Rmu_sc0001554.1_g000005 Rmu_sc0001554.1_g000008 Rmu_sc0001981.1_g000017 Rmu_sc0002040.1_g000056 Rmu_sc0002755.1_g000018 Rmu_sc0002804.1_g000016 Rmu_sc0002928.1_g000015 Rmu_sc0003040.1_g000008 Rmu_sc0003040.1_g000018 Rmu_sc0004512.1_g000001 Rmu_sc0004512.1_g000004 Rmu_sc0005507.1_g000001 Rmu_sc0005507.1_g000009 Rmu_sc0005507.1_g000033 Rmu_sc0005507.1_g000037 Rmu_sc0005507.1_g000043 Rmu_sc0005507.1_g000047 Rmu_sc0006318.1_g000004 Rmu_sc0006318.1_g000014 Rmu_sc0006318.1_g000021 Rmu_sc0006556.1_g000001 Rmu_sc0007208.1_g000002 Rmu_sc0007208.1_g000003 Rmu_sc0007208.1_g000006 Rmu_sc0007208.1_g000008
rosa_roxburghii Rroxscaffold_1G00044430 Rroxscaffold_2G00103420 Rroxscaffold_2G00103470 Rroxscaffold_2G00103490 Rroxscaffold_2G00103500 Rroxscaffold_2G00103520 Rroxscaffold_2G00103530 Rroxscaffold_2G00103540 Rroxscaffold_2G00103550 Rroxscaffold_2G00103570 Rroxscaffold_2G00103770 Rroxscaffold_2G00103780 Rroxscaffold_2G00103800 Rroxscaffold_2G00103820 Rroxscaffold_2G00103860 Rroxscaffold_2G00103890 Rroxscaffold_2G00103930 Rroxscaffold_2G00103940 Rroxscaffold_2G00104010 Rroxscaffold_2G00104030 Rroxscaffold_2G00104050 Rroxscaffold_2G00104060 Rroxscaffold_2G00104070 Rroxscaffold_2G00104090 Rroxscaffold_2G00104100 Rroxscaffold_2G00104120 Rroxscaffold_2G00104130 Rroxscaffold_4G00331710
rosa_rugosa Rorug02G0367500 Rorug02G0367500 Rorug02G0367600 Rorug02G0367800 Rorug02G0367800 Rorug02G0367900 Rorug02G0368100 Rorug02G0368100 Rorug02G0368100 Rorug02G0368200 Rorug02G0368700 Rorug02G0368900 Rorug05G0155600 Rorug05G0155700 Rorug05G0155800 Rorug05G0156700 Rorug05G0157300
rosa_samantha Rh1AG028000 Rh2AG418700 Rh2AG418900 Rh2AG419000 Rh2AG419100 Rh2AG419400 Rh2AG419600 Rh2AG419800 Rh2AG420400 Rh2AG421000 Rh2BG428500 Rh2BG428600 Rh2BG428800 Rh2BG428900 Rh2BG429300 Rh2BG429400 Rh2BG429700 Rh2BG429900 Rh2BG430000 Rh2BG430700 Rh2CG405100 Rh2CG405200 Rh2CG405300 Rh2CG405500 Rh2CG405600 Rh2CG405700 Rh2CG406000 Rh2CG406100 Rh2CG406300 Rh2CG406600 Rh2CG406700 Rh2CG407500 Rh2CG408100 Rh2DG438500 Rh3DG123900 Rh3DG124000 Rh5BG249700 Rh5BG482500 Rh5CG281500 Rh5CG507300 Rh7DG133300
rosa_wichuraiana Rw0G019720 Rw0G019730 Rw0G019750 Rw0G023010 Rw2G034340 Rw2G034350 Rw2G034370 Rw2G034380 Rw2G034400 Rw2G034430 Rw2G034470 Rw2G034480 Rw2G034510 Rw5G022890 Rw5G026410 Rw5G032710 Rw5G042850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 885
AciI CCGC 2 cut(s) 243, 628
AclWI GGATC 6 cut(s) 857, 1205, 1302, 1518, 1531, 1669
AcsI RAATTY 6 cut(s) 10, 875, 1121, 1474, 1536, 1808
AfaI GTAC 6 cut(s) 272, 586, 739, 798, 805, 1015
AfiI CCNNNNNNNGG 2 cut(s) 1028, 1520
AflIII ACRYGT 1 cut(s) 514
AjnI CCWGG 2 cut(s) 50, 302
AjuI GAANNNNNNNTTGG 2 cut(s) 399, 431
Alw21I GWGCWC 3 cut(s) 480, 915, 963
Alw26I GTCTC 2 cut(s) 282, 1344
AlwI GGATC 6 cut(s) 857, 1205, 1302, 1518, 1531, 1669
AlwNI CAGNNNCTG 2 cut(s) 309, 539
AoxI GGCC 2 cut(s) 572, 971
ApeKI GCWGC 4 cut(s) 809, 853, 1345, 1601
ApoI RAATTY 6 cut(s) 10, 875, 1121, 1474, 1536, 1808
ArsI GACNNNNNNTTYG 2 cut(s) 1160, 1192
Asp700I GAANNNNTTC 3 cut(s) 14, 1477, 1502
AspS9I GGNCC 3 cut(s) 419, 971, 1319
AsuC2I CCSGG 1 cut(s) 30
AsuHPI GGTGA 4 cut(s) 233, 451, 538, 639
AvaII GGWCC 2 cut(s) 419, 1319
BamHI GGATCC 1 cut(s) 1523
BanII GRGCYC 2 cut(s) 480, 915
BbsI GAAGAC 1 cut(s) 179
Bbv12I GWGCWC 3 cut(s) 480, 915, 963
BbvI GCAGC 4 cut(s) 796, 840, 1332, 1588
BccI CCATC 8 cut(s) 374, 658, 796, 1058, 1094, 1367, 1589, 1792
BceAI ACGGC 1 cut(s) 253
BciT130I CCWGG 2 cut(s) 52, 304
BclI TGATCA 1 cut(s) 348
BcnI CCSGG 1 cut(s) 30
BcoDI GTCTC 2 cut(s) 282, 1344
BfaI CTAG 1 cut(s) 930
BfmI CTRYAG 1 cut(s) 1554
BglII AGATCT 1 cut(s) 1104
BisI GCNGC 5 cut(s) 629, 810, 854, 1346, 1602
BlsI GCNGC 5 cut(s) 630, 811, 855, 1347, 1603
BmcAI AGTACT 1 cut(s) 1015
Bme1390I CCNGG 3 cut(s) 30, 52, 304
Bme18I GGWCC 2 cut(s) 419, 1319
BmgT120I GGNCC 3 cut(s) 419, 971, 1319
BmiI GGNNCC 3 cut(s) 301, 546, 1525
BmrFI CCNGG 3 cut(s) 30, 52, 304
BmrI ACTGGG 1 cut(s) 576
BmsI GCATC 3 cut(s) 190, 442, 1764
BmuI ACTGGG 1 cut(s) 576
BoxI GACNNNNGTC 1 cut(s) 639
BpiI GAAGAC 1 cut(s) 179
BplI GAGNNNNNCTC 2 cut(s) 277, 309
BpmI CTGGAG 4 cut(s) 34, 142, 1050, 1661
BpuEI CTTGAG 3 cut(s) 279, 859, 1664
BpuMI CCSGG 1 cut(s) 30
Bsa29I ATCGAT 1 cut(s) 694
BsaI GGTCTC 1 cut(s) 282
BsaJI CCNNGG 3 cut(s) 51, 471, 1738
BsaXI ACNNNNNCTCC 2 cut(s) 1414, 1444
Bsc4I CCNNNNNNNGG 2 cut(s) 1028, 1520
BseBI CCWGG 2 cut(s) 52, 304
BseCI ATCGAT 1 cut(s) 694
BseDI CCNNGG 3 cut(s) 51, 471, 1738
BseGI GGATG 1 cut(s) 1086
BseLI CCNNNNNNNGG 2 cut(s) 1028, 1520
BseMII CTCAG 5 cut(s) 159, 583, 1355, 1407, 1662
BseXI GCAGC 4 cut(s) 796, 840, 1332, 1588
BseYI CCCAGC 2 cut(s) 87, 493
BsgI GTGCAG 2 cut(s) 747, 891
BshFI GGCC 2 cut(s) 574, 973
BshVI ATCGAT 1 cut(s) 694
BsiHKAI GWGCWC 3 cut(s) 480, 915, 963
BsiSI CCGG 1 cut(s) 29
BslFI GGGAC 4 cut(s) 68, 446, 476, 1258
BslI CCNNNNNNNGG 2 cut(s) 1028, 1520
BsmAI GTCTC 2 cut(s) 282, 1344
BsmFI GGGAC 4 cut(s) 68, 446, 476, 1258
BsnI GGCC 2 cut(s) 574, 973
Bso31I GGTCTC 1 cut(s) 282
Bsp1286I GDGCHC 3 cut(s) 480, 915, 963
Bsp143I GATC 9 cut(s) 122, 348, 691, 862, 1104, 1210, 1294, 1523, 1674
Bsp19I CCATGG 1 cut(s) 1738
BspACI CCGC 2 cut(s) 243, 628
BspANI GGCC 2 cut(s) 574, 973
BspCNI CTCAG 5 cut(s) 160, 582, 1354, 1406, 1663
BspDI ATCGAT 1 cut(s) 694
BspHI TCATGA 1 cut(s) 688
BspLI GGNNCC 3 cut(s) 301, 546, 1525
BspPI GGATC 6 cut(s) 857, 1205, 1302, 1518, 1531, 1669
BspTNI GGTCTC 1 cut(s) 282
BssECI CCNNGG 3 cut(s) 51, 471, 1738
BssMI GATC 9 cut(s) 122, 348, 691, 862, 1104, 1210, 1294, 1523, 1674
BssNAI GTATAC 1 cut(s) 886
BssT1I CCWWGG 2 cut(s) 471, 1738
Bst1107I GTATAC 1 cut(s) 886
Bst2UI CCWGG 2 cut(s) 52, 304
Bst4CI ACNGT 4 cut(s) 140, 1006, 1659, 1732
BstC8I GCNNGC 2 cut(s) 243, 358
BstDEI CTNAG 6 cut(s) 168, 281, 569, 1341, 1393, 1671
BstDSI CCRYGG 1 cut(s) 1738
BstF5I GGATG 1 cut(s) 1086
BstKTI GATC 9 cut(s) 125, 351, 694, 865, 1107, 1213, 1297, 1526, 1677
BstMAI GTCTC 2 cut(s) 282, 1344
BstMBI GATC 9 cut(s) 122, 348, 691, 862, 1104, 1210, 1294, 1523, 1674
BstMWI GCNNNNNNNGC 1 cut(s) 93
BstNI CCWGG 2 cut(s) 52, 304
BstNSI RCATGY 3 cut(s) 518, 892, 1827
BstPAI GACNNNNGTC 1 cut(s) 639
BstSCI CCNGG 3 cut(s) 28, 50, 302
BstSFI CTRYAG 1 cut(s) 1554
BstV1I GCAGC 4 cut(s) 796, 840, 1332, 1588
BstV2I GAAGAC 1 cut(s) 179
BstX2I RGATCY 5 cut(s) 1104, 1210, 1294, 1523, 1674
BstYI RGATCY 5 cut(s) 1104, 1210, 1294, 1523, 1674
BstZ17I GTATAC 1 cut(s) 886
Bsu15I ATCGAT 1 cut(s) 694
BsuRI GGCC 2 cut(s) 574, 973
BsuTUI ATCGAT 1 cut(s) 694
BtgI CCRYGG 1 cut(s) 1738
BtsCI GGATG 1 cut(s) 1086
BtsIMutI CAGTG 4 cut(s) 25, 216, 636, 1631
Cac8I GCNNGC 2 cut(s) 243, 358
CaiI CAGNNNCTG 2 cut(s) 309, 539
CciI TCATGA 1 cut(s) 688
Cfr13I GGNCC 3 cut(s) 419, 971, 1319
ClaI ATCGAT 1 cut(s) 694
CseI GACGC 1 cut(s) 1166
Csp6I GTAC 6 cut(s) 271, 585, 738, 797, 804, 1014
CviAII CATG 8 cut(s) 114, 515, 689, 889, 1215, 1739, 1814, 1824
CviQI GTAC 6 cut(s) 271, 585, 738, 797, 804, 1014
DdeI CTNAG 6 cut(s) 168, 281, 569, 1341, 1393, 1671
DpnI GATC 9 cut(s) 124, 350, 693, 864, 1106, 1212, 1296, 1525, 1676
DpnII GATC 9 cut(s) 122, 348, 691, 862, 1104, 1210, 1294, 1523, 1674
Ecl136II GAGCTC 2 cut(s) 478, 913
Eco130I CCWWGG 2 cut(s) 471, 1738
Eco147I AGGCCT 1 cut(s) 574
Eco24I GRGCYC 2 cut(s) 480, 915
Eco31I GGTCTC 1 cut(s) 282
Eco32I GATATC 1 cut(s) 344
Eco47I GGWCC 2 cut(s) 419, 1319
Eco53kI GAGCTC 2 cut(s) 478, 913
EcoICRI GAGCTC 2 cut(s) 478, 913
EcoRI GAATTC 1 cut(s) 1121
EcoRII CCWGG 2 cut(s) 50, 302
EcoRV GATATC 1 cut(s) 344
EcoT14I CCWWGG 2 cut(s) 471, 1738
EcoT38I GRGCYC 2 cut(s) 480, 915
ErhI CCWWGG 2 cut(s) 471, 1738
FaeI CATG 8 cut(s) 117, 518, 692, 892, 1218, 1742, 1817, 1827
FaqI GGGAC 4 cut(s) 68, 446, 476, 1258
FatI CATG 8 cut(s) 113, 514, 688, 888, 1214, 1738, 1813, 1823
FauI CCCGC 1 cut(s) 250
FbaI TGATCA 1 cut(s) 348
FblI GTMKAC 1 cut(s) 885
Fnu4HI GCNGC 5 cut(s) 629, 810, 854, 1346, 1602
FokI GGATG 1 cut(s) 1073
FriOI GRGCYC 2 cut(s) 480, 915
Fsp4HI GCNGC 5 cut(s) 629, 810, 854, 1346, 1602
FspBI CTAG 1 cut(s) 930
GluI GCNGC 5 cut(s) 629, 810, 854, 1346, 1602
GsaI CCCAGC 2 cut(s) 91, 497
GsuI CTGGAG 4 cut(s) 34, 142, 1050, 1661
HaeIII GGCC 2 cut(s) 574, 973
HapII CCGG 1 cut(s) 29
HgaI GACGC 1 cut(s) 1166
Hin1II CATG 8 cut(s) 117, 518, 692, 892, 1218, 1742, 1817, 1827
HincII GTYRAC 2 cut(s) 1156, 1179
HindII GTYRAC 2 cut(s) 1156, 1179
HinfI GANTC 7 cut(s) 145, 434, 1098, 1271, 1281, 1324, 1705
HpaII CCGG 1 cut(s) 29
HphI GGTGA 4 cut(s) 233, 451, 538, 639
Hpy166II GTNNAC 8 cut(s) 529, 886, 1156, 1179, 1433, 1662, 1686, 1735
Hpy188III TCNNGA 9 cut(s) 149, 689, 930, 1102, 1328, 1470, 1771, 1805, 1833
Hpy8I GTNNAC 8 cut(s) 529, 886, 1156, 1179, 1433, 1662, 1686, 1735
Hpy99I CGWCG 1 cut(s) 1532
HpyAV CCTTC 6 cut(s) 217, 763, 1088, 1235, 1413, 1638
HpyCH4III ACNGT 4 cut(s) 140, 1006, 1659, 1732
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 7 cut(s) 7, 203, 764, 872, 892, 1485, 1817
HpyF10VI GCNNNNNNNGC 1 cut(s) 93
HpyF3I CTNAG 6 cut(s) 168, 281, 569, 1341, 1393, 1671
HpySE526I ACGT 1 cut(s) 57
Hsp92II CATG 8 cut(s) 117, 518, 692, 892, 1218, 1742, 1817, 1827
Ksp22I TGATCA 1 cut(s) 348
Kzo9I GATC 9 cut(s) 122, 348, 691, 862, 1104, 1210, 1294, 1523, 1674
LmnI GCTCC 5 cut(s) 285, 475, 918, 1598, 1642
Lsp1109I GCAGC 4 cut(s) 796, 840, 1332, 1588
LweI GCATC 3 cut(s) 190, 442, 1764
MaeI CTAG 1 cut(s) 930
MaeII ACGT 1 cut(s) 57
MalI GATC 9 cut(s) 124, 350, 693, 864, 1106, 1212, 1296, 1525, 1676
MboI GATC 9 cut(s) 122, 348, 691, 862, 1104, 1210, 1294, 1523, 1674
MboII GAAGA 7 cut(s) 184, 982, 1160, 1207, 1504, 1507, 1604
MflI RGATCY 5 cut(s) 1104, 1210, 1294, 1523, 1674
MhlI GDGCHC 3 cut(s) 480, 915, 963
MlyI GAGTC 3 cut(s) 428, 1280, 1699
MmeI TCCRAC 1 cut(s) 1513
MroXI GAANNNNTTC 3 cut(s) 14, 1477, 1502
MseI TTAA 5 cut(s) 186, 1173, 1313, 1355, 1442
MslI CAYNNNNRTG 1 cut(s) 966
MspA1I CMGCKG 2 cut(s) 809, 1345
MspI CCGG 1 cut(s) 29
MspR9I CCNGG 3 cut(s) 30, 52, 304
MvaI CCWGG 2 cut(s) 52, 304
MwoI GCNNNNNNNGC 1 cut(s) 93
NciI CCSGG 1 cut(s) 30
NcoI CCATGG 1 cut(s) 1738
NdeII GATC 9 cut(s) 122, 348, 691, 862, 1104, 1210, 1294, 1523, 1674
NlaIII CATG 8 cut(s) 117, 518, 692, 892, 1218, 1742, 1817, 1827
NlaIV GGNNCC 3 cut(s) 301, 546, 1525
NspI RCATGY 3 cut(s) 518, 892, 1827
PagI TCATGA 1 cut(s) 688
PceI AGGCCT 1 cut(s) 574
PciI ACATGT 1 cut(s) 514
PdmI GAANNNNTTC 3 cut(s) 14, 1477, 1502
PfeI GAWTC 4 cut(s) 145, 1098, 1281, 1324
PkrI GCNGC 5 cut(s) 630, 811, 855, 1347, 1603
PleI GAGTC 3 cut(s) 428, 1279, 1699
PpsI GAGTC 3 cut(s) 428, 1279, 1699
PscI ACATGT 1 cut(s) 514
PshAI GACNNNNGTC 1 cut(s) 639
Psp124BI GAGCTC 2 cut(s) 480, 915
Psp6I CCWGG 2 cut(s) 50, 302
PspFI CCCAGC 2 cut(s) 87, 493
PspGI CCWGG 2 cut(s) 50, 302
PspN4I GGNNCC 3 cut(s) 301, 546, 1525
PspPI GGNCC 3 cut(s) 419, 971, 1319
PstNI CAGNNNCTG 2 cut(s) 309, 539
PsuI RGATCY 5 cut(s) 1104, 1210, 1294, 1523, 1674
PvuII CAGCTG 2 cut(s) 809, 1345
RsaI GTAC 6 cut(s) 272, 586, 739, 798, 805, 1015
RsaNI GTAC 6 cut(s) 271, 585, 738, 797, 804, 1014
RseI CAYNNNNRTG 1 cut(s) 966
SacI GAGCTC 2 cut(s) 480, 915
SaqAI TTAA 5 cut(s) 186, 1173, 1313, 1355, 1442
SatI GCNGC 5 cut(s) 629, 810, 854, 1346, 1602
Sau3AI GATC 9 cut(s) 122, 348, 691, 862, 1104, 1210, 1294, 1523, 1674
Sau96I GGNCC 3 cut(s) 419, 971, 1319
ScaI AGTACT 1 cut(s) 1015
SchI GAGTC 3 cut(s) 428, 1280, 1699
ScrFI CCNGG 3 cut(s) 30, 52, 304
SduI GDGCHC 3 cut(s) 480, 915, 963
SfaNI GCATC 3 cut(s) 190, 442, 1764
SfcI CTRYAG 1 cut(s) 1554
SinI GGWCC 2 cut(s) 419, 1319
SmiMI CAYNNNNRTG 1 cut(s) 966
SmlI CTYRAG 3 cut(s) 294, 838, 1679
SmoI CTYRAG 3 cut(s) 294, 838, 1679
SseBI AGGCCT 1 cut(s) 574
SsiI CCGC 2 cut(s) 243, 628
SspMI CTAG 1 cut(s) 930
SstI GAGCTC 2 cut(s) 480, 915
StuI AGGCCT 1 cut(s) 574
StyD4I CCNGG 3 cut(s) 28, 50, 302
StyI CCWWGG 2 cut(s) 471, 1738
TaaI ACNGT 4 cut(s) 140, 1006, 1659, 1732
TaiI ACGT 1 cut(s) 60
TaqI TCGA 4 cut(s) 77, 653, 694, 1101
TaqII GACCGA 2 cut(s) 464, 1336
TatI WGTACW 3 cut(s) 584, 796, 1013
TauI GCSGC 1 cut(s) 631
TfiI GAWTC 4 cut(s) 145, 1098, 1281, 1324
Tru1I TTAA 5 cut(s) 186, 1173, 1313, 1355, 1442
Tru9I TTAA 5 cut(s) 186, 1173, 1313, 1355, 1442
TscAI CASTG 4 cut(s) 25, 223, 643, 1638
TseI GCWGC 4 cut(s) 809, 853, 1345, 1601
TspDTI ATGAA 5 cut(s) 102, 199, 677, 1495, 1802
TspGWI ACGGA 1 cut(s) 1516
TspRI CASTG 4 cut(s) 25, 223, 643, 1638
VpaK11BI GGWCC 2 cut(s) 419, 1319
XapI RAATTY 6 cut(s) 10, 875, 1121, 1474, 1536, 1808
XbaI TCTAGA 1 cut(s) 929
XceI RCATGY 3 cut(s) 518, 892, 1827
XcmI CCANNNNNNNNNTGG 1 cut(s) 1366
XmiI GTMKAC 1 cut(s) 885
XmnI GAANNNNTTC 3 cut(s) 14, 1477, 1502
XspI CTAG 1 cut(s) 930
ZrmI AGTACT 1 cut(s) 1015
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.