Rw5G032710

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000083
Physical Location & Seq
Reverse (-)
55442427 .. 55444307
1881 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G032710.1

Sequence Viewer

Length: 426 bp
ATGTGTTGTATTTTGGGTTCTAAATTTCCGCAGGCAGAGACGGGGTTAAACTATGCTCATCATCGAAACTTGGTATCTCTCATTGGTTACTGCGATGAAGGTGACACTATGACACTTGTTTTTGAGTATGTAGCCAATGGAAATTTGCAGCAACATTTATCAGATCTAACATTGGACTTTTTGACTTGGAAGGAAAGACTTCAAATTGCGGTGGATGCAGCACGAGGGTTGGATTATCTACATAATGGTTGCAAGCCACCTATAGTCCATAGAGATCTGAAGGCTTCCAATATCTTGTTAAATGAAAAGTTGCAAGCCAAGATAGCTGATTTTGGTCTTTCTAAAGTTCTTGCAACTGAAAGCGCCACTCATATATCAACTGATGCCAAAGGAACATCCATAGATTTTCTGATTTTATTTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_4 LRR_8 Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

141

Amino Acids

15.62

Weight (kDa)

5.8

Isoelectric Point (pI)

25.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 16 - 128 3.7e-26 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 18 - 126 8.7e-24 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000083)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07560 AT1G51790 AT1G51790 AT1G51790 AT1G51800 AT1G51805 AT1G51805 AT1G51810 AT1G51820 AT1G51820 AT1G51830 AT1G51830 AT1G51840 AT1G51840 AT1G51840 AT1G51840 AT1G51840 AT1G51850 AT1G51850 AT1G51860 AT1G51860 AT1G51870 AT1G51870 AT1G51880 AT1G51880 AT1G51880 AT1G51890 AT1G51890 AT1G51890 AT1G51890 AT1G51890 AT1G51910 AT2G04300 AT2G04300 AT2G28960 AT2G28960 AT2G28970 AT2G28970 AT2G28990 AT2G28990 AT2G29000 AT3G21340 AT3G46350 AT5G59616 AT5G59650 AT5G59650 AT5G59660 AT5G59660 AT5G59660 AT5G59670 AT5G59670 AT5G59680
fragaria_vesca FvH4_2g03270 FvH4_3g21300 FvH4_6g32660 FvH4_6g32660 FvH4_6g32670 FvH4_6g32670 FvH4_6g32690 FvH4_6g32690 FvH4_6g32691 FvH4_6g32700 FvH4_6g32740 FvH4_6g32750 FvH4_6g33210 FvH4_6g33210 FvH4_7g24270 FvH4_7g24280 FvH4_7g24291 FvH4_7g24300
malus_domestica MD09G1198400.v1.1 MD09G1198600.v1.1 MD09G1199100.v1.1 MD09G1199200.v1.1 MD09G1199300.v1.1 MD09G1199500.v1.1 MD09G1199600.v1.1 MD17G1179300.v1.1 MD17G1180200.v1.1 MD17G1266000.v1.1
prunus_persica Prupe.1G438900_v2.0.a1 Prupe.1G439000_v2.0.a1 Prupe.1G439100_v2.0.a1 Prupe.3G019400_v2.0.a1 Prupe.3G021900_v2.0.a1 Prupe.3G054500_v2.0.a1 Prupe.3G054500_v2.0.a1 Prupe.3G055100_v2.0.a1 Prupe.3G055400_v2.0.a1 Prupe.3G055500_v2.0.a1 Prupe.3G055600_v2.0.a1 Prupe.3G055700_v2.0.a1 Prupe.3G055800_v2.0.a1 Prupe.3G055900_v2.0.a1 Prupe.3G055900_v2.0.a1 Prupe.3G056000_v2.0.a1 Prupe.3G056000_v2.0.a1 Prupe.3G056100_v2.0.a1 Prupe.3G209600_v2.0.a1 Prupe.3G209700_v2.0.a1 Prupe.6G291100_v2.0.a1 Prupe.7G208900_v2.0.a1 Prupe.8G038300_v2.0.a1
pyrus_communis pycom09g11570 pycom09g11580 pycom09g11610 pycom09g11630 pycom09g11640 pycom17g18840 pycom17g18910 pycom17g18930 pycom17g18940
rosa_chinensis RchiOBHm_Chr1g0317521 RchiOBHm_Chr1g0317541 RchiOBHm_Chr2g0123351 RchiOBHm_Chr2g0141181 RchiOBHm_Chr2g0141191 RchiOBHm_Chr2g0141211 RchiOBHm_Chr2g0141221 RchiOBHm_Chr2g0141261 RchiOBHm_Chr2g0141271 RchiOBHm_Chr2g0141311 RchiOBHm_Chr2g0141331 RchiOBHm_Chr2g0141371 RchiOBHm_Chr2g0141391 RchiOBHm_Chr2g0141401 RchiOBHm_Chr2g0141431 RchiOBHm_Chr2g0141481 RchiOBHm_Chr2g0141491 RchiOBHm_Chr2g0141591 RchiOBHm_Chr2g0141601 RchiOBHm_Chr2g0141611 RchiOBHm_Chr2g0141631 RchiOBHm_Chr2g0141641 RchiOBHm_Chr2g0141661 RchiOBHm_Chr2g0141681 RchiOBHm_Chr2g0141701 RchiOBHm_Chr2g0141781 RchiOBHm_Chr2g0141811 RchiOBHm_Chr2g0141821 RchiOBHm_Chr3g0479311 RchiOBHm_Chr3g0495751 RchiOBHm_Chr4g0404741 RchiOBHm_Chr4g0410341 RchiOBHm_Chr4g0418371 RchiOBHm_Chr4g0438651 RchiOBHm_Chr5g0036411 RchiOBHm_Chr5g0036491 RchiOBHm_Chr5g0042391 RchiOBHm_Chr6g0279871 RchiOBHm_Chr7g0192921 RchiOBHm_Chr7g0214901 RchiOBHm_Chr7g0234931
rosa_laevigata RLG00000003432 RLG00000008806 RLG00000013062 RLG00000019514 RLG00000019923 RLG00000019924 RLG00000019925 RLG00000019930 RLG00000019931 RLG00000019934 RLG00000019937 RLG00000019938 RLG00000033697
rosa_multiflora Rmu_co8002302.1_g000001 Rmu_sc0000147.1_g000031 Rmu_sc0000463.1_g000005 Rmu_sc0000712.1_g000003 Rmu_sc0001483.1_g000017 Rmu_sc0001554.1_g000002 Rmu_sc0001554.1_g000005 Rmu_sc0001554.1_g000008 Rmu_sc0001981.1_g000017 Rmu_sc0002040.1_g000056 Rmu_sc0002755.1_g000018 Rmu_sc0002804.1_g000016 Rmu_sc0002928.1_g000015 Rmu_sc0003040.1_g000008 Rmu_sc0003040.1_g000018 Rmu_sc0004512.1_g000001 Rmu_sc0004512.1_g000004 Rmu_sc0005507.1_g000001 Rmu_sc0005507.1_g000009 Rmu_sc0005507.1_g000033 Rmu_sc0005507.1_g000037 Rmu_sc0005507.1_g000043 Rmu_sc0005507.1_g000047 Rmu_sc0006318.1_g000004 Rmu_sc0006318.1_g000014 Rmu_sc0006318.1_g000021 Rmu_sc0006556.1_g000001 Rmu_sc0007208.1_g000002 Rmu_sc0007208.1_g000003 Rmu_sc0007208.1_g000006 Rmu_sc0007208.1_g000008
rosa_roxburghii Rroxscaffold_1G00044430 Rroxscaffold_2G00103420 Rroxscaffold_2G00103470 Rroxscaffold_2G00103490 Rroxscaffold_2G00103500 Rroxscaffold_2G00103520 Rroxscaffold_2G00103530 Rroxscaffold_2G00103540 Rroxscaffold_2G00103550 Rroxscaffold_2G00103570 Rroxscaffold_2G00103770 Rroxscaffold_2G00103780 Rroxscaffold_2G00103800 Rroxscaffold_2G00103820 Rroxscaffold_2G00103860 Rroxscaffold_2G00103890 Rroxscaffold_2G00103930 Rroxscaffold_2G00103940 Rroxscaffold_2G00104010 Rroxscaffold_2G00104030 Rroxscaffold_2G00104050 Rroxscaffold_2G00104060 Rroxscaffold_2G00104070 Rroxscaffold_2G00104090 Rroxscaffold_2G00104100 Rroxscaffold_2G00104120 Rroxscaffold_2G00104130 Rroxscaffold_4G00331710
rosa_rugosa Rorug02G0367500 Rorug02G0367500 Rorug02G0367600 Rorug02G0367800 Rorug02G0367800 Rorug02G0367900 Rorug02G0368100 Rorug02G0368100 Rorug02G0368100 Rorug02G0368200 Rorug02G0368700 Rorug02G0368900 Rorug05G0155600 Rorug05G0155700 Rorug05G0155800 Rorug05G0156700 Rorug05G0157300
rosa_samantha Rh1AG028000 Rh2AG418700 Rh2AG418900 Rh2AG419000 Rh2AG419100 Rh2AG419400 Rh2AG419600 Rh2AG419800 Rh2AG420400 Rh2AG421000 Rh2BG428500 Rh2BG428600 Rh2BG428800 Rh2BG428900 Rh2BG429300 Rh2BG429400 Rh2BG429700 Rh2BG429900 Rh2BG430000 Rh2BG430700 Rh2CG405100 Rh2CG405200 Rh2CG405300 Rh2CG405500 Rh2CG405600 Rh2CG405700 Rh2CG406000 Rh2CG406100 Rh2CG406300 Rh2CG406600 Rh2CG406700 Rh2CG407500 Rh2CG408100 Rh2DG438500 Rh3DG123900 Rh3DG124000 Rh5BG249700 Rh5BG482500 Rh5CG281500 Rh5CG507300 Rh7DG133300
rosa_wichuraiana Rw0G019720 Rw0G019730 Rw0G019750 Rw0G023010 Rw2G034340 Rw2G034350 Rw2G034370 Rw2G034380 Rw2G034400 Rw2G034430 Rw2G034470 Rw2G034480 Rw2G034510 Rw5G022890 Rw5G026410 Rw5G032710 Rw5G042850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 29, 209
AcsI RAATTY 2 cut(s) 23, 142
AcuI CTGAAG 1 cut(s) 299
AgsI TTSAA 1 cut(s) 203
AluBI AGCT 1 cut(s) 326
AluI AGCT 1 cut(s) 326
Alw26I GTCTC 1 cut(s) 32
ApeKI GCWGC 2 cut(s) 148, 218
ApoI RAATTY 2 cut(s) 23, 142
Asp700I GAANNNNTTC 1 cut(s) 198
AspLEI GCGC 1 cut(s) 365
AsuHPI GGTGA 1 cut(s) 113
BauI CACGAG 1 cut(s) 222
BbvI GCAGC 2 cut(s) 160, 230
BcoDI GTCTC 1 cut(s) 32
BfmI CTRYAG 1 cut(s) 261
BfoI RGCGCY 1 cut(s) 366
BglII AGATCT 2 cut(s) 163, 274
BisI GCNGC 2 cut(s) 149, 219
BlsI GCNGC 2 cut(s) 150, 220
BmsI GCATC 2 cut(s) 205, 373
BseGI GGATG 2 cut(s) 220, 395
BseXI GCAGC 2 cut(s) 160, 230
BsmAI GTCTC 1 cut(s) 32
BsmBI CGTCTC 1 cut(s) 32
Bsp143I GATC 2 cut(s) 163, 274
BspACI CCGC 2 cut(s) 29, 209
BssMI GATC 2 cut(s) 163, 274
BssSI CACGAG 1 cut(s) 222
Bst2BI CACGAG 1 cut(s) 222
BstC8I GCNNGC 3 cut(s) 33, 254, 315
BstF5I GGATG 2 cut(s) 220, 395
BstH2I RGCGCY 1 cut(s) 366
BstHHI GCGC 1 cut(s) 365
BstKTI GATC 2 cut(s) 166, 277
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 2 cut(s) 163, 274
BstMWI GCNNNNNNNGC 2 cut(s) 215, 323
BstSFI CTRYAG 1 cut(s) 261
BstV1I GCAGC 2 cut(s) 160, 230
BstX2I RGATCY 2 cut(s) 163, 274
BstYI RGATCY 2 cut(s) 163, 274
BtgZI GCGATG 1 cut(s) 108
BtsCI GGATG 2 cut(s) 220, 395
Cac8I GCNNGC 3 cut(s) 33, 254, 315
CfoI GCGC 1 cut(s) 365
CviJI RGCY 5 cut(s) 134, 256, 284, 317, 326
CviKI_1 RGCY 5 cut(s) 134, 256, 284, 317, 326
DpnI GATC 2 cut(s) 165, 276
DpnII GATC 2 cut(s) 163, 274
Eco57I CTGAAG 1 cut(s) 299
Esp3I CGTCTC 1 cut(s) 32
FaiI YATR 9 cut(s) 54, 110, 129, 243, 263, 270, 372, 374, 401
Fnu4HI GCNGC 2 cut(s) 149, 219
FokI GGATG 2 cut(s) 227, 382
Fsp4HI GCNGC 2 cut(s) 149, 219
GlaI GCGC 1 cut(s) 364
GluI GCNGC 2 cut(s) 149, 219
HaeII RGCGCY 1 cut(s) 366
HhaI GCGC 1 cut(s) 365
Hin6I GCGC 1 cut(s) 363
HinP1I GCGC 1 cut(s) 363
HphI GGTGA 1 cut(s) 113
Hpy188I TCNGA 3 cut(s) 163, 279, 411
HpyAV CCTTC 3 cut(s) 92, 184, 274
HpyCH4V TGCA 5 cut(s) 148, 218, 252, 313, 353
HpyF10VI GCNNNNNNNGC 2 cut(s) 215, 323
HspAI GCGC 1 cut(s) 363
Kzo9I GATC 2 cut(s) 163, 274
LpnPI CCDG 1 cut(s) 17
Lsp1109I GCAGC 2 cut(s) 160, 230
LweI GCATC 2 cut(s) 205, 373
MaeIII GTNAC 2 cut(s) 86, 101
MalI GATC 2 cut(s) 165, 276
MboI GATC 2 cut(s) 163, 274
MflI RGATCY 2 cut(s) 163, 274
MluCI AATT 3 cut(s) 23, 142, 204
MmeI TCCRAC 1 cut(s) 210
MnlI CCTC 1 cut(s) 218
MroXI GAANNNNTTC 1 cut(s) 198
MseI TTAA 2 cut(s) 47, 299
MwoI GCNNNNNNNGC 2 cut(s) 215, 323
NdeII GATC 2 cut(s) 163, 274
NmuCI GTSAC 1 cut(s) 101
PdmI GAANNNNTTC 1 cut(s) 198
PkrI GCNGC 2 cut(s) 150, 220
PsrI GAACNNNNNNTAC 1 cut(s) 33
PsuI RGATCY 2 cut(s) 163, 274
SaqAI TTAA 2 cut(s) 47, 299
SatI GCNGC 2 cut(s) 149, 219
Sau3AI GATC 2 cut(s) 163, 274
SetI ASST 3 cut(s) 103, 262, 328
SfaNI GCATC 2 cut(s) 205, 373
SfcI CTRYAG 1 cut(s) 261
Sse9I AATT 3 cut(s) 23, 142, 204
SsiI CCGC 2 cut(s) 29, 209
TaqI TCGA 1 cut(s) 64
TasI AATT 3 cut(s) 23, 142, 204
Tru1I TTAA 2 cut(s) 47, 299
Tru9I TTAA 2 cut(s) 47, 299
TseFI GTSAC 1 cut(s) 101
TseI GCWGC 2 cut(s) 148, 218
Tsp45I GTSAC 1 cut(s) 101
TspDTI ATGAA 2 cut(s) 111, 318
XapI RAATTY 2 cut(s) 23, 142
XmnI GAANNNNTTC 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.