Rh2CG405500

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Reverse (-)
55200396 .. 55202154
1759 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG405500.1

Sequence Viewer

Length: 672 bp
ATGGCTCTTCAAGGATTGAATGAGCCAACAAATTGGATGTGCATGTATCCAAAGGATATTTATGATCGCTTTTGGGATCCCTATGAGGATGTTGACAATGAGTGGTTAACATTGAATACTTCATCCACAGTCGACTTTGACAAACACAACAGATACCAACCAGCATCAATTGTCATGAGCACAGCTGCCACATCACGAAATGCGAATGTTTCCTTGAATTTATGGTGGGATCCTCCTATTGATGCAAACGATACAGAATATTATGTTTACATGCACTTTGCAGAAATTGAAAAGCTCCAATCAAATGAGTCCAGAATGCAGTACATTACTAACCATGGAGAGCTCTTCCAGGAGTCATTTGCTGCTAGTTACTTGTATACCACAACAATTTACAGCACTAAAGGTTTGAGAGGAGGGCAGAACTTTTCAATCATCAAGGATGACAACTCTACCCTTCCACCCAGTATCAATGGACTTGAGGTCTACACACTGAAAGAATTCCTAGAATTAGAAACAAACCAAGAGGATGTTGAAGCAATCACATACGTCAAGTCAGCTTATGAAATTACAAAGAATTGGCAGGGAGATCCATGTCTCCCACTGAACTACTTGTGGGAAGGCCTAATATGTAGCTATCCTGAAAACGACTCCCCAAGAATCATTTCCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

223

Amino Acids

25.89

Weight (kDa)

4.3

Isoelectric Point (pI)

41.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 13 - 163 1.5e-36 Malectin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000083)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07560 AT1G51790 AT1G51790 AT1G51790 AT1G51800 AT1G51805 AT1G51805 AT1G51810 AT1G51820 AT1G51820 AT1G51830 AT1G51830 AT1G51840 AT1G51840 AT1G51840 AT1G51840 AT1G51840 AT1G51850 AT1G51850 AT1G51860 AT1G51860 AT1G51870 AT1G51870 AT1G51880 AT1G51880 AT1G51880 AT1G51890 AT1G51890 AT1G51890 AT1G51890 AT1G51890 AT1G51910 AT2G04300 AT2G04300 AT2G28960 AT2G28960 AT2G28970 AT2G28970 AT2G28990 AT2G28990 AT2G29000 AT3G21340 AT3G46350 AT5G59616 AT5G59650 AT5G59650 AT5G59660 AT5G59660 AT5G59660 AT5G59670 AT5G59670 AT5G59680
fragaria_vesca FvH4_2g03270 FvH4_3g21300 FvH4_6g32660 FvH4_6g32660 FvH4_6g32670 FvH4_6g32670 FvH4_6g32690 FvH4_6g32690 FvH4_6g32691 FvH4_6g32700 FvH4_6g32740 FvH4_6g32750 FvH4_6g33210 FvH4_6g33210 FvH4_7g24270 FvH4_7g24280 FvH4_7g24291 FvH4_7g24300
malus_domestica MD09G1198400.v1.1 MD09G1198600.v1.1 MD09G1199100.v1.1 MD09G1199200.v1.1 MD09G1199300.v1.1 MD09G1199500.v1.1 MD09G1199600.v1.1 MD17G1179300.v1.1 MD17G1180200.v1.1 MD17G1266000.v1.1
prunus_persica Prupe.1G438900_v2.0.a1 Prupe.1G439000_v2.0.a1 Prupe.1G439100_v2.0.a1 Prupe.3G019400_v2.0.a1 Prupe.3G021900_v2.0.a1 Prupe.3G054500_v2.0.a1 Prupe.3G054500_v2.0.a1 Prupe.3G055100_v2.0.a1 Prupe.3G055400_v2.0.a1 Prupe.3G055500_v2.0.a1 Prupe.3G055600_v2.0.a1 Prupe.3G055700_v2.0.a1 Prupe.3G055800_v2.0.a1 Prupe.3G055900_v2.0.a1 Prupe.3G055900_v2.0.a1 Prupe.3G056000_v2.0.a1 Prupe.3G056000_v2.0.a1 Prupe.3G056100_v2.0.a1 Prupe.3G209600_v2.0.a1 Prupe.3G209700_v2.0.a1 Prupe.6G291100_v2.0.a1 Prupe.7G208900_v2.0.a1 Prupe.8G038300_v2.0.a1
pyrus_communis pycom09g11570 pycom09g11580 pycom09g11610 pycom09g11630 pycom09g11640 pycom17g18840 pycom17g18910 pycom17g18930 pycom17g18940
rosa_chinensis RchiOBHm_Chr1g0317521 RchiOBHm_Chr1g0317541 RchiOBHm_Chr2g0123351 RchiOBHm_Chr2g0141181 RchiOBHm_Chr2g0141191 RchiOBHm_Chr2g0141211 RchiOBHm_Chr2g0141221 RchiOBHm_Chr2g0141261 RchiOBHm_Chr2g0141271 RchiOBHm_Chr2g0141311 RchiOBHm_Chr2g0141331 RchiOBHm_Chr2g0141371 RchiOBHm_Chr2g0141391 RchiOBHm_Chr2g0141401 RchiOBHm_Chr2g0141431 RchiOBHm_Chr2g0141481 RchiOBHm_Chr2g0141491 RchiOBHm_Chr2g0141591 RchiOBHm_Chr2g0141601 RchiOBHm_Chr2g0141611 RchiOBHm_Chr2g0141631 RchiOBHm_Chr2g0141641 RchiOBHm_Chr2g0141661 RchiOBHm_Chr2g0141681 RchiOBHm_Chr2g0141701 RchiOBHm_Chr2g0141781 RchiOBHm_Chr2g0141811 RchiOBHm_Chr2g0141821 RchiOBHm_Chr3g0479311 RchiOBHm_Chr3g0495751 RchiOBHm_Chr4g0404741 RchiOBHm_Chr4g0410341 RchiOBHm_Chr4g0418371 RchiOBHm_Chr4g0438651 RchiOBHm_Chr5g0036411 RchiOBHm_Chr5g0036491 RchiOBHm_Chr5g0042391 RchiOBHm_Chr6g0279871 RchiOBHm_Chr7g0192921 RchiOBHm_Chr7g0214901 RchiOBHm_Chr7g0234931
rosa_laevigata RLG00000003432 RLG00000008806 RLG00000013062 RLG00000019514 RLG00000019923 RLG00000019924 RLG00000019925 RLG00000019930 RLG00000019931 RLG00000019934 RLG00000019937 RLG00000019938 RLG00000033697
rosa_multiflora Rmu_co8002302.1_g000001 Rmu_sc0000147.1_g000031 Rmu_sc0000463.1_g000005 Rmu_sc0000712.1_g000003 Rmu_sc0001483.1_g000017 Rmu_sc0001554.1_g000002 Rmu_sc0001554.1_g000005 Rmu_sc0001554.1_g000008 Rmu_sc0001981.1_g000017 Rmu_sc0002040.1_g000056 Rmu_sc0002755.1_g000018 Rmu_sc0002804.1_g000016 Rmu_sc0002928.1_g000015 Rmu_sc0003040.1_g000008 Rmu_sc0003040.1_g000018 Rmu_sc0004512.1_g000001 Rmu_sc0004512.1_g000004 Rmu_sc0005507.1_g000001 Rmu_sc0005507.1_g000009 Rmu_sc0005507.1_g000033 Rmu_sc0005507.1_g000037 Rmu_sc0005507.1_g000043 Rmu_sc0005507.1_g000047 Rmu_sc0006318.1_g000004 Rmu_sc0006318.1_g000014 Rmu_sc0006318.1_g000021 Rmu_sc0006556.1_g000001 Rmu_sc0007208.1_g000002 Rmu_sc0007208.1_g000003 Rmu_sc0007208.1_g000006 Rmu_sc0007208.1_g000008
rosa_roxburghii Rroxscaffold_1G00044430 Rroxscaffold_2G00103420 Rroxscaffold_2G00103470 Rroxscaffold_2G00103490 Rroxscaffold_2G00103500 Rroxscaffold_2G00103520 Rroxscaffold_2G00103530 Rroxscaffold_2G00103540 Rroxscaffold_2G00103550 Rroxscaffold_2G00103570 Rroxscaffold_2G00103770 Rroxscaffold_2G00103780 Rroxscaffold_2G00103800 Rroxscaffold_2G00103820 Rroxscaffold_2G00103860 Rroxscaffold_2G00103890 Rroxscaffold_2G00103930 Rroxscaffold_2G00103940 Rroxscaffold_2G00104010 Rroxscaffold_2G00104030 Rroxscaffold_2G00104050 Rroxscaffold_2G00104060 Rroxscaffold_2G00104070 Rroxscaffold_2G00104090 Rroxscaffold_2G00104100 Rroxscaffold_2G00104120 Rroxscaffold_2G00104130 Rroxscaffold_4G00331710
rosa_rugosa Rorug02G0367500 Rorug02G0367500 Rorug02G0367600 Rorug02G0367800 Rorug02G0367800 Rorug02G0367900 Rorug02G0368100 Rorug02G0368100 Rorug02G0368100 Rorug02G0368200 Rorug02G0368700 Rorug02G0368900 Rorug05G0155600 Rorug05G0155700 Rorug05G0155800 Rorug05G0156700 Rorug05G0157300
rosa_samantha Rh1AG028000 Rh2AG418700 Rh2AG418900 Rh2AG419000 Rh2AG419100 Rh2AG419400 Rh2AG419600 Rh2AG419800 Rh2AG420400 Rh2AG421000 Rh2BG428500 Rh2BG428600 Rh2BG428800 Rh2BG428900 Rh2BG429300 Rh2BG429400 Rh2BG429700 Rh2BG429900 Rh2BG430000 Rh2BG430700 Rh2CG405100 Rh2CG405200 Rh2CG405300 Rh2CG405500 Rh2CG405600 Rh2CG405700 Rh2CG406000 Rh2CG406100 Rh2CG406300 Rh2CG406600 Rh2CG406700 Rh2CG407500 Rh2CG408100 Rh2DG438500 Rh3DG123900 Rh3DG124000 Rh5BG249700 Rh5BG482500 Rh5CG281500 Rh5CG507300 Rh7DG133300
rosa_wichuraiana Rw0G019720 Rw0G019730 Rw0G019750 Rw0G023010 Rw2G034340 Rw2G034350 Rw2G034370 Rw2G034380 Rw2G034400 Rw2G034430 Rw2G034470 Rw2G034480 Rw2G034510 Rw5G022890 Rw5G026410 Rw5G032710 Rw5G042850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 132, 377, 483
AclWI GGATC 5 cut(s) 71, 84, 224, 237, 581
AcsI RAATTY 2 cut(s) 217, 497
AfaI GTAC 1 cut(s) 323
AgsI TTSAA 7 cut(s) 11, 19, 115, 217, 290, 429, 533
AhdI GACNNNNNGTC 1 cut(s) 479
AjnI CCWGG 1 cut(s) 348
AjuI GAANNNNNNNTTGG 1 cut(s) 646
AluBI AGCT 5 cut(s) 185, 295, 343, 557, 633
AluI AGCT 5 cut(s) 185, 295, 343, 557, 633
Alw21I GWGCWC 2 cut(s) 182, 345
Alw26I GTCTC 1 cut(s) 599
AlwI GGATC 5 cut(s) 71, 84, 224, 237, 581
AoxI GGCC 1 cut(s) 619
ApeKI GCWGC 2 cut(s) 185, 362
ApoI RAATTY 2 cut(s) 217, 497
Asp700I GAANNNNTTC 2 cut(s) 497, 661
BamHI GGATCC 2 cut(s) 76, 229
BanII GRGCYC 1 cut(s) 345
Bbv12I GWGCWC 2 cut(s) 182, 345
BbvI GCAGC 2 cut(s) 172, 349
BciT130I CCWGG 1 cut(s) 350
BciVI GTATCC 1 cut(s) 57
BcoDI GTCTC 1 cut(s) 599
BfaI CTAG 2 cut(s) 366, 503
BfuI GTATCC 1 cut(s) 57
BisI GCNGC 2 cut(s) 186, 363
BlsI GCNGC 2 cut(s) 187, 364
Bme1390I CCNGG 1 cut(s) 350
BmeRI GACNNNNNGTC 1 cut(s) 479
BmiI GGNNCC 2 cut(s) 78, 231
BmrFI CCNGG 1 cut(s) 350
BmrI ACTGGG 1 cut(s) 456
BmsI GCATC 2 cut(s) 173, 232
BmuI ACTGGG 1 cut(s) 456
BpuEI CTTGAG 1 cut(s) 497
BsaJI CCNNGG 1 cut(s) 334
Bse1I ACTGG 1 cut(s) 462
BseBI CCWGG 1 cut(s) 350
BseDI CCNNGG 1 cut(s) 334
BseGI GGATG 5 cut(s) 42, 94, 122, 445, 532
BseNI ACTGG 1 cut(s) 462
BseRI GAGGAG 1 cut(s) 426
BseXI GCAGC 2 cut(s) 172, 349
BshFI GGCC 1 cut(s) 621
BsiHKAI GWGCWC 2 cut(s) 182, 345
BsmAI GTCTC 1 cut(s) 599
BsmI GAATGC 1 cut(s) 321
BsnI GGCC 1 cut(s) 621
Bsp1286I GDGCHC 2 cut(s) 182, 345
Bsp143I GATC 4 cut(s) 64, 76, 229, 586
Bsp19I CCATGG 1 cut(s) 334
BspANI GGCC 1 cut(s) 621
BspHI TCATGA 1 cut(s) 174
BspLI GGNNCC 2 cut(s) 78, 231
BspPI GGATC 5 cut(s) 71, 84, 224, 237, 581
BspQI GCTCTTC 2 cut(s) 12, 350
BsrI ACTGG 1 cut(s) 462
BssECI CCNNGG 1 cut(s) 334
BssMI GATC 4 cut(s) 64, 76, 229, 586
BssNAI GTATAC 1 cut(s) 378
BssT1I CCWWGG 1 cut(s) 334
Bst1107I GTATAC 1 cut(s) 378
Bst2UI CCWGG 1 cut(s) 350
Bst4CI ACNGT 1 cut(s) 130
Bst6I CTCTTC 2 cut(s) 12, 350
BstDSI CCRYGG 1 cut(s) 334
BstF5I GGATG 5 cut(s) 42, 94, 122, 445, 532
BstKTI GATC 4 cut(s) 67, 79, 232, 589
BstMAI GTCTC 1 cut(s) 599
BstMBI GATC 4 cut(s) 64, 76, 229, 586
BstNI CCWGG 1 cut(s) 350
BstNSI RCATGY 2 cut(s) 46, 274
BstSCI CCNGG 1 cut(s) 348
BstV1I GCAGC 2 cut(s) 172, 349
BstX2I RGATCY 3 cut(s) 76, 229, 586
BstXI CCANNNNNNTGG 1 cut(s) 33
BstYI RGATCY 3 cut(s) 76, 229, 586
BstZ17I GTATAC 1 cut(s) 378
BsuI GTATCC 1 cut(s) 57
BsuRI GGCC 1 cut(s) 621
BtgI CCRYGG 1 cut(s) 334
BtsCI GGATG 5 cut(s) 42, 94, 122, 445, 532
BtsIMutI CAGTG 2 cut(s) 488, 599
CciI TCATGA 1 cut(s) 174
Csp6I GTAC 1 cut(s) 322
CviAII CATG 5 cut(s) 43, 175, 271, 335, 591
CviJI RGCY 8 cut(s) 5, 25, 185, 295, 343, 557, 621, 633
CviKI_1 RGCY 8 cut(s) 5, 25, 185, 295, 343, 557, 621, 633
CviQI GTAC 1 cut(s) 322
DpnI GATC 4 cut(s) 66, 78, 231, 588
DpnII GATC 4 cut(s) 64, 76, 229, 586
DriI GACNNNNNGTC 1 cut(s) 479
Eam1104I CTCTTC 2 cut(s) 12, 350
Eam1105I GACNNNNNGTC 1 cut(s) 479
EarI CTCTTC 2 cut(s) 12, 350
Ecl136II GAGCTC 1 cut(s) 343
Eco130I CCWWGG 1 cut(s) 334
Eco147I AGGCCT 1 cut(s) 621
Eco24I GRGCYC 1 cut(s) 345
Eco53kI GAGCTC 1 cut(s) 343
EcoICRI GAGCTC 1 cut(s) 343
EcoRI GAATTC 1 cut(s) 497
EcoRII CCWGG 1 cut(s) 348
EcoT14I CCWWGG 1 cut(s) 334
EcoT38I GRGCYC 1 cut(s) 345
ErhI CCWWGG 1 cut(s) 334
FaeI CATG 5 cut(s) 46, 178, 274, 338, 594
FatI CATG 5 cut(s) 42, 174, 270, 334, 590
FblI GTMKAC 3 cut(s) 132, 377, 483
Fnu4HI GCNGC 2 cut(s) 186, 363
FokI GGATG 5 cut(s) 49, 101, 109, 452, 539
FriOI GRGCYC 1 cut(s) 345
Fsp4HI GCNGC 2 cut(s) 186, 363
FspBI CTAG 2 cut(s) 366, 503
GluI GCNGC 2 cut(s) 186, 363
HaeIII GGCC 1 cut(s) 621
Hin1II CATG 5 cut(s) 46, 178, 274, 338, 594
HincII GTYRAC 3 cut(s) 94, 108, 133
HindII GTYRAC 3 cut(s) 94, 108, 133
HinfI GANTC 4 cut(s) 308, 353, 647, 657
HpaI GTTAAC 1 cut(s) 108
Hpy166II GTNNAC 6 cut(s) 94, 108, 133, 268, 378, 484
Hpy188III TCNNGA 4 cut(s) 175, 195, 312, 638
Hpy8I GTNNAC 6 cut(s) 94, 108, 133, 268, 378, 484
HpyAV CCTTC 2 cut(s) 464, 611
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4IV ACGT 1 cut(s) 546
HpyCH4V TGCA 5 cut(s) 42, 245, 274, 281, 319
HpySE526I ACGT 1 cut(s) 546
Hsp92II CATG 5 cut(s) 46, 178, 274, 338, 594
KspAI GTTAAC 1 cut(s) 108
Kzo9I GATC 4 cut(s) 64, 76, 229, 586
LguI GCTCTTC 2 cut(s) 12, 350
LmnI GCTCC 1 cut(s) 300
LpnPI CCDG 7 cut(s) 174, 325, 335, 362, 475, 566, 651
Lsp1109I GCAGC 2 cut(s) 172, 349
LweI GCATC 2 cut(s) 173, 232
MaeI CTAG 2 cut(s) 366, 503
MaeII ACGT 1 cut(s) 546
MaeIII GTNAC 1 cut(s) 368
MalI GATC 4 cut(s) 66, 78, 231, 588
MboI GATC 4 cut(s) 64, 76, 229, 586
MboII GAAGA 1 cut(s) 337
MfeI CAATTG 1 cut(s) 168
MflI RGATCY 3 cut(s) 76, 229, 586
MhlI GDGCHC 2 cut(s) 182, 345
MluCI AATT 9 cut(s) 31, 168, 217, 285, 387, 497, 506, 564, 574
MlyI GAGTC 3 cut(s) 317, 362, 641
MnlI CCTC 6 cut(s) 79, 243, 404, 407, 472, 517
MroXI GAANNNNTTC 2 cut(s) 497, 661
MseI TTAA 1 cut(s) 107
MspA1I CMGCKG 1 cut(s) 185
MspR9I CCNGG 1 cut(s) 350
MunI CAATTG 1 cut(s) 168
Mva1269I GAATGC 1 cut(s) 321
MvaI CCWGG 1 cut(s) 350
NcoI CCATGG 1 cut(s) 334
NdeII GATC 4 cut(s) 64, 76, 229, 586
NlaIII CATG 5 cut(s) 46, 178, 274, 338, 594
NlaIV GGNNCC 2 cut(s) 78, 231
NspI RCATGY 2 cut(s) 46, 274
PagI TCATGA 1 cut(s) 174
PceI AGGCCT 1 cut(s) 621
PciSI GCTCTTC 2 cut(s) 12, 350
PctI GAATGC 1 cut(s) 321
PdmI GAANNNNTTC 2 cut(s) 497, 661
PfeI GAWTC 1 cut(s) 657
PfoI TCCNGGA 1 cut(s) 348
PkrI GCNGC 2 cut(s) 187, 364
PleI GAGTC 3 cut(s) 316, 361, 641
PpsI GAGTC 3 cut(s) 316, 361, 641
Psp124BI GAGCTC 1 cut(s) 345
Psp6I CCWGG 1 cut(s) 348
PspGI CCWGG 1 cut(s) 348
PspN4I GGNNCC 2 cut(s) 78, 231
PsuI RGATCY 3 cut(s) 76, 229, 586
PvuII CAGCTG 1 cut(s) 185
RsaI GTAC 1 cut(s) 323
RsaNI GTAC 1 cut(s) 322
SacI GAGCTC 1 cut(s) 345
SalI GTCGAC 1 cut(s) 131
SapI GCTCTTC 2 cut(s) 12, 350
SaqAI TTAA 1 cut(s) 107
SatI GCNGC 2 cut(s) 186, 363
Sau3AI GATC 4 cut(s) 64, 76, 229, 586
SchI GAGTC 3 cut(s) 317, 362, 641
ScrFI CCNGG 1 cut(s) 350
SduI GDGCHC 2 cut(s) 182, 345
SetI ASST 8 cut(s) 187, 297, 345, 406, 483, 549, 559, 635
SfaNI GCATC 2 cut(s) 173, 232
SmlI CTYRAG 1 cut(s) 476
SmoI CTYRAG 1 cut(s) 476
Sse9I AATT 9 cut(s) 31, 168, 217, 285, 387, 497, 506, 564, 574
SseBI AGGCCT 1 cut(s) 621
SspI AATATT 1 cut(s) 260
SspMI CTAG 2 cut(s) 366, 503
SstI GAGCTC 1 cut(s) 345
StuI AGGCCT 1 cut(s) 621
StyD4I CCNGG 1 cut(s) 348
StyI CCWWGG 1 cut(s) 334
TaaI ACNGT 1 cut(s) 130
TaiI ACGT 1 cut(s) 549
TaqI TCGA 1 cut(s) 132
TasI AATT 9 cut(s) 31, 168, 217, 285, 387, 497, 506, 564, 574
TatI WGTACW 1 cut(s) 321
TfiI GAWTC 1 cut(s) 657
Tru1I TTAA 1 cut(s) 107
Tru9I TTAA 1 cut(s) 107
TscAI CASTG 2 cut(s) 495, 606
TseI GCWGC 2 cut(s) 185, 362
TspDTI ATGAA 2 cut(s) 111, 576
TspRI CASTG 2 cut(s) 495, 606
XapI RAATTY 2 cut(s) 217, 497
XceI RCATGY 2 cut(s) 46, 274
XmiI GTMKAC 3 cut(s) 132, 377, 483
XmnI GAANNNNTTC 2 cut(s) 497, 661
XspI CTAG 2 cut(s) 366, 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.