Rw0G019720

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00889
Physical Location & Seq
Forward (+)
22378 .. 23648
1271 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G019720.1

Sequence Viewer

Length: 840 bp
ATGCTTTCGCCATCATCAGTTCAAGGGTTTCAACAATTTCATGCTGAGGTAAATCTTCTTATTAGAGTTCATCATAAAAACTTGACAAGCCTTGTTGGATATTGCAATGAAGAGACAAACTTAGGGCTTGTCTATGAATACATGGCTAATGGAAACTTACAAGAACATTTATCAGATAGCAGTTCACATATCATAAGCTGGGAAGGTAGACTTCGAATAGCATCAGATGCCGCACAAGGATTGGAGTACTTGCACTATGGTATTAAGCCGCCAATAATCCATAGGGATGTGAAATCAGCAAATATTTTGTTGAATGAAAATTTCCAAGCCAAGGTATCAGACTTTGGCCTATCCAAAAATTTCCCTACAGATATTGGGACTCATATATCGACAGTTGTTGCAGGAACTCCTGGATATCTTGACCCTGAGTATTACCTATCAAACAGGTTAACTGAGAAAAGCGATGTTTATAGCTTCGGGATTGTGCTGTTGGAGATTATCACAGGTCGACCTGTTTTATCGAAAACGGATGAGAGAATTCACATTAGCCAATGGGTTGGTTTCATGCTTGAAACAGGAAACATTTACAGTATTGTCGATTCAAAGTTGGAGGGAAACTTCACTGTCAACTCTGTGTGGAAAGCTGTGGAGATAGCAATGGCATGTGTGTCCCCAAGTGCCATAAAAAGGCCAATTATGAGTCAAGTAGTTATAGAACTAAAGGAGTGTTTGGCGACACAAATGGGTGAAACAAAGCATAACAATGAAACTGAATTAACAGGTTCCGCTGGCCGGATGTCTAACGATTCCATTGCTATGCTAAGTCCCTCAGTAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

279

Amino Acids

30.92

Weight (kDa)

5.68

Isoelectric Point (pI)

45.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 9 - 185 9e-37 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 11 - 235 1.4e-36 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000083)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07560 AT1G51790 AT1G51790 AT1G51790 AT1G51800 AT1G51805 AT1G51805 AT1G51810 AT1G51820 AT1G51820 AT1G51830 AT1G51830 AT1G51840 AT1G51840 AT1G51840 AT1G51840 AT1G51840 AT1G51850 AT1G51850 AT1G51860 AT1G51860 AT1G51870 AT1G51870 AT1G51880 AT1G51880 AT1G51880 AT1G51890 AT1G51890 AT1G51890 AT1G51890 AT1G51890 AT1G51910 AT2G04300 AT2G04300 AT2G28960 AT2G28960 AT2G28970 AT2G28970 AT2G28990 AT2G28990 AT2G29000 AT3G21340 AT3G46350 AT5G59616 AT5G59650 AT5G59650 AT5G59660 AT5G59660 AT5G59660 AT5G59670 AT5G59670 AT5G59680
fragaria_vesca FvH4_2g03270 FvH4_3g21300 FvH4_6g32660 FvH4_6g32660 FvH4_6g32670 FvH4_6g32670 FvH4_6g32690 FvH4_6g32690 FvH4_6g32691 FvH4_6g32700 FvH4_6g32740 FvH4_6g32750 FvH4_6g33210 FvH4_6g33210 FvH4_7g24270 FvH4_7g24280 FvH4_7g24291 FvH4_7g24300
malus_domestica MD09G1198400.v1.1 MD09G1198600.v1.1 MD09G1199100.v1.1 MD09G1199200.v1.1 MD09G1199300.v1.1 MD09G1199500.v1.1 MD09G1199600.v1.1 MD17G1179300.v1.1 MD17G1180200.v1.1 MD17G1266000.v1.1
prunus_persica Prupe.1G438900_v2.0.a1 Prupe.1G439000_v2.0.a1 Prupe.1G439100_v2.0.a1 Prupe.3G019400_v2.0.a1 Prupe.3G021900_v2.0.a1 Prupe.3G054500_v2.0.a1 Prupe.3G054500_v2.0.a1 Prupe.3G055100_v2.0.a1 Prupe.3G055400_v2.0.a1 Prupe.3G055500_v2.0.a1 Prupe.3G055600_v2.0.a1 Prupe.3G055700_v2.0.a1 Prupe.3G055800_v2.0.a1 Prupe.3G055900_v2.0.a1 Prupe.3G055900_v2.0.a1 Prupe.3G056000_v2.0.a1 Prupe.3G056000_v2.0.a1 Prupe.3G056100_v2.0.a1 Prupe.3G209600_v2.0.a1 Prupe.3G209700_v2.0.a1 Prupe.6G291100_v2.0.a1 Prupe.7G208900_v2.0.a1 Prupe.8G038300_v2.0.a1
pyrus_communis pycom09g11570 pycom09g11580 pycom09g11610 pycom09g11630 pycom09g11640 pycom17g18840 pycom17g18910 pycom17g18930 pycom17g18940
rosa_chinensis RchiOBHm_Chr1g0317521 RchiOBHm_Chr1g0317541 RchiOBHm_Chr2g0123351 RchiOBHm_Chr2g0141181 RchiOBHm_Chr2g0141191 RchiOBHm_Chr2g0141211 RchiOBHm_Chr2g0141221 RchiOBHm_Chr2g0141261 RchiOBHm_Chr2g0141271 RchiOBHm_Chr2g0141311 RchiOBHm_Chr2g0141331 RchiOBHm_Chr2g0141371 RchiOBHm_Chr2g0141391 RchiOBHm_Chr2g0141401 RchiOBHm_Chr2g0141431 RchiOBHm_Chr2g0141481 RchiOBHm_Chr2g0141491 RchiOBHm_Chr2g0141591 RchiOBHm_Chr2g0141601 RchiOBHm_Chr2g0141611 RchiOBHm_Chr2g0141631 RchiOBHm_Chr2g0141641 RchiOBHm_Chr2g0141661 RchiOBHm_Chr2g0141681 RchiOBHm_Chr2g0141701 RchiOBHm_Chr2g0141781 RchiOBHm_Chr2g0141811 RchiOBHm_Chr2g0141821 RchiOBHm_Chr3g0479311 RchiOBHm_Chr3g0495751 RchiOBHm_Chr4g0404741 RchiOBHm_Chr4g0410341 RchiOBHm_Chr4g0418371 RchiOBHm_Chr4g0438651 RchiOBHm_Chr5g0036411 RchiOBHm_Chr5g0036491 RchiOBHm_Chr5g0042391 RchiOBHm_Chr6g0279871 RchiOBHm_Chr7g0192921 RchiOBHm_Chr7g0214901 RchiOBHm_Chr7g0234931
rosa_laevigata RLG00000003432 RLG00000008806 RLG00000013062 RLG00000019514 RLG00000019923 RLG00000019924 RLG00000019925 RLG00000019930 RLG00000019931 RLG00000019934 RLG00000019937 RLG00000019938 RLG00000033697
rosa_multiflora Rmu_co8002302.1_g000001 Rmu_sc0000147.1_g000031 Rmu_sc0000463.1_g000005 Rmu_sc0000712.1_g000003 Rmu_sc0001483.1_g000017 Rmu_sc0001554.1_g000002 Rmu_sc0001554.1_g000005 Rmu_sc0001554.1_g000008 Rmu_sc0001981.1_g000017 Rmu_sc0002040.1_g000056 Rmu_sc0002755.1_g000018 Rmu_sc0002804.1_g000016 Rmu_sc0002928.1_g000015 Rmu_sc0003040.1_g000008 Rmu_sc0003040.1_g000018 Rmu_sc0004512.1_g000001 Rmu_sc0004512.1_g000004 Rmu_sc0005507.1_g000001 Rmu_sc0005507.1_g000009 Rmu_sc0005507.1_g000033 Rmu_sc0005507.1_g000037 Rmu_sc0005507.1_g000043 Rmu_sc0005507.1_g000047 Rmu_sc0006318.1_g000004 Rmu_sc0006318.1_g000014 Rmu_sc0006318.1_g000021 Rmu_sc0006556.1_g000001 Rmu_sc0007208.1_g000002 Rmu_sc0007208.1_g000003 Rmu_sc0007208.1_g000006 Rmu_sc0007208.1_g000008
rosa_roxburghii Rroxscaffold_1G00044430 Rroxscaffold_2G00103420 Rroxscaffold_2G00103470 Rroxscaffold_2G00103490 Rroxscaffold_2G00103500 Rroxscaffold_2G00103520 Rroxscaffold_2G00103530 Rroxscaffold_2G00103540 Rroxscaffold_2G00103550 Rroxscaffold_2G00103570 Rroxscaffold_2G00103770 Rroxscaffold_2G00103780 Rroxscaffold_2G00103800 Rroxscaffold_2G00103820 Rroxscaffold_2G00103860 Rroxscaffold_2G00103890 Rroxscaffold_2G00103930 Rroxscaffold_2G00103940 Rroxscaffold_2G00104010 Rroxscaffold_2G00104030 Rroxscaffold_2G00104050 Rroxscaffold_2G00104060 Rroxscaffold_2G00104070 Rroxscaffold_2G00104090 Rroxscaffold_2G00104100 Rroxscaffold_2G00104120 Rroxscaffold_2G00104130 Rroxscaffold_4G00331710
rosa_rugosa Rorug02G0367500 Rorug02G0367500 Rorug02G0367600 Rorug02G0367800 Rorug02G0367800 Rorug02G0367900 Rorug02G0368100 Rorug02G0368100 Rorug02G0368100 Rorug02G0368200 Rorug02G0368700 Rorug02G0368900 Rorug05G0155600 Rorug05G0155700 Rorug05G0155800 Rorug05G0156700 Rorug05G0157300
rosa_samantha Rh1AG028000 Rh2AG418700 Rh2AG418900 Rh2AG419000 Rh2AG419100 Rh2AG419400 Rh2AG419600 Rh2AG419800 Rh2AG420400 Rh2AG421000 Rh2BG428500 Rh2BG428600 Rh2BG428800 Rh2BG428900 Rh2BG429300 Rh2BG429400 Rh2BG429700 Rh2BG429900 Rh2BG430000 Rh2BG430700 Rh2CG405100 Rh2CG405200 Rh2CG405300 Rh2CG405500 Rh2CG405600 Rh2CG405700 Rh2CG406000 Rh2CG406100 Rh2CG406300 Rh2CG406600 Rh2CG406700 Rh2CG407500 Rh2CG408100 Rh2DG438500 Rh3DG123900 Rh3DG124000 Rh5BG249700 Rh5BG482500 Rh5CG281500 Rh5CG507300 Rh7DG133300
rosa_wichuraiana Rw0G019720 Rw0G019730 Rw0G019750 Rw0G023010 Rw2G034340 Rw2G034350 Rw2G034370 Rw2G034380 Rw2G034400 Rw2G034430 Rw2G034470 Rw2G034480 Rw2G034510 Rw5G022890 Rw5G026410 Rw5G032710 Rw5G042850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 208, 508
AciI CCGC 3 cut(s) 231, 269, 786
AcoI YGGCCR 1 cut(s) 790
AcsI RAATTY 3 cut(s) 319, 358, 537
AfaI GTAC 1 cut(s) 248
AfiI CCNNNNNNNGG 4 cut(s) 331, 687, 792, 834
AgsI TTSAA 5 cut(s) 23, 32, 313, 572, 603
AjnI CCWGG 1 cut(s) 409
AluBI AGCT 3 cut(s) 198, 474, 644
AluI AGCT 3 cut(s) 198, 474, 644
Alw26I GTCTC 1 cut(s) 107
AoxI GGCC 3 cut(s) 346, 689, 790
ApoI RAATTY 3 cut(s) 319, 358, 537
AsuHPI GGTGA 1 cut(s) 758
AsuII TTCGAA 1 cut(s) 214
BbvCI CCTCAGC 1 cut(s) 45
BccI CCATC 1 cut(s) 19
BcgI CGANNNNNNTGC 2 cut(s) 794, 828
BciT130I CCWGG 1 cut(s) 411
BcoDI GTCTC 1 cut(s) 107
BfmI CTRYAG 1 cut(s) 366
BisI GCNGC 2 cut(s) 231, 269
BlsI GCNGC 2 cut(s) 232, 270
BmcAI AGTACT 1 cut(s) 248
Bme1390I CCNGG 1 cut(s) 411
BmiI GGNNCC 1 cut(s) 784
BmrFI CCNGG 1 cut(s) 411
BmsI GCATC 2 cut(s) 217, 230
Bpu10I CCTNAGC 1 cut(s) 45
Bpu14I TTCGAA 1 cut(s) 214
BsaJI CCNNGG 1 cut(s) 330
Bsc4I CCNNNNNNNGG 4 cut(s) 331, 687, 792, 834
Bse3DI GCAATG 3 cut(s) 112, 663, 810
BseBI CCWGG 1 cut(s) 411
BseDI CCNNGG 1 cut(s) 330
BseGI GGATG 3 cut(s) 292, 535, 801
BseLI CCNNNNNNNGG 4 cut(s) 331, 687, 792, 834
BseMI GCAATG 3 cut(s) 112, 663, 810
BseMII CTCAG 3 cut(s) 36, 417, 444
BseYI CCCAGC 1 cut(s) 198
BshFI GGCC 3 cut(s) 348, 691, 792
BsiSI CCGG 1 cut(s) 793
BslFI GGGAC 3 cut(s) 391, 655, 810
BslI CCNNNNNNNGG 4 cut(s) 331, 687, 792, 834
BsmAI GTCTC 1 cut(s) 107
BsmFI GGGAC 3 cut(s) 391, 655, 810
BsnI GGCC 3 cut(s) 348, 691, 792
Bsp119I TTCGAA 1 cut(s) 214
BspACI CCGC 3 cut(s) 231, 269, 786
BspANI GGCC 3 cut(s) 348, 691, 792
BspCNI CTCAG 3 cut(s) 37, 418, 445
BspLI GGNNCC 1 cut(s) 784
BspT104I TTCGAA 1 cut(s) 214
BsrDI GCAATG 3 cut(s) 112, 663, 810
BssECI CCNNGG 1 cut(s) 330
BssT1I CCWWGG 1 cut(s) 330
Bst2UI CCWGG 1 cut(s) 411
Bst4CI ACNGT 3 cut(s) 394, 590, 625
Bst6I CTCTTC 1 cut(s) 105
BstAPI GCANNNNNTGC 1 cut(s) 227
BstBI TTCGAA 1 cut(s) 214
BstC8I GCNNGC 1 cut(s) 790
BstDEI CTNAG 6 cut(s) 45, 121, 426, 453, 821, 829
BstENI CCTNNNNNAGG 1 cut(s) 832
BstF5I GGATG 3 cut(s) 292, 535, 801
BstMAI GTCTC 1 cut(s) 107
BstMWI GCNNNNNNNGC 1 cut(s) 227
BstNI CCWGG 1 cut(s) 411
BstNSI RCATGY 1 cut(s) 666
BstSCI CCNGG 1 cut(s) 409
BstSFI CTRYAG 1 cut(s) 366
BstXI CCANNNNNNTGG 1 cut(s) 557
BsuRI GGCC 3 cut(s) 348, 691, 792
BtgZI GCGATG 1 cut(s) 477
BtsCI GGATG 3 cut(s) 292, 535, 801
BtsIMutI CAGTG 1 cut(s) 621
Cac8I GCNNGC 1 cut(s) 790
Csp6I GTAC 1 cut(s) 247
CviAII CATG 4 cut(s) 41, 142, 565, 663
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 6 cut(s) 45, 121, 426, 453, 821, 829
EaeI YGGCCR 1 cut(s) 790
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
Eco130I CCWWGG 1 cut(s) 330
Eco32I GATATC 1 cut(s) 416
EcoNI CCTNNNNNAGG 1 cut(s) 832
EcoRI GAATTC 1 cut(s) 537
EcoRII CCWGG 1 cut(s) 409
EcoRV GATATC 1 cut(s) 416
EcoT14I CCWWGG 1 cut(s) 330
ErhI CCWWGG 1 cut(s) 330
FaeI CATG 4 cut(s) 44, 145, 568, 666
FalI AAGNNNNNCTT 2 cut(s) 195, 227
FaqI GGGAC 3 cut(s) 391, 655, 810
FatI CATG 4 cut(s) 40, 141, 564, 662
FblI GTMKAC 2 cut(s) 208, 508
Fnu4HI GCNGC 2 cut(s) 231, 269
FokI GGATG 3 cut(s) 299, 542, 808
Fsp4HI GCNGC 2 cut(s) 231, 269
GluI GCNGC 2 cut(s) 231, 269
GsaI CCCAGC 1 cut(s) 202
HaeIII GGCC 3 cut(s) 348, 691, 792
HapII CCGG 1 cut(s) 793
Hin1II CATG 4 cut(s) 44, 145, 568, 666
HincII GTYRAC 3 cut(s) 450, 509, 628
HindII GTYRAC 3 cut(s) 450, 509, 628
HinfI GANTC 4 cut(s) 379, 599, 700, 806
HpaI GTTAAC 1 cut(s) 450
HpaII CCGG 1 cut(s) 793
HphI GGTGA 1 cut(s) 758
Hpy166II GTNNAC 5 cut(s) 185, 209, 450, 509, 628
Hpy188I TCNGA 3 cut(s) 175, 226, 340
Hpy188III TCNNGA 2 cut(s) 419, 478
Hpy8I GTNNAC 5 cut(s) 185, 209, 450, 509, 628
HpyAV CCTTC 1 cut(s) 197
HpyCH4III ACNGT 3 cut(s) 394, 590, 625
HpyCH4V TGCA 3 cut(s) 105, 253, 401
HpyF10VI GCNNNNNNNGC 1 cut(s) 227
HpyF3I CTNAG 6 cut(s) 45, 121, 426, 453, 821, 829
Hsp92II CATG 4 cut(s) 44, 145, 568, 666
KspAI GTTAAC 1 cut(s) 450
LweI GCATC 2 cut(s) 217, 230
MboII GAAGA 2 cut(s) 47, 122
MluCI AATT 6 cut(s) 35, 319, 358, 537, 693, 773
MlyI GAGTC 2 cut(s) 373, 709
MmeI TCCRAC 3 cut(s) 76, 471, 588
MnlI CCTC 3 cut(s) 40, 604, 838
MseI TTAA 3 cut(s) 264, 449, 776
MslI CAYNNNNRTG 3 cut(s) 285, 762, 815
MspA1I CMGCKG 1 cut(s) 788
MspI CCGG 1 cut(s) 793
MspR9I CCNGG 1 cut(s) 411
MvaI CCWGG 1 cut(s) 411
MwoI GCNNNNNNNGC 1 cut(s) 227
NlaIII CATG 4 cut(s) 44, 145, 568, 666
NlaIV GGNNCC 1 cut(s) 784
NspI RCATGY 1 cut(s) 666
NspV TTCGAA 1 cut(s) 214
PfeI GAWTC 2 cut(s) 599, 806
PfoI TCCNGGA 1 cut(s) 409
PkrI GCNGC 2 cut(s) 232, 270
PleI GAGTC 2 cut(s) 373, 708
PpsI GAGTC 2 cut(s) 373, 708
Psp6I CCWGG 1 cut(s) 409
PspFI CCCAGC 1 cut(s) 198
PspGI CCWGG 1 cut(s) 409
PspN4I GGNNCC 1 cut(s) 784
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
RseI CAYNNNNRTG 3 cut(s) 285, 762, 815
SalI GTCGAC 1 cut(s) 507
SaqAI TTAA 3 cut(s) 264, 449, 776
SatI GCNGC 2 cut(s) 231, 269
ScaI AGTACT 1 cut(s) 248
SchI GAGTC 2 cut(s) 373, 709
ScrFI CCNGG 1 cut(s) 411
SfaNI GCATC 2 cut(s) 217, 230
SfcI CTRYAG 1 cut(s) 366
SfuI TTCGAA 1 cut(s) 214
SmiMI CAYNNNNRTG 3 cut(s) 285, 762, 815
Sse9I AATT 6 cut(s) 35, 319, 358, 537, 693, 773
SsiI CCGC 3 cut(s) 231, 269, 786
SspI AATATT 1 cut(s) 304
StyD4I CCNGG 1 cut(s) 409
StyI CCWWGG 1 cut(s) 330
TaaI ACNGT 3 cut(s) 394, 590, 625
TaqI TCGA 5 cut(s) 214, 389, 508, 521, 597
TasI AATT 6 cut(s) 35, 319, 358, 537, 693, 773
TatI WGTACW 1 cut(s) 246
TauI GCSGC 2 cut(s) 233, 271
TfiI GAWTC 2 cut(s) 599, 806
Tru1I TTAA 3 cut(s) 264, 449, 776
Tru9I TTAA 3 cut(s) 264, 449, 776
TscAI CASTG 1 cut(s) 628
TspDTI ATGAA 7 cut(s) 29, 59, 123, 150, 330, 553, 780
TspGWI ACGGA 1 cut(s) 542
TspRI CASTG 1 cut(s) 628
XagI CCTNNNNNAGG 1 cut(s) 832
XapI RAATTY 3 cut(s) 319, 358, 537
XceI RCATGY 1 cut(s) 666
XmiI GTMKAC 2 cut(s) 208, 508
ZrmI AGTACT 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.