Rroxscaffold_2G00103860

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000083
Physical Location & Seq
Reverse (-)
26895383 .. 26897147
1765 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00103860.1

Sequence Viewer

Length: 486 bp
ATGGAGGGTGACGGCGGCGGCGAACTACTCGTAGTCCAAGGACACCAAGTCGCCGGTGAAGAAGGCCAAGAAGAATTGGAGTATCTGCACTACGGTTCCAGACCTATAATCGACAGAGATGCGAAATCTACAAATATCTTGTTGAATGAAAACTTTCAAGCCAAACAATCTTATTTTGGTCTGTCAAGAATTTTTCCTGCTGAGGATGGGACTCGTCAATGGACACGTGTCACCGGAACTCCTGGATACCTTGACCCTGAGTACTACCTATCAAACATGTTAAATGAGAAAAGTGATGTTTATAGCTTTGGGATTGTGCTGTTGGAGATAATCACAAGTAGACCTGTGTTATCAAAGACACATGAGAAAATTCACATTGCTCAATGGGTTAGTTTCATGGTTGAGAAAAGGGACATTATTAGTATCATAGATTCGAGGCTAAAAGGCAAATTTGATAGTATTCTGTGTGGAAAGCTGTTGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_4 LRR_8 Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

161

Amino Acids

18.24

Weight (kDa)

5.39

Isoelectric Point (pI)

40.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 26 - 128 1.8e-17 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 26 - 116 3.9e-14 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000083)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07560 AT1G51790 AT1G51790 AT1G51790 AT1G51800 AT1G51805 AT1G51805 AT1G51810 AT1G51820 AT1G51820 AT1G51830 AT1G51830 AT1G51840 AT1G51840 AT1G51840 AT1G51840 AT1G51840 AT1G51850 AT1G51850 AT1G51860 AT1G51860 AT1G51870 AT1G51870 AT1G51880 AT1G51880 AT1G51880 AT1G51890 AT1G51890 AT1G51890 AT1G51890 AT1G51890 AT1G51910 AT2G04300 AT2G04300 AT2G28960 AT2G28960 AT2G28970 AT2G28970 AT2G28990 AT2G28990 AT2G29000 AT3G21340 AT3G46350 AT5G59616 AT5G59650 AT5G59650 AT5G59660 AT5G59660 AT5G59660 AT5G59670 AT5G59670 AT5G59680
fragaria_vesca FvH4_2g03270 FvH4_3g21300 FvH4_6g32660 FvH4_6g32660 FvH4_6g32670 FvH4_6g32670 FvH4_6g32690 FvH4_6g32690 FvH4_6g32691 FvH4_6g32700 FvH4_6g32740 FvH4_6g32750 FvH4_6g33210 FvH4_6g33210 FvH4_7g24270 FvH4_7g24280 FvH4_7g24291 FvH4_7g24300
malus_domestica MD09G1198400.v1.1 MD09G1198600.v1.1 MD09G1199100.v1.1 MD09G1199200.v1.1 MD09G1199300.v1.1 MD09G1199500.v1.1 MD09G1199600.v1.1 MD17G1179300.v1.1 MD17G1180200.v1.1 MD17G1266000.v1.1
prunus_persica Prupe.1G438900_v2.0.a1 Prupe.1G439000_v2.0.a1 Prupe.1G439100_v2.0.a1 Prupe.3G019400_v2.0.a1 Prupe.3G021900_v2.0.a1 Prupe.3G054500_v2.0.a1 Prupe.3G054500_v2.0.a1 Prupe.3G055100_v2.0.a1 Prupe.3G055400_v2.0.a1 Prupe.3G055500_v2.0.a1 Prupe.3G055600_v2.0.a1 Prupe.3G055700_v2.0.a1 Prupe.3G055800_v2.0.a1 Prupe.3G055900_v2.0.a1 Prupe.3G055900_v2.0.a1 Prupe.3G056000_v2.0.a1 Prupe.3G056000_v2.0.a1 Prupe.3G056100_v2.0.a1 Prupe.3G209600_v2.0.a1 Prupe.3G209700_v2.0.a1 Prupe.6G291100_v2.0.a1 Prupe.7G208900_v2.0.a1 Prupe.8G038300_v2.0.a1
pyrus_communis pycom09g11570 pycom09g11580 pycom09g11610 pycom09g11630 pycom09g11640 pycom17g18840 pycom17g18910 pycom17g18930 pycom17g18940
rosa_chinensis RchiOBHm_Chr1g0317521 RchiOBHm_Chr1g0317541 RchiOBHm_Chr2g0123351 RchiOBHm_Chr2g0141181 RchiOBHm_Chr2g0141191 RchiOBHm_Chr2g0141211 RchiOBHm_Chr2g0141221 RchiOBHm_Chr2g0141261 RchiOBHm_Chr2g0141271 RchiOBHm_Chr2g0141311 RchiOBHm_Chr2g0141331 RchiOBHm_Chr2g0141371 RchiOBHm_Chr2g0141391 RchiOBHm_Chr2g0141401 RchiOBHm_Chr2g0141431 RchiOBHm_Chr2g0141481 RchiOBHm_Chr2g0141491 RchiOBHm_Chr2g0141591 RchiOBHm_Chr2g0141601 RchiOBHm_Chr2g0141611 RchiOBHm_Chr2g0141631 RchiOBHm_Chr2g0141641 RchiOBHm_Chr2g0141661 RchiOBHm_Chr2g0141681 RchiOBHm_Chr2g0141701 RchiOBHm_Chr2g0141781 RchiOBHm_Chr2g0141811 RchiOBHm_Chr2g0141821 RchiOBHm_Chr3g0479311 RchiOBHm_Chr3g0495751 RchiOBHm_Chr4g0404741 RchiOBHm_Chr4g0410341 RchiOBHm_Chr4g0418371 RchiOBHm_Chr4g0438651 RchiOBHm_Chr5g0036411 RchiOBHm_Chr5g0036491 RchiOBHm_Chr5g0042391 RchiOBHm_Chr6g0279871 RchiOBHm_Chr7g0192921 RchiOBHm_Chr7g0214901 RchiOBHm_Chr7g0234931
rosa_laevigata RLG00000003432 RLG00000008806 RLG00000013062 RLG00000019514 RLG00000019923 RLG00000019924 RLG00000019925 RLG00000019930 RLG00000019931 RLG00000019934 RLG00000019937 RLG00000019938 RLG00000033697
rosa_multiflora Rmu_co8002302.1_g000001 Rmu_sc0000147.1_g000031 Rmu_sc0000463.1_g000005 Rmu_sc0000712.1_g000003 Rmu_sc0001483.1_g000017 Rmu_sc0001554.1_g000002 Rmu_sc0001554.1_g000005 Rmu_sc0001554.1_g000008 Rmu_sc0001981.1_g000017 Rmu_sc0002040.1_g000056 Rmu_sc0002755.1_g000018 Rmu_sc0002804.1_g000016 Rmu_sc0002928.1_g000015 Rmu_sc0003040.1_g000008 Rmu_sc0003040.1_g000018 Rmu_sc0004512.1_g000001 Rmu_sc0004512.1_g000004 Rmu_sc0005507.1_g000001 Rmu_sc0005507.1_g000009 Rmu_sc0005507.1_g000033 Rmu_sc0005507.1_g000037 Rmu_sc0005507.1_g000043 Rmu_sc0005507.1_g000047 Rmu_sc0006318.1_g000004 Rmu_sc0006318.1_g000014 Rmu_sc0006318.1_g000021 Rmu_sc0006556.1_g000001 Rmu_sc0007208.1_g000002 Rmu_sc0007208.1_g000003 Rmu_sc0007208.1_g000006 Rmu_sc0007208.1_g000008
rosa_roxburghii Rroxscaffold_1G00044430 Rroxscaffold_2G00103420 Rroxscaffold_2G00103470 Rroxscaffold_2G00103490 Rroxscaffold_2G00103500 Rroxscaffold_2G00103520 Rroxscaffold_2G00103530 Rroxscaffold_2G00103540 Rroxscaffold_2G00103550 Rroxscaffold_2G00103570 Rroxscaffold_2G00103770 Rroxscaffold_2G00103780 Rroxscaffold_2G00103800 Rroxscaffold_2G00103820 Rroxscaffold_2G00103860 Rroxscaffold_2G00103890 Rroxscaffold_2G00103930 Rroxscaffold_2G00103940 Rroxscaffold_2G00104010 Rroxscaffold_2G00104030 Rroxscaffold_2G00104050 Rroxscaffold_2G00104060 Rroxscaffold_2G00104070 Rroxscaffold_2G00104090 Rroxscaffold_2G00104100 Rroxscaffold_2G00104120 Rroxscaffold_2G00104130 Rroxscaffold_4G00331710
rosa_rugosa Rorug02G0367500 Rorug02G0367500 Rorug02G0367600 Rorug02G0367800 Rorug02G0367800 Rorug02G0367900 Rorug02G0368100 Rorug02G0368100 Rorug02G0368100 Rorug02G0368200 Rorug02G0368700 Rorug02G0368900 Rorug05G0155600 Rorug05G0155700 Rorug05G0155800 Rorug05G0156700 Rorug05G0157300
rosa_samantha Rh1AG028000 Rh2AG418700 Rh2AG418900 Rh2AG419000 Rh2AG419100 Rh2AG419400 Rh2AG419600 Rh2AG419800 Rh2AG420400 Rh2AG421000 Rh2BG428500 Rh2BG428600 Rh2BG428800 Rh2BG428900 Rh2BG429300 Rh2BG429400 Rh2BG429700 Rh2BG429900 Rh2BG430000 Rh2BG430700 Rh2CG405100 Rh2CG405200 Rh2CG405300 Rh2CG405500 Rh2CG405600 Rh2CG405700 Rh2CG406000 Rh2CG406100 Rh2CG406300 Rh2CG406600 Rh2CG406700 Rh2CG407500 Rh2CG408100 Rh2DG438500 Rh3DG123900 Rh3DG124000 Rh5BG249700 Rh5BG482500 Rh5CG281500 Rh5CG507300 Rh7DG133300
rosa_wichuraiana Rw0G019720 Rw0G019730 Rw0G019750 Rw0G023010 Rw2G034340 Rw2G034350 Rw2G034370 Rw2G034380 Rw2G034400 Rw2G034430 Rw2G034470 Rw2G034480 Rw2G034510 Rw5G022890 Rw5G026410 Rw5G032710 Rw5G042850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 340
AciI CCGC 2 cut(s) 15, 18
AcsI RAATTY 3 cut(s) 189, 369, 449
AcvI CACGTG 1 cut(s) 227
AfaI GTAC 1 cut(s) 263
AflIII ACRYGT 3 cut(s) 224, 226, 276
AgsI TTSAA 3 cut(s) 145, 158, 481
AhdI GACNNNNNGTC 1 cut(s) 47
AjnI CCWGG 1 cut(s) 241
AluBI AGCT 2 cut(s) 306, 475
AluI AGCT 2 cut(s) 306, 475
AoxI GGCC 1 cut(s) 64
ApoI RAATTY 3 cut(s) 189, 369, 449
Asp700I GAANNNNTTC 1 cut(s) 153
AsuHPI GGTGA 3 cut(s) 20, 68, 223
BbrPI CACGTG 1 cut(s) 227
BbvCI CCTCAGC 1 cut(s) 201
BccI CCATC 1 cut(s) 200
BceAI ACGGC 1 cut(s) 28
BcgI CGANNNNNNTGC 2 cut(s) 101, 135
BciT130I CCWGG 1 cut(s) 243
BciVI GTATCC 1 cut(s) 239
BfuI GTATCC 1 cut(s) 239
BisI GCNGC 2 cut(s) 16, 19
BlsI GCNGC 2 cut(s) 17, 20
BmcAI AGTACT 1 cut(s) 263
Bme1390I CCNGG 1 cut(s) 243
BmeRI GACNNNNNGTC 1 cut(s) 47
BmiI GGNNCC 1 cut(s) 97
BmrFI CCNGG 1 cut(s) 243
BmsI GCATC 1 cut(s) 109
BoxI GACNNNNGTC 1 cut(s) 227
Bpu10I CCTNAGC 1 cut(s) 201
BsaAI YACGTR 1 cut(s) 227
BsaJI CCNNGG 1 cut(s) 37
BsaWI WCCGGW 1 cut(s) 233
BsaXI ACNNNNNCTCC 2 cut(s) 223, 253
Bse118I RCCGGY 1 cut(s) 53
Bse3DI GCAATG 1 cut(s) 375
BseBI CCWGG 1 cut(s) 243
BseDI CCNNGG 1 cut(s) 37
BseGI GGATG 1 cut(s) 211
BseMI GCAATG 1 cut(s) 375
BseMII CTCAG 2 cut(s) 192, 249
BsgI GTGCAG 1 cut(s) 71
BshFI GGCC 1 cut(s) 66
BsiSI CCGG 2 cut(s) 54, 234
BslFI GGGAC 2 cut(s) 223, 425
BsmFI GGGAC 2 cut(s) 223, 425
BsnI GGCC 1 cut(s) 66
BspACI CCGC 2 cut(s) 15, 18
BspANI GGCC 1 cut(s) 66
BspCNI CTCAG 2 cut(s) 193, 250
BspLI GGNNCC 1 cut(s) 97
BsrDI GCAATG 1 cut(s) 375
BsrFI RCCGGY 1 cut(s) 53
BssAI RCCGGY 1 cut(s) 53
BssECI CCNNGG 1 cut(s) 37
BssT1I CCWWGG 1 cut(s) 37
Bst2UI CCWGG 1 cut(s) 243
Bst4CI ACNGT 1 cut(s) 95
BstBAI YACGTR 1 cut(s) 227
BstDEI CTNAG 2 cut(s) 201, 258
BstF5I GGATG 1 cut(s) 211
BstNI CCWGG 1 cut(s) 243
BstNSI RCATGY 1 cut(s) 280
BstPAI GACNNNNGTC 1 cut(s) 227
BstSCI CCNGG 1 cut(s) 241
BsuI GTATCC 1 cut(s) 239
BsuRI GGCC 1 cut(s) 66
BtsCI GGATG 1 cut(s) 211
Cfr10I RCCGGY 1 cut(s) 53
Csp6I GTAC 1 cut(s) 262
CviAII CATG 3 cut(s) 277, 362, 397
CviJI RGCY 5 cut(s) 66, 161, 306, 439, 475
CviKI_1 RGCY 5 cut(s) 66, 161, 306, 439, 475
CviQI GTAC 1 cut(s) 262
DdeI CTNAG 2 cut(s) 201, 258
DriI GACNNNNNGTC 1 cut(s) 47
Eam1105I GACNNNNNGTC 1 cut(s) 47
Eco130I CCWWGG 1 cut(s) 37
Eco72I CACGTG 1 cut(s) 227
EcoRII CCWGG 1 cut(s) 241
EcoT14I CCWWGG 1 cut(s) 37
ErhI CCWWGG 1 cut(s) 37
FaeI CATG 3 cut(s) 280, 365, 400
FaiI YATR 6 cut(s) 107, 278, 303, 363, 398, 428
FaqI GGGAC 2 cut(s) 223, 425
FatI CATG 3 cut(s) 276, 361, 396
FblI GTMKAC 1 cut(s) 340
Fnu4HI GCNGC 2 cut(s) 16, 19
FokI GGATG 1 cut(s) 218
Fsp4HI GCNGC 2 cut(s) 16, 19
GluI GCNGC 2 cut(s) 16, 19
HaeIII GGCC 1 cut(s) 66
HapII CCGG 2 cut(s) 54, 234
Hin1II CATG 3 cut(s) 280, 365, 400
HinfI GANTC 2 cut(s) 211, 431
HpaII CCGG 2 cut(s) 54, 234
HphI GGTGA 3 cut(s) 20, 68, 223
Hpy166II GTNNAC 1 cut(s) 341
Hpy188III TCNNGA 2 cut(s) 99, 186
Hpy8I GTNNAC 1 cut(s) 341
HpyAV CCTTC 1 cut(s) 56
HpyCH4III ACNGT 1 cut(s) 95
HpyCH4IV ACGT 1 cut(s) 226
HpyCH4V TGCA 1 cut(s) 88
HpyF3I CTNAG 2 cut(s) 201, 258
HpySE526I ACGT 1 cut(s) 226
Hsp92II CATG 3 cut(s) 280, 365, 400
LpnPI CCDG 8 cut(s) 67, 112, 210, 228, 247, 255, 270, 357
LweI GCATC 1 cut(s) 109
MaeII ACGT 1 cut(s) 226
MaeIII GTNAC 2 cut(s) 8, 229
MboII GAAGA 2 cut(s) 71, 83
MluCI AATT 4 cut(s) 74, 189, 369, 449
MlyI GAGTC 1 cut(s) 205
MmeI TCCRAC 1 cut(s) 303
MnlI CCTC 2 cut(s) 196, 429
MroXI GAANNNNTTC 1 cut(s) 153
MseI TTAA 1 cut(s) 281
MspI CCGG 2 cut(s) 54, 234
MspR9I CCNGG 1 cut(s) 243
MvaI CCWGG 1 cut(s) 243
NlaIII CATG 3 cut(s) 280, 365, 400
NlaIV GGNNCC 1 cut(s) 97
NmuCI GTSAC 2 cut(s) 8, 229
NspI RCATGY 1 cut(s) 280
PciI ACATGT 1 cut(s) 276
PcsI WCGNNNNNNNCGW 1 cut(s) 18
PdmI GAANNNNTTC 1 cut(s) 153
PfeI GAWTC 1 cut(s) 431
PfoI TCCNGGA 1 cut(s) 241
PkrI GCNGC 2 cut(s) 17, 20
PleI GAGTC 1 cut(s) 205
PmaCI CACGTG 1 cut(s) 227
PmlI CACGTG 1 cut(s) 227
PpsI GAGTC 1 cut(s) 205
Ppu21I YACGTR 1 cut(s) 227
PscI ACATGT 1 cut(s) 276
PshAI GACNNNNGTC 1 cut(s) 227
Psp6I CCWGG 1 cut(s) 241
PspCI CACGTG 1 cut(s) 227
PspGI CCWGG 1 cut(s) 241
PspN4I GGNNCC 1 cut(s) 97
RsaI GTAC 1 cut(s) 263
RsaNI GTAC 1 cut(s) 262
SaqAI TTAA 1 cut(s) 281
SatI GCNGC 2 cut(s) 16, 19
ScaI AGTACT 1 cut(s) 263
SchI GAGTC 1 cut(s) 205
ScrFI CCNGG 1 cut(s) 243
SetI ASST 7 cut(s) 106, 229, 252, 270, 308, 346, 477
SfaNI GCATC 1 cut(s) 109
SgrAI CRCCGGYG 1 cut(s) 53
Sse9I AATT 4 cut(s) 74, 189, 369, 449
SsiI CCGC 2 cut(s) 15, 18
StyD4I CCNGG 1 cut(s) 241
StyI CCWWGG 1 cut(s) 37
TaaI ACNGT 1 cut(s) 95
TaiI ACGT 1 cut(s) 229
TaqI TCGA 2 cut(s) 111, 434
TasI AATT 4 cut(s) 74, 189, 369, 449
TatI WGTACW 1 cut(s) 261
TauI GCSGC 2 cut(s) 18, 21
TfiI GAWTC 1 cut(s) 431
Tru1I TTAA 1 cut(s) 281
Tru9I TTAA 1 cut(s) 281
TseFI GTSAC 2 cut(s) 8, 229
Tsp45I GTSAC 2 cut(s) 8, 229
TspDTI ATGAA 2 cut(s) 162, 385
XapI RAATTY 3 cut(s) 189, 369, 449
XceI RCATGY 1 cut(s) 280
XmiI GTMKAC 1 cut(s) 340
XmnI GAANNNNTTC 1 cut(s) 153
ZrmI AGTACT 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.