RchiOBHm_Chr2g0141391

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000083
Physical Location & Seq
Reverse (-)
58953629 .. 58954678
1050 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51169

Sequence Viewer

Length: 633 bp
ATGAATACTTCATCCACAGTCGACTTTGACAAACACAACAGATACCAACCAGCATCAATTGTCATGAGCACAGCTGCCACATCACGAAATGCGAATGTTTCCTTGAATTTATGGTGGGATCCTCCTATTGATGCAAACGATACAGAATATTATGTTTACATGCACTTTGCAGAAATTGAAAAGCTCCAATCAAACGAGTCCAGAATGCAGTACATTACTAACCATGGAGAGCTCTTCCAGGAGTCATTTGCTGCTAGTTACTTGTATACCACAACAATTTACAGCATTAAAGGTTTGAGAGGAGGGCAGAACTTTTCAATCATCAAGGATGACAACTCTACCCTTCCACCCAGTATCAATGGACTTGAGGTCTACACACTGAAAGAATTCCTAGAATTAGAAACAAACCAAGTGGATGTTGAAGCAATCACATACGTCAAGTCAGCTTATGAAATTACAAAGAATTGGCAGGGAGATCCATGTCTACCACTAAACTACTTGTGGGAAGGCCTAATATGTAGCTATCCTGAAAACGATTCCCCAAGAATCATTTCCTTGGATTTATCAAACAACAATTTGACAGGGCCAATTCCGGACTTTTTGTCTCAATTGCCAGATTTAAATGTCCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_4 LRR_8 Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

210

Amino Acids

23.9

Weight (kDa)

4.36

Isoelectric Point (pI)

34.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 2 - 126 8.6e-27 Malectin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000083)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07560 AT1G51790 AT1G51790 AT1G51790 AT1G51800 AT1G51805 AT1G51805 AT1G51810 AT1G51820 AT1G51820 AT1G51830 AT1G51830 AT1G51840 AT1G51840 AT1G51840 AT1G51840 AT1G51840 AT1G51850 AT1G51850 AT1G51860 AT1G51860 AT1G51870 AT1G51870 AT1G51880 AT1G51880 AT1G51880 AT1G51890 AT1G51890 AT1G51890 AT1G51890 AT1G51890 AT1G51910 AT2G04300 AT2G04300 AT2G28960 AT2G28960 AT2G28970 AT2G28970 AT2G28990 AT2G28990 AT2G29000 AT3G21340 AT3G46350 AT5G59616 AT5G59650 AT5G59650 AT5G59660 AT5G59660 AT5G59660 AT5G59670 AT5G59670 AT5G59680
fragaria_vesca FvH4_2g03270 FvH4_3g21300 FvH4_6g32660 FvH4_6g32660 FvH4_6g32670 FvH4_6g32670 FvH4_6g32690 FvH4_6g32690 FvH4_6g32691 FvH4_6g32700 FvH4_6g32740 FvH4_6g32750 FvH4_6g33210 FvH4_6g33210 FvH4_7g24270 FvH4_7g24280 FvH4_7g24291 FvH4_7g24300
malus_domestica MD09G1198400.v1.1 MD09G1198600.v1.1 MD09G1199100.v1.1 MD09G1199200.v1.1 MD09G1199300.v1.1 MD09G1199500.v1.1 MD09G1199600.v1.1 MD17G1179300.v1.1 MD17G1180200.v1.1 MD17G1266000.v1.1
prunus_persica Prupe.1G438900_v2.0.a1 Prupe.1G439000_v2.0.a1 Prupe.1G439100_v2.0.a1 Prupe.3G019400_v2.0.a1 Prupe.3G021900_v2.0.a1 Prupe.3G054500_v2.0.a1 Prupe.3G054500_v2.0.a1 Prupe.3G055100_v2.0.a1 Prupe.3G055400_v2.0.a1 Prupe.3G055500_v2.0.a1 Prupe.3G055600_v2.0.a1 Prupe.3G055700_v2.0.a1 Prupe.3G055800_v2.0.a1 Prupe.3G055900_v2.0.a1 Prupe.3G055900_v2.0.a1 Prupe.3G056000_v2.0.a1 Prupe.3G056000_v2.0.a1 Prupe.3G056100_v2.0.a1 Prupe.3G209600_v2.0.a1 Prupe.3G209700_v2.0.a1 Prupe.6G291100_v2.0.a1 Prupe.7G208900_v2.0.a1 Prupe.8G038300_v2.0.a1
pyrus_communis pycom09g11570 pycom09g11580 pycom09g11610 pycom09g11630 pycom09g11640 pycom17g18840 pycom17g18910 pycom17g18930 pycom17g18940
rosa_chinensis RchiOBHm_Chr1g0317521 RchiOBHm_Chr1g0317541 RchiOBHm_Chr2g0123351 RchiOBHm_Chr2g0141181 RchiOBHm_Chr2g0141191 RchiOBHm_Chr2g0141211 RchiOBHm_Chr2g0141221 RchiOBHm_Chr2g0141261 RchiOBHm_Chr2g0141271 RchiOBHm_Chr2g0141311 RchiOBHm_Chr2g0141331 RchiOBHm_Chr2g0141371 RchiOBHm_Chr2g0141391 RchiOBHm_Chr2g0141401 RchiOBHm_Chr2g0141431 RchiOBHm_Chr2g0141481 RchiOBHm_Chr2g0141491 RchiOBHm_Chr2g0141591 RchiOBHm_Chr2g0141601 RchiOBHm_Chr2g0141611 RchiOBHm_Chr2g0141631 RchiOBHm_Chr2g0141641 RchiOBHm_Chr2g0141661 RchiOBHm_Chr2g0141681 RchiOBHm_Chr2g0141701 RchiOBHm_Chr2g0141781 RchiOBHm_Chr2g0141811 RchiOBHm_Chr2g0141821 RchiOBHm_Chr3g0479311 RchiOBHm_Chr3g0495751 RchiOBHm_Chr4g0404741 RchiOBHm_Chr4g0410341 RchiOBHm_Chr4g0418371 RchiOBHm_Chr4g0438651 RchiOBHm_Chr5g0036411 RchiOBHm_Chr5g0036491 RchiOBHm_Chr5g0042391 RchiOBHm_Chr6g0279871 RchiOBHm_Chr7g0192921 RchiOBHm_Chr7g0214901 RchiOBHm_Chr7g0234931
rosa_laevigata RLG00000003432 RLG00000008806 RLG00000013062 RLG00000019514 RLG00000019923 RLG00000019924 RLG00000019925 RLG00000019930 RLG00000019931 RLG00000019934 RLG00000019937 RLG00000019938 RLG00000033697
rosa_multiflora Rmu_co8002302.1_g000001 Rmu_sc0000147.1_g000031 Rmu_sc0000463.1_g000005 Rmu_sc0000712.1_g000003 Rmu_sc0001483.1_g000017 Rmu_sc0001554.1_g000002 Rmu_sc0001554.1_g000005 Rmu_sc0001554.1_g000008 Rmu_sc0001981.1_g000017 Rmu_sc0002040.1_g000056 Rmu_sc0002755.1_g000018 Rmu_sc0002804.1_g000016 Rmu_sc0002928.1_g000015 Rmu_sc0003040.1_g000008 Rmu_sc0003040.1_g000018 Rmu_sc0004512.1_g000001 Rmu_sc0004512.1_g000004 Rmu_sc0005507.1_g000001 Rmu_sc0005507.1_g000009 Rmu_sc0005507.1_g000033 Rmu_sc0005507.1_g000037 Rmu_sc0005507.1_g000043 Rmu_sc0005507.1_g000047 Rmu_sc0006318.1_g000004 Rmu_sc0006318.1_g000014 Rmu_sc0006318.1_g000021 Rmu_sc0006556.1_g000001 Rmu_sc0007208.1_g000002 Rmu_sc0007208.1_g000003 Rmu_sc0007208.1_g000006 Rmu_sc0007208.1_g000008
rosa_roxburghii Rroxscaffold_1G00044430 Rroxscaffold_2G00103420 Rroxscaffold_2G00103470 Rroxscaffold_2G00103490 Rroxscaffold_2G00103500 Rroxscaffold_2G00103520 Rroxscaffold_2G00103530 Rroxscaffold_2G00103540 Rroxscaffold_2G00103550 Rroxscaffold_2G00103570 Rroxscaffold_2G00103770 Rroxscaffold_2G00103780 Rroxscaffold_2G00103800 Rroxscaffold_2G00103820 Rroxscaffold_2G00103860 Rroxscaffold_2G00103890 Rroxscaffold_2G00103930 Rroxscaffold_2G00103940 Rroxscaffold_2G00104010 Rroxscaffold_2G00104030 Rroxscaffold_2G00104050 Rroxscaffold_2G00104060 Rroxscaffold_2G00104070 Rroxscaffold_2G00104090 Rroxscaffold_2G00104100 Rroxscaffold_2G00104120 Rroxscaffold_2G00104130 Rroxscaffold_4G00331710
rosa_rugosa Rorug02G0367500 Rorug02G0367500 Rorug02G0367600 Rorug02G0367800 Rorug02G0367800 Rorug02G0367900 Rorug02G0368100 Rorug02G0368100 Rorug02G0368100 Rorug02G0368200 Rorug02G0368700 Rorug02G0368900 Rorug05G0155600 Rorug05G0155700 Rorug05G0155800 Rorug05G0156700 Rorug05G0157300
rosa_samantha Rh1AG028000 Rh2AG418700 Rh2AG418900 Rh2AG419000 Rh2AG419100 Rh2AG419400 Rh2AG419600 Rh2AG419800 Rh2AG420400 Rh2AG421000 Rh2BG428500 Rh2BG428600 Rh2BG428800 Rh2BG428900 Rh2BG429300 Rh2BG429400 Rh2BG429700 Rh2BG429900 Rh2BG430000 Rh2BG430700 Rh2CG405100 Rh2CG405200 Rh2CG405300 Rh2CG405500 Rh2CG405600 Rh2CG405700 Rh2CG406000 Rh2CG406100 Rh2CG406300 Rh2CG406600 Rh2CG406700 Rh2CG407500 Rh2CG408100 Rh2DG438500 Rh3DG123900 Rh3DG124000 Rh5BG249700 Rh5BG482500 Rh5CG281500 Rh5CG507300 Rh7DG133300
rosa_wichuraiana Rw0G019720 Rw0G019730 Rw0G019750 Rw0G023010 Rw2G034340 Rw2G034350 Rw2G034370 Rw2G034380 Rw2G034400 Rw2G034430 Rw2G034470 Rw2G034480 Rw2G034510 Rw5G022890 Rw5G026410 Rw5G032710 Rw5G042850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 4 cut(s) 21, 266, 372, 484
AccIII TCCGGA 1 cut(s) 592
AclWI GGATC 3 cut(s) 113, 126, 470
AcsI RAATTY 2 cut(s) 106, 386
AfaI GTAC 1 cut(s) 212
AgsI TTSAA 4 cut(s) 106, 179, 318, 422
AhdI GACNNNNNGTC 2 cut(s) 368, 601
AjnI CCWGG 1 cut(s) 237
AjuI GAANNNNNNNTTGG 2 cut(s) 535, 567
AluBI AGCT 5 cut(s) 74, 184, 232, 446, 522
AluI AGCT 5 cut(s) 74, 184, 232, 446, 522
Alw21I GWGCWC 2 cut(s) 71, 234
Alw26I GTCTC 1 cut(s) 609
AlwI GGATC 3 cut(s) 113, 126, 470
Aor13HI TCCGGA 1 cut(s) 592
AoxI GGCC 2 cut(s) 508, 584
ApeKI GCWGC 2 cut(s) 74, 251
ApoI RAATTY 2 cut(s) 106, 386
Asp700I GAANNNNTTC 2 cut(s) 386, 550
AspS9I GGNCC 1 cut(s) 584
BamHI GGATCC 1 cut(s) 118
BanII GRGCYC 1 cut(s) 234
Bbv12I GWGCWC 2 cut(s) 71, 234
BbvI GCAGC 2 cut(s) 61, 238
BciT130I CCWGG 1 cut(s) 239
BcoDI GTCTC 1 cut(s) 609
BfaI CTAG 2 cut(s) 255, 392
BisI GCNGC 2 cut(s) 75, 252
BlsI GCNGC 2 cut(s) 76, 253
Bme1390I CCNGG 1 cut(s) 239
BmeRI GACNNNNNGTC 2 cut(s) 368, 601
BmgT120I GGNCC 1 cut(s) 584
BmiI GGNNCC 1 cut(s) 120
BmrFI CCNGG 1 cut(s) 239
BmrI ACTGGG 1 cut(s) 345
BmsI GCATC 2 cut(s) 62, 121
BmuI ACTGGG 1 cut(s) 345
BpuEI CTTGAG 1 cut(s) 386
BsaJI CCNNGG 2 cut(s) 223, 555
BsaWI WCCGGW 1 cut(s) 592
Bse1I ACTGG 1 cut(s) 351
BseAI TCCGGA 1 cut(s) 592
BseBI CCWGG 1 cut(s) 239
BseDI CCNNGG 2 cut(s) 223, 555
BseGI GGATG 3 cut(s) 11, 334, 421
BseNI ACTGG 1 cut(s) 351
BseRI GAGGAG 1 cut(s) 315
BseXI GCAGC 2 cut(s) 61, 238
BshFI GGCC 2 cut(s) 510, 586
BsiHKAI GWGCWC 2 cut(s) 71, 234
BsiSI CCGG 1 cut(s) 593
BsmAI GTCTC 1 cut(s) 609
BsmI GAATGC 1 cut(s) 210
BsnI GGCC 2 cut(s) 510, 586
Bsp1286I GDGCHC 2 cut(s) 71, 234
Bsp13I TCCGGA 1 cut(s) 592
Bsp143I GATC 2 cut(s) 118, 475
Bsp19I CCATGG 1 cut(s) 223
BspANI GGCC 2 cut(s) 510, 586
BspEI TCCGGA 1 cut(s) 592
BspHI TCATGA 1 cut(s) 63
BspLI GGNNCC 1 cut(s) 120
BspPI GGATC 3 cut(s) 113, 126, 470
BspQI GCTCTTC 1 cut(s) 239
BsrI ACTGG 1 cut(s) 351
BssECI CCNNGG 2 cut(s) 223, 555
BssMI GATC 2 cut(s) 118, 475
BssNAI GTATAC 1 cut(s) 267
BssT1I CCWWGG 2 cut(s) 223, 555
Bst1107I GTATAC 1 cut(s) 267
Bst2UI CCWGG 1 cut(s) 239
Bst4CI ACNGT 1 cut(s) 19
Bst6I CTCTTC 1 cut(s) 239
BstDSI CCRYGG 1 cut(s) 223
BstF5I GGATG 3 cut(s) 11, 334, 421
BstKTI GATC 2 cut(s) 121, 478
BstMAI GTCTC 1 cut(s) 609
BstMBI GATC 2 cut(s) 118, 475
BstNI CCWGG 1 cut(s) 239
BstNSI RCATGY 1 cut(s) 163
BstSCI CCNGG 1 cut(s) 237
BstV1I GCAGC 2 cut(s) 61, 238
BstX2I RGATCY 2 cut(s) 118, 475
BstYI RGATCY 2 cut(s) 118, 475
BstZ17I GTATAC 1 cut(s) 267
BsuRI GGCC 2 cut(s) 510, 586
BtgI CCRYGG 1 cut(s) 223
BtsCI GGATG 3 cut(s) 11, 334, 421
BtsIMutI CAGTG 1 cut(s) 377
CciI TCATGA 1 cut(s) 63
Cfr13I GGNCC 1 cut(s) 584
Csp6I GTAC 1 cut(s) 211
CspCI CAANNNNNGTGG 2 cut(s) 393, 428
CviAII CATG 4 cut(s) 64, 160, 224, 480
CviJI RGCY 7 cut(s) 74, 184, 232, 446, 510, 522, 586
CviKI_1 RGCY 7 cut(s) 74, 184, 232, 446, 510, 522, 586
CviQI GTAC 1 cut(s) 211
DpnI GATC 2 cut(s) 120, 477
DpnII GATC 2 cut(s) 118, 475
DraI TTTAAA 1 cut(s) 621
DriI GACNNNNNGTC 2 cut(s) 368, 601
Eam1104I CTCTTC 1 cut(s) 239
Eam1105I GACNNNNNGTC 2 cut(s) 368, 601
EarI CTCTTC 1 cut(s) 239
Ecl136II GAGCTC 1 cut(s) 232
Eco130I CCWWGG 2 cut(s) 223, 555
Eco147I AGGCCT 1 cut(s) 510
Eco24I GRGCYC 1 cut(s) 234
Eco53kI GAGCTC 1 cut(s) 232
EcoICRI GAGCTC 1 cut(s) 232
EcoRI GAATTC 1 cut(s) 386
EcoRII CCWGG 1 cut(s) 237
EcoT14I CCWWGG 2 cut(s) 223, 555
EcoT38I GRGCYC 1 cut(s) 234
ErhI CCWWGG 2 cut(s) 223, 555
FaeI CATG 4 cut(s) 67, 163, 227, 483
FatI CATG 4 cut(s) 63, 159, 223, 479
FblI GTMKAC 4 cut(s) 21, 266, 372, 484
Fnu4HI GCNGC 2 cut(s) 75, 252
FokI GGATG 2 cut(s) 341, 428
FriOI GRGCYC 1 cut(s) 234
Fsp4HI GCNGC 2 cut(s) 75, 252
FspBI CTAG 2 cut(s) 255, 392
GluI GCNGC 2 cut(s) 75, 252
HaeIII GGCC 2 cut(s) 510, 586
HapII CCGG 1 cut(s) 593
Hin1II CATG 4 cut(s) 67, 163, 227, 483
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HinfI GANTC 4 cut(s) 197, 242, 536, 546
HpaII CCGG 1 cut(s) 593
Hpy166II GTNNAC 5 cut(s) 22, 157, 267, 373, 485
Hpy188III TCNNGA 5 cut(s) 64, 84, 201, 527, 593
Hpy8I GTNNAC 5 cut(s) 22, 157, 267, 373, 485
HpyAV CCTTC 2 cut(s) 353, 500
HpyCH4III ACNGT 1 cut(s) 19
HpyCH4IV ACGT 1 cut(s) 435
HpyCH4V TGCA 4 cut(s) 134, 163, 170, 208
HpySE526I ACGT 1 cut(s) 435
Hsp92II CATG 4 cut(s) 67, 163, 227, 483
Kpn2I TCCGGA 1 cut(s) 592
Kzo9I GATC 2 cut(s) 118, 475
LguI GCTCTTC 1 cut(s) 239
LmnI GCTCC 1 cut(s) 189
Lsp1109I GCAGC 2 cut(s) 61, 238
LweI GCATC 2 cut(s) 62, 121
MaeI CTAG 2 cut(s) 255, 392
MaeII ACGT 1 cut(s) 435
MaeIII GTNAC 1 cut(s) 257
MalI GATC 2 cut(s) 120, 477
MboI GATC 2 cut(s) 118, 475
MboII GAAGA 1 cut(s) 226
MfeI CAATTG 2 cut(s) 57, 608
MflI RGATCY 2 cut(s) 118, 475
MhlI GDGCHC 2 cut(s) 71, 234
MlyI GAGTC 2 cut(s) 206, 251
MnlI CCTC 4 cut(s) 132, 293, 296, 361
MroI TCCGGA 1 cut(s) 592
MroXI GAANNNNTTC 2 cut(s) 386, 550
MseI TTAA 2 cut(s) 288, 620
MspA1I CMGCKG 1 cut(s) 74
MspI CCGG 1 cut(s) 593
MspR9I CCNGG 1 cut(s) 239
MunI CAATTG 2 cut(s) 57, 608
Mva1269I GAATGC 1 cut(s) 210
MvaI CCWGG 1 cut(s) 239
NcoI CCATGG 1 cut(s) 223
NdeII GATC 2 cut(s) 118, 475
NlaIII CATG 4 cut(s) 67, 163, 227, 483
NlaIV GGNNCC 1 cut(s) 120
NspI RCATGY 1 cut(s) 163
PagI TCATGA 1 cut(s) 63
PceI AGGCCT 1 cut(s) 510
PciSI GCTCTTC 1 cut(s) 239
PctI GAATGC 1 cut(s) 210
PdmI GAANNNNTTC 2 cut(s) 386, 550
PfeI GAWTC 2 cut(s) 536, 546
PfoI TCCNGGA 1 cut(s) 237
PkrI GCNGC 2 cut(s) 76, 253
PleI GAGTC 2 cut(s) 205, 250
PpsI GAGTC 2 cut(s) 205, 250
Psp124BI GAGCTC 1 cut(s) 234
Psp6I CCWGG 1 cut(s) 237
PspGI CCWGG 1 cut(s) 237
PspN4I GGNNCC 1 cut(s) 120
PspPI GGNCC 1 cut(s) 584
PsuI RGATCY 2 cut(s) 118, 475
PvuII CAGCTG 1 cut(s) 74
RsaI GTAC 1 cut(s) 212
RsaNI GTAC 1 cut(s) 211
SacI GAGCTC 1 cut(s) 234
SalI GTCGAC 1 cut(s) 20
SapI GCTCTTC 1 cut(s) 239
SaqAI TTAA 2 cut(s) 288, 620
SatI GCNGC 2 cut(s) 75, 252
Sau3AI GATC 2 cut(s) 118, 475
Sau96I GGNCC 1 cut(s) 584
SchI GAGTC 2 cut(s) 206, 251
ScrFI CCNGG 1 cut(s) 239
SduI GDGCHC 2 cut(s) 71, 234
SetI ASST 8 cut(s) 76, 186, 234, 295, 372, 438, 448, 524
SfaNI GCATC 2 cut(s) 62, 121
SmiI ATTTAAAT 1 cut(s) 621
SmlI CTYRAG 1 cut(s) 365
SmoI CTYRAG 1 cut(s) 365
SseBI AGGCCT 1 cut(s) 510
SspI AATATT 1 cut(s) 149
SspMI CTAG 2 cut(s) 255, 392
SstI GAGCTC 1 cut(s) 234
StuI AGGCCT 1 cut(s) 510
StyD4I CCNGG 1 cut(s) 237
StyI CCWWGG 2 cut(s) 223, 555
SwaI ATTTAAAT 1 cut(s) 621
TaaI ACNGT 1 cut(s) 19
TaiI ACGT 1 cut(s) 438
TaqI TCGA 1 cut(s) 21
TatI WGTACW 1 cut(s) 210
TfiI GAWTC 2 cut(s) 536, 546
Tru1I TTAA 2 cut(s) 288, 620
Tru9I TTAA 2 cut(s) 288, 620
TscAI CASTG 1 cut(s) 384
TseI GCWGC 2 cut(s) 74, 251
TspDTI ATGAA 2 cut(s) 17, 465
TspRI CASTG 1 cut(s) 384
XapI RAATTY 2 cut(s) 106, 386
XceI RCATGY 1 cut(s) 163
XmiI GTMKAC 4 cut(s) 21, 266, 372, 484
XmnI GAANNNNTTC 2 cut(s) 386, 550
XspI CTAG 2 cut(s) 255, 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.