Rroxscaffold_2G00104050

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
27163562 .. 27164603
1042 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00104050.1

Sequence Viewer

Length: 573 bp
ATGCTCACCGCCACCGCTACGGCCGCGGCGCGTGCAAGGCCACCCCAGACAGTGCGCAAGGACCATATGAAGCTAATGGAAGAAGTTTGGTATCCAGAGGATGTTCATGACCGCTTCTGGTATATCTACGAAAGCCTCGACAATTGGGAACAATTAAATACTTCATCCACCATCGACCCAGACAATCAGAACAGCTTTGAATTACCATCTGTTGTTATGAGTACTGCCATCAAGCCAAAAAATGTAAATGAGTCCTTGAATTTTTCTTGGCAGCCTACTGATCAAAATGCAGAATATTATATTTTCATGCATTTCGCAGAAGTTGAAAAGCTCCAACCAAACCAGACTAGATTTCAATACATTACCAAAAATGGAAAGATCTATAATGACCTATTTTCTTTGGAGTACATGTACCCAGCTACTAGTTACAGTAGTAAAGCAATGAGTGGAGGACAAGACATTTCAATCTTCAAGGCTGAGAATTCCACCCTTCCACCCATCCTCAATGCTTTTGAGATTTATAAGGTGAAAAAATTCGAAGAACTAGATACAAGTCAAGGAGAAGGTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

190

Amino Acids

22.06

Weight (kDa)

4.92

Isoelectric Point (pI)

38.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 28 - 176 3.7e-39 Malectin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000083)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07560 AT1G51790 AT1G51790 AT1G51790 AT1G51800 AT1G51805 AT1G51805 AT1G51810 AT1G51820 AT1G51820 AT1G51830 AT1G51830 AT1G51840 AT1G51840 AT1G51840 AT1G51840 AT1G51840 AT1G51850 AT1G51850 AT1G51860 AT1G51860 AT1G51870 AT1G51870 AT1G51880 AT1G51880 AT1G51880 AT1G51890 AT1G51890 AT1G51890 AT1G51890 AT1G51890 AT1G51910 AT2G04300 AT2G04300 AT2G28960 AT2G28960 AT2G28970 AT2G28970 AT2G28990 AT2G28990 AT2G29000 AT3G21340 AT3G46350 AT5G59616 AT5G59650 AT5G59650 AT5G59660 AT5G59660 AT5G59660 AT5G59670 AT5G59670 AT5G59680
fragaria_vesca FvH4_2g03270 FvH4_3g21300 FvH4_6g32660 FvH4_6g32660 FvH4_6g32670 FvH4_6g32670 FvH4_6g32690 FvH4_6g32690 FvH4_6g32691 FvH4_6g32700 FvH4_6g32740 FvH4_6g32750 FvH4_6g33210 FvH4_6g33210 FvH4_7g24270 FvH4_7g24280 FvH4_7g24291 FvH4_7g24300
malus_domestica MD09G1198400.v1.1 MD09G1198600.v1.1 MD09G1199100.v1.1 MD09G1199200.v1.1 MD09G1199300.v1.1 MD09G1199500.v1.1 MD09G1199600.v1.1 MD17G1179300.v1.1 MD17G1180200.v1.1 MD17G1266000.v1.1
prunus_persica Prupe.1G438900_v2.0.a1 Prupe.1G439000_v2.0.a1 Prupe.1G439100_v2.0.a1 Prupe.3G019400_v2.0.a1 Prupe.3G021900_v2.0.a1 Prupe.3G054500_v2.0.a1 Prupe.3G054500_v2.0.a1 Prupe.3G055100_v2.0.a1 Prupe.3G055400_v2.0.a1 Prupe.3G055500_v2.0.a1 Prupe.3G055600_v2.0.a1 Prupe.3G055700_v2.0.a1 Prupe.3G055800_v2.0.a1 Prupe.3G055900_v2.0.a1 Prupe.3G055900_v2.0.a1 Prupe.3G056000_v2.0.a1 Prupe.3G056000_v2.0.a1 Prupe.3G056100_v2.0.a1 Prupe.3G209600_v2.0.a1 Prupe.3G209700_v2.0.a1 Prupe.6G291100_v2.0.a1 Prupe.7G208900_v2.0.a1 Prupe.8G038300_v2.0.a1
pyrus_communis pycom09g11570 pycom09g11580 pycom09g11610 pycom09g11630 pycom09g11640 pycom17g18840 pycom17g18910 pycom17g18930 pycom17g18940
rosa_chinensis RchiOBHm_Chr1g0317521 RchiOBHm_Chr1g0317541 RchiOBHm_Chr2g0123351 RchiOBHm_Chr2g0141181 RchiOBHm_Chr2g0141191 RchiOBHm_Chr2g0141211 RchiOBHm_Chr2g0141221 RchiOBHm_Chr2g0141261 RchiOBHm_Chr2g0141271 RchiOBHm_Chr2g0141311 RchiOBHm_Chr2g0141331 RchiOBHm_Chr2g0141371 RchiOBHm_Chr2g0141391 RchiOBHm_Chr2g0141401 RchiOBHm_Chr2g0141431 RchiOBHm_Chr2g0141481 RchiOBHm_Chr2g0141491 RchiOBHm_Chr2g0141591 RchiOBHm_Chr2g0141601 RchiOBHm_Chr2g0141611 RchiOBHm_Chr2g0141631 RchiOBHm_Chr2g0141641 RchiOBHm_Chr2g0141661 RchiOBHm_Chr2g0141681 RchiOBHm_Chr2g0141701 RchiOBHm_Chr2g0141781 RchiOBHm_Chr2g0141811 RchiOBHm_Chr2g0141821 RchiOBHm_Chr3g0479311 RchiOBHm_Chr3g0495751 RchiOBHm_Chr4g0404741 RchiOBHm_Chr4g0410341 RchiOBHm_Chr4g0418371 RchiOBHm_Chr4g0438651 RchiOBHm_Chr5g0036411 RchiOBHm_Chr5g0036491 RchiOBHm_Chr5g0042391 RchiOBHm_Chr6g0279871 RchiOBHm_Chr7g0192921 RchiOBHm_Chr7g0214901 RchiOBHm_Chr7g0234931
rosa_laevigata RLG00000003432 RLG00000008806 RLG00000013062 RLG00000019514 RLG00000019923 RLG00000019924 RLG00000019925 RLG00000019930 RLG00000019931 RLG00000019934 RLG00000019937 RLG00000019938 RLG00000033697
rosa_multiflora Rmu_co8002302.1_g000001 Rmu_sc0000147.1_g000031 Rmu_sc0000463.1_g000005 Rmu_sc0000712.1_g000003 Rmu_sc0001483.1_g000017 Rmu_sc0001554.1_g000002 Rmu_sc0001554.1_g000005 Rmu_sc0001554.1_g000008 Rmu_sc0001981.1_g000017 Rmu_sc0002040.1_g000056 Rmu_sc0002755.1_g000018 Rmu_sc0002804.1_g000016 Rmu_sc0002928.1_g000015 Rmu_sc0003040.1_g000008 Rmu_sc0003040.1_g000018 Rmu_sc0004512.1_g000001 Rmu_sc0004512.1_g000004 Rmu_sc0005507.1_g000001 Rmu_sc0005507.1_g000009 Rmu_sc0005507.1_g000033 Rmu_sc0005507.1_g000037 Rmu_sc0005507.1_g000043 Rmu_sc0005507.1_g000047 Rmu_sc0006318.1_g000004 Rmu_sc0006318.1_g000014 Rmu_sc0006318.1_g000021 Rmu_sc0006556.1_g000001 Rmu_sc0007208.1_g000002 Rmu_sc0007208.1_g000003 Rmu_sc0007208.1_g000006 Rmu_sc0007208.1_g000008
rosa_roxburghii Rroxscaffold_1G00044430 Rroxscaffold_2G00103420 Rroxscaffold_2G00103470 Rroxscaffold_2G00103490 Rroxscaffold_2G00103500 Rroxscaffold_2G00103520 Rroxscaffold_2G00103530 Rroxscaffold_2G00103540 Rroxscaffold_2G00103550 Rroxscaffold_2G00103570 Rroxscaffold_2G00103770 Rroxscaffold_2G00103780 Rroxscaffold_2G00103800 Rroxscaffold_2G00103820 Rroxscaffold_2G00103860 Rroxscaffold_2G00103890 Rroxscaffold_2G00103930 Rroxscaffold_2G00103940 Rroxscaffold_2G00104010 Rroxscaffold_2G00104030 Rroxscaffold_2G00104050 Rroxscaffold_2G00104060 Rroxscaffold_2G00104070 Rroxscaffold_2G00104090 Rroxscaffold_2G00104100 Rroxscaffold_2G00104120 Rroxscaffold_2G00104130 Rroxscaffold_4G00331710
rosa_rugosa Rorug02G0367500 Rorug02G0367500 Rorug02G0367600 Rorug02G0367800 Rorug02G0367800 Rorug02G0367900 Rorug02G0368100 Rorug02G0368100 Rorug02G0368100 Rorug02G0368200 Rorug02G0368700 Rorug02G0368900 Rorug05G0155600 Rorug05G0155700 Rorug05G0155800 Rorug05G0156700 Rorug05G0157300
rosa_samantha Rh1AG028000 Rh2AG418700 Rh2AG418900 Rh2AG419000 Rh2AG419100 Rh2AG419400 Rh2AG419600 Rh2AG419800 Rh2AG420400 Rh2AG421000 Rh2BG428500 Rh2BG428600 Rh2BG428800 Rh2BG428900 Rh2BG429300 Rh2BG429400 Rh2BG429700 Rh2BG429900 Rh2BG430000 Rh2BG430700 Rh2CG405100 Rh2CG405200 Rh2CG405300 Rh2CG405500 Rh2CG405600 Rh2CG405700 Rh2CG406000 Rh2CG406100 Rh2CG406300 Rh2CG406600 Rh2CG406700 Rh2CG407500 Rh2CG408100 Rh2DG438500 Rh3DG123900 Rh3DG124000 Rh5BG249700 Rh5BG482500 Rh5CG281500 Rh5CG507300 Rh7DG133300
rosa_wichuraiana Rw0G019720 Rw0G019730 Rw0G019750 Rw0G023010 Rw2G034340 Rw2G034350 Rw2G034370 Rw2G034380 Rw2G034400 Rw2G034430 Rw2G034470 Rw2G034480 Rw2G034510 Rw5G022890 Rw5G026410 Rw5G032710 Rw5G042850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 522
Acc16I TGCGCA 1 cut(s) 56
AccII CGCG 2 cut(s) 26, 31
AciI CCGC 5 cut(s) 9, 15, 24, 26, 112
AcoI YGGCCR 1 cut(s) 21
AcsI RAATTY 3 cut(s) 259, 481, 533
AfaI GTAC 3 cut(s) 223, 407, 413
AflIII ACRYGT 1 cut(s) 408
AgsI TTSAA 6 cut(s) 200, 259, 326, 356, 465, 472
AhlI ACTAGT 1 cut(s) 422
AluBI AGCT 4 cut(s) 73, 195, 331, 419
AluI AGCT 4 cut(s) 73, 195, 331, 419
AoxI GGCC 2 cut(s) 21, 38
ApeKI GCWGC 1 cut(s) 271
ApoI RAATTY 3 cut(s) 259, 481, 533
Asp700I GAANNNNTTC 1 cut(s) 533
AspLEI GCGC 2 cut(s) 31, 57
AspS9I GGNCC 1 cut(s) 61
AsuHPI GGTGA 1 cut(s) 538
AsuII TTCGAA 1 cut(s) 537
AvaII GGWCC 1 cut(s) 61
BbvI GCAGC 1 cut(s) 283
BccI CCATC 4 cut(s) 179, 214, 236, 506
BceAI ACGGC 1 cut(s) 36
BciVI GTATCC 1 cut(s) 102
BclI TGATCA 1 cut(s) 280
BcuI ACTAGT 1 cut(s) 422
BfaI CTAG 3 cut(s) 348, 423, 545
BfuI GTATCC 1 cut(s) 102
BglII AGATCT 1 cut(s) 378
BisI GCNGC 3 cut(s) 24, 27, 272
BlsI GCNGC 3 cut(s) 25, 28, 273
BmcAI AGTACT 1 cut(s) 223
Bme18I GGWCC 1 cut(s) 61
BmgT120I GGNCC 1 cut(s) 61
Bpu14I TTCGAA 1 cut(s) 537
BsaJI CCNNGG 1 cut(s) 24
BsaXI ACNNNNNCTCC 2 cut(s) 395, 425
Bse3DI GCAATG 1 cut(s) 447
BseDI CCNNGG 1 cut(s) 24
BseGI GGATG 3 cut(s) 106, 164, 498
BseMI GCAATG 1 cut(s) 447
BseMII CTCAG 1 cut(s) 468
BseX3I CGGCCG 1 cut(s) 21
BseXI GCAGC 1 cut(s) 283
BseYI CCCAGC 1 cut(s) 415
Bsh1236I CGCG 2 cut(s) 26, 31
Bsh1285I CGRYCG 1 cut(s) 24
BshFI GGCC 2 cut(s) 23, 40
BsiEI CGRYCG 1 cut(s) 24
BsnI GGCC 2 cut(s) 23, 40
Bsp119I TTCGAA 1 cut(s) 537
Bsp143I GATC 2 cut(s) 280, 378
BspACI CCGC 5 cut(s) 9, 15, 24, 26, 112
BspANI GGCC 2 cut(s) 23, 40
BspCNI CTCAG 1 cut(s) 469
BspFNI CGCG 2 cut(s) 26, 31
BspHI TCATGA 1 cut(s) 106
BspT104I TTCGAA 1 cut(s) 537
BsrDI GCAATG 1 cut(s) 447
BssECI CCNNGG 1 cut(s) 24
BssMI GATC 2 cut(s) 280, 378
Bst4CI ACNGT 2 cut(s) 52, 431
BstBI TTCGAA 1 cut(s) 537
BstC8I GCNNGC 1 cut(s) 33
BstDEI CTNAG 1 cut(s) 477
BstDSI CCRYGG 1 cut(s) 24
BstF5I GGATG 3 cut(s) 106, 164, 498
BstFNI CGCG 2 cut(s) 26, 31
BstHHI GCGC 2 cut(s) 31, 57
BstKTI GATC 2 cut(s) 283, 381
BstMBI GATC 2 cut(s) 280, 378
BstMCI CGRYCG 1 cut(s) 24
BstMWI GCNNNNNNNGC 3 cut(s) 23, 32, 37
BstNSI RCATGY 1 cut(s) 412
BstUI CGCG 2 cut(s) 26, 31
BstV1I GCAGC 1 cut(s) 283
BstX2I RGATCY 1 cut(s) 378
BstYI RGATCY 1 cut(s) 378
BstZI CGGCCG 1 cut(s) 21
BsuI GTATCC 1 cut(s) 102
BsuRI GGCC 2 cut(s) 23, 40
BtgI CCRYGG 1 cut(s) 24
BtsCI GGATG 3 cut(s) 106, 164, 498
BtsIMutI CAGTG 1 cut(s) 57
Cac8I GCNNGC 1 cut(s) 33
CciI TCATGA 1 cut(s) 106
CfoI GCGC 2 cut(s) 31, 57
Cfr13I GGNCC 1 cut(s) 61
Cfr42I CCGCGG 1 cut(s) 27
Csp6I GTAC 3 cut(s) 222, 406, 412
CviAII CATG 3 cut(s) 107, 307, 409
CviQI GTAC 3 cut(s) 222, 406, 412
DdeI CTNAG 1 cut(s) 477
DpnI GATC 2 cut(s) 282, 380
DpnII GATC 2 cut(s) 280, 378
EaeI YGGCCR 1 cut(s) 21
EagI CGGCCG 1 cut(s) 21
EclXI CGGCCG 1 cut(s) 21
Eco47I GGWCC 1 cut(s) 61
Eco52I CGGCCG 1 cut(s) 21
EcoRI GAATTC 1 cut(s) 481
EcoT22I ATGCAT 1 cut(s) 312
FaeI CATG 3 cut(s) 110, 310, 412
FatI CATG 3 cut(s) 106, 306, 408
FauNDI CATATG 1 cut(s) 66
FbaI TGATCA 1 cut(s) 280
Fnu4HI GCNGC 3 cut(s) 24, 27, 272
FokI GGATG 3 cut(s) 113, 151, 485
Fsp4HI GCNGC 3 cut(s) 24, 27, 272
FspBI CTAG 3 cut(s) 348, 423, 545
FspI TGCGCA 1 cut(s) 56
GlaI GCGC 2 cut(s) 30, 56
GluI GCNGC 3 cut(s) 24, 27, 272
GsaI CCCAGC 1 cut(s) 419
HaeIII GGCC 2 cut(s) 23, 40
HhaI GCGC 2 cut(s) 31, 57
Hin1II CATG 3 cut(s) 110, 310, 412
Hin6I GCGC 2 cut(s) 29, 55
HinP1I GCGC 2 cut(s) 29, 55
HinfI GANTC 1 cut(s) 251
HphI GGTGA 1 cut(s) 538
Hpy188I TCNGA 1 cut(s) 189
Hpy188III TCNNGA 2 cut(s) 95, 107
HpyAV CCTTC 2 cut(s) 500, 557
HpyCH4III ACNGT 2 cut(s) 52, 431
HpyCH4V TGCA 3 cut(s) 35, 290, 310
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 32, 37
HpyF3I CTNAG 1 cut(s) 477
Hsp92II CATG 3 cut(s) 110, 310, 412
HspAI GCGC 2 cut(s) 29, 55
Ksp22I TGATCA 1 cut(s) 280
KspI CCGCGG 1 cut(s) 27
Kzo9I GATC 2 cut(s) 280, 378
LmnI GCTCC 1 cut(s) 336
LpnPI CCDG 6 cut(s) 59, 103, 108, 192, 356, 429
Lsp1109I GCAGC 1 cut(s) 283
MaeI CTAG 3 cut(s) 348, 423, 545
MaeIII GTNAC 1 cut(s) 425
MalI GATC 2 cut(s) 282, 380
MboI GATC 2 cut(s) 280, 378
MboII GAAGA 3 cut(s) 92, 460, 551
MfeI CAATTG 1 cut(s) 142
MflI RGATCY 1 cut(s) 378
MluCI AATT 6 cut(s) 142, 152, 200, 259, 481, 533
MlyI GAGTC 1 cut(s) 260
MmeI TCCRAC 1 cut(s) 358
MnlI CCTC 4 cut(s) 91, 146, 443, 512
Mph1103I ATGCAT 1 cut(s) 312
MroXI GAANNNNTTC 1 cut(s) 533
MseI TTAA 1 cut(s) 155
MspA1I CMGCKG 1 cut(s) 26
MunI CAATTG 1 cut(s) 142
MvnI CGCG 2 cut(s) 26, 31
MwoI GCNNNNNNNGC 3 cut(s) 23, 32, 37
NdeI CATATG 1 cut(s) 66
NdeII GATC 2 cut(s) 280, 378
NlaIII CATG 3 cut(s) 110, 310, 412
NsbI TGCGCA 1 cut(s) 56
NsiI ATGCAT 1 cut(s) 312
NspI RCATGY 1 cut(s) 412
NspV TTCGAA 1 cut(s) 537
PagI TCATGA 1 cut(s) 106
PciI ACATGT 1 cut(s) 408
PcsI WCGNNNNNNNCGW 1 cut(s) 135
PdmI GAANNNNTTC 1 cut(s) 533
PkrI GCNGC 3 cut(s) 25, 28, 273
PleI GAGTC 1 cut(s) 259
PpsI GAGTC 1 cut(s) 259
PscI ACATGT 1 cut(s) 408
PsiI TTATAA 1 cut(s) 522
PspFI CCCAGC 1 cut(s) 415
PspPI GGNCC 1 cut(s) 61
PsuI RGATCY 1 cut(s) 378
RsaI GTAC 3 cut(s) 223, 407, 413
RsaNI GTAC 3 cut(s) 222, 406, 412
SacII CCGCGG 1 cut(s) 27
SaqAI TTAA 1 cut(s) 155
SatI GCNGC 3 cut(s) 24, 27, 272
Sau3AI GATC 2 cut(s) 280, 378
Sau96I GGNCC 1 cut(s) 61
ScaI AGTACT 1 cut(s) 223
SchI GAGTC 1 cut(s) 260
SetI ASST 7 cut(s) 75, 197, 333, 393, 421, 528, 568
Sfr303I CCGCGG 1 cut(s) 27
SfuI TTCGAA 1 cut(s) 537
SgrBI CCGCGG 1 cut(s) 27
SinI GGWCC 1 cut(s) 61
SpeI ACTAGT 1 cut(s) 422
Sse9I AATT 6 cut(s) 142, 152, 200, 259, 481, 533
SsiI CCGC 5 cut(s) 9, 15, 24, 26, 112
SspI AATATT 1 cut(s) 296
SspMI CTAG 3 cut(s) 348, 423, 545
TaaI ACNGT 2 cut(s) 52, 431
TaqI TCGA 3 cut(s) 138, 174, 537
TasI AATT 6 cut(s) 142, 152, 200, 259, 481, 533
TatI WGTACW 2 cut(s) 221, 405
TauI GCSGC 2 cut(s) 26, 29
Tru1I TTAA 1 cut(s) 155
Tru9I TTAA 1 cut(s) 155
TscAI CASTG 1 cut(s) 57
TseI GCWGC 1 cut(s) 271
TspDTI ATGAA 4 cut(s) 83, 95, 153, 295
TspRI CASTG 1 cut(s) 57
VpaK11BI GGWCC 1 cut(s) 61
XapI RAATTY 3 cut(s) 259, 481, 533
XceI RCATGY 1 cut(s) 412
XmnI GAANNNNTTC 1 cut(s) 533
XspI CTAG 3 cut(s) 348, 423, 545
ZrmI AGTACT 1 cut(s) 223
Zsp2I ATGCAT 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.