pycom675g00050

spliceosomal complex assembly

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00000675
Physical Location & Seq
Reverse (-)
34663 .. 35019
357 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 357 bp
ATGCTATTTGGAGGCGACCTACCCACAGGCGAGGAGATTGGGGATCCACCTGGTACAGAGCTTATCCCAAGTTCGTCAAGTTTCCCAAGTTTGCCGTGTGTAGGTGGAGGCATGCAAGATCCCGTCATGCATTCTACACCTTTGCCAGCTAGCTCTGAGATCTCTCTGAGAGGGCCAAACCTTAGTGGTACTGAGCAGCTTATTCATCGCATCAATCTTCGTGCGGCAATGGATATCAAGAGCCATATTGAGGGGAGGATTTTGAAATGCCCGTCGGAGGACCTTGCGTTGCTTAAAGAGGACTTGTCGAAACTTATTCTGCAATTGACAATCTTAACATTGATTCTTCATCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

119

Amino Acids

12.59

Weight (kDa)

5.0

Isoelectric Point (pI)

73.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 224
AclWI GGATC 3 cut(s) 38, 51, 113
AfaI GTAC 2 cut(s) 55, 190
AfiI CCNNNNNNNGG 3 cut(s) 101, 250, 277
AgsI TTSAA 1 cut(s) 265
AjnI CCWGG 1 cut(s) 49
AluBI AGCT 4 cut(s) 61, 149, 153, 199
AluI AGCT 4 cut(s) 61, 149, 153, 199
AlwI GGATC 3 cut(s) 38, 51, 113
AoxI GGCC 1 cut(s) 173
ApeKI GCWGC 1 cut(s) 196
AspS9I GGNCC 2 cut(s) 173, 280
AsuNHI GCTAGC 1 cut(s) 149
AvaII GGWCC 1 cut(s) 280
BamHI GGATCC 1 cut(s) 43
BbvI GCAGC 1 cut(s) 208
BceAI ACGGC 1 cut(s) 79
BciT130I CCWGG 1 cut(s) 51
BfaI CTAG 1 cut(s) 150
BglII AGATCT 1 cut(s) 159
BisI GCNGC 2 cut(s) 197, 225
BlsI GCNGC 2 cut(s) 198, 226
Bme1390I CCNGG 1 cut(s) 51
Bme18I GGWCC 1 cut(s) 280
BmgT120I GGNCC 2 cut(s) 173, 280
BmiI GGNNCC 1 cut(s) 45
BmrFI CCNGG 1 cut(s) 51
BmsI GCATC 1 cut(s) 219
BmtI GCTAGC 1 cut(s) 153
Bsc4I CCNNNNNNNGG 3 cut(s) 101, 250, 277
Bse3DI GCAATG 1 cut(s) 234
BseBI CCWGG 1 cut(s) 51
BseGI GGATG 1 cut(s) 349
BseLI CCNNNNNNNGG 3 cut(s) 101, 250, 277
BseMI GCAATG 1 cut(s) 234
BseMII CTCAG 3 cut(s) 147, 158, 183
BseRI GAGGAG 1 cut(s) 47
BseXI GCAGC 1 cut(s) 208
BshFI GGCC 1 cut(s) 175
BslI CCNNNNNNNGG 3 cut(s) 101, 250, 277
BsmI GAATGC 1 cut(s) 130
BsnI GGCC 1 cut(s) 175
Bsp143I GATC 3 cut(s) 43, 118, 159
BspACI CCGC 1 cut(s) 224
BspANI GGCC 1 cut(s) 175
BspCNI CTCAG 3 cut(s) 148, 159, 184
BspLI GGNNCC 1 cut(s) 45
BspOI GCTAGC 1 cut(s) 153
BspPI GGATC 3 cut(s) 38, 51, 113
BsrDI GCAATG 1 cut(s) 234
BssMI GATC 3 cut(s) 43, 118, 159
Bst2UI CCWGG 1 cut(s) 51
BstC8I GCNNGC 3 cut(s) 113, 147, 151
BstDEI CTNAG 4 cut(s) 156, 167, 182, 192
BstF5I GGATG 1 cut(s) 349
BstKTI GATC 3 cut(s) 46, 121, 162
BstMBI GATC 3 cut(s) 43, 118, 159
BstNI CCWGG 1 cut(s) 51
BstNSI RCATGY 1 cut(s) 115
BstSCI CCNGG 1 cut(s) 49
BstV1I GCAGC 1 cut(s) 208
BstX2I RGATCY 3 cut(s) 43, 118, 159
BstYI RGATCY 3 cut(s) 43, 118, 159
BsuRI GGCC 1 cut(s) 175
BtgZI GCGATG 1 cut(s) 191
BtsCI GGATG 1 cut(s) 349
Cac8I GCNNGC 3 cut(s) 113, 147, 151
Cfr13I GGNCC 2 cut(s) 173, 280
CsiI ACCWGGT 1 cut(s) 49
Csp6I GTAC 2 cut(s) 54, 189
CviAII CATG 2 cut(s) 112, 127
CviJI RGCY 6 cut(s) 61, 149, 153, 175, 199, 243
CviKI_1 RGCY 6 cut(s) 61, 149, 153, 175, 199, 243
CviQI GTAC 2 cut(s) 54, 189
DdeI CTNAG 4 cut(s) 156, 167, 182, 192
DpnI GATC 3 cut(s) 45, 120, 161
DpnII GATC 3 cut(s) 43, 118, 159
Eco32I GATATC 1 cut(s) 235
Eco47I GGWCC 1 cut(s) 280
EcoO109I RGGNCCY 1 cut(s) 280
EcoRII CCWGG 1 cut(s) 49
EcoRV GATATC 1 cut(s) 235
EcoT22I ATGCAT 1 cut(s) 132
FaeI CATG 2 cut(s) 115, 130
FaiI YATR 3 cut(s) 113, 128, 246
FatI CATG 2 cut(s) 111, 126
Fnu4HI GCNGC 2 cut(s) 197, 225
FokI GGATG 1 cut(s) 336
Fsp4HI GCNGC 2 cut(s) 197, 225
FspBI CTAG 1 cut(s) 150
GluI GCNGC 2 cut(s) 197, 225
HaeIII GGCC 1 cut(s) 175
Hin1II CATG 2 cut(s) 115, 130
HinfI GANTC 1 cut(s) 343
Hpy188I TCNGA 3 cut(s) 157, 168, 277
Hpy188III TCNNGA 1 cut(s) 238
Hpy99I CGWCG 1 cut(s) 277
HpyCH4V TGCA 3 cut(s) 115, 130, 322
HpyF3I CTNAG 4 cut(s) 156, 167, 182, 192
Hsp92II CATG 2 cut(s) 115, 130
Kzo9I GATC 3 cut(s) 43, 118, 159
LpnPI CCDG 4 cut(s) 12, 36, 63, 159
Lsp1109I GCAGC 1 cut(s) 208
LweI GCATC 1 cut(s) 219
MabI ACCWGGT 1 cut(s) 49
MaeI CTAG 1 cut(s) 150
MalI GATC 3 cut(s) 45, 120, 161
MboI GATC 3 cut(s) 43, 118, 159
MboII GAAGA 2 cut(s) 209, 338
MfeI CAATTG 1 cut(s) 323
MflI RGATCY 3 cut(s) 43, 118, 159
MluCI AATT 1 cut(s) 323
MmeI TCCRAC 1 cut(s) 255
MnlI CCTC 8 cut(s) 5, 25, 101, 164, 244, 249, 271, 292
Mph1103I ATGCAT 1 cut(s) 132
MseI TTAA 2 cut(s) 294, 335
MspR9I CCNGG 1 cut(s) 51
MunI CAATTG 1 cut(s) 323
Mva1269I GAATGC 1 cut(s) 130
MvaI CCWGG 1 cut(s) 51
NdeII GATC 3 cut(s) 43, 118, 159
NheI GCTAGC 1 cut(s) 149
NlaIII CATG 2 cut(s) 115, 130
NlaIV GGNNCC 1 cut(s) 45
NsiI ATGCAT 1 cut(s) 132
NspI RCATGY 1 cut(s) 115
PaeI GCATGC 1 cut(s) 115
PctI GAATGC 1 cut(s) 130
PfeI GAWTC 1 cut(s) 343
PkrI GCNGC 2 cut(s) 198, 226
PpuMI RGGWCCY 1 cut(s) 280
Psp5II RGGWCCY 1 cut(s) 280
Psp6I CCWGG 1 cut(s) 49
PspGI CCWGG 1 cut(s) 49
PspN4I GGNNCC 1 cut(s) 45
PspPI GGNCC 2 cut(s) 173, 280
PspPPI RGGWCCY 1 cut(s) 280
PsuI RGATCY 3 cut(s) 43, 118, 159
RsaI GTAC 2 cut(s) 55, 190
RsaNI GTAC 2 cut(s) 54, 189
SaqAI TTAA 2 cut(s) 294, 335
SatI GCNGC 2 cut(s) 197, 225
Sau3AI GATC 3 cut(s) 43, 118, 159
Sau96I GGNCC 2 cut(s) 173, 280
ScrFI CCNGG 1 cut(s) 51
SexAI ACCWGGT 1 cut(s) 49
SfaNI GCATC 1 cut(s) 219
SinI GGWCC 1 cut(s) 280
SphI GCATGC 1 cut(s) 115
Sse9I AATT 1 cut(s) 323
SsiI CCGC 1 cut(s) 224
SspMI CTAG 1 cut(s) 150
StyD4I CCNGG 1 cut(s) 49
TaqI TCGA 1 cut(s) 308
TasI AATT 1 cut(s) 323
TauI GCSGC 1 cut(s) 227
TfiI GAWTC 1 cut(s) 343
Tru1I TTAA 2 cut(s) 294, 335
Tru9I TTAA 2 cut(s) 294, 335
TseI GCWGC 1 cut(s) 196
TspDTI ATGAA 2 cut(s) 194, 338
VpaK11BI GGWCC 1 cut(s) 280
XceI RCATGY 1 cut(s) 115
XspI CTAG 1 cut(s) 150
Zsp2I ATGCAT 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.