FvH4_6g44062

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000114
Physical Location & Seq
Reverse (-)
33980236 .. 33980733
498 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g44062.t1

Sequence Viewer

Length: 498 bp
ATGCTCAGTGGTGATGGAAATCTCGTAGTCTTGGATGAGACTAGAAAAGTTATCTGGTCAACTAATGCATCAATATCTGCTTCTGTAATGAGTAACACAACTGCTTTACTCTCGGATACCGGGAACCTTGTTTTGAGCTTTGGAAATCATACCTTATGGGAAAGCTTCGATTATCCCACTGATACTTGGGTGCCTAGCATGAAGATTGGCTTTAACAAAAGGACTGGCCAGCAATGGCTTCTTACATCCTGGGAAGCATCTGATGATCCACAACCCGGAAAGTTCACAAGCGGCATTGATCCTAAAGTACCTTCACAGCTTCTTGCTTGGAAGGAAAATGTTCCTTATTGGAGAAGTGCTATCTATGGCGACATTGGAGATTCAACAGTATATACAGGTCCAGGTGGACAATTCTTCCCTATCGATGATAGATCCTTCTTTTATTTTGCTTACAGCAATCATGATGAACAGGTTTTTCTCACTTTTGGTGTCGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

166

Amino Acids

18.37

Weight (kDa)

4.48

Isoelectric Point (pI)

28.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 2 - 84 1.6e-25 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000114)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_4g01160 FvH4_6g34940 FvH4_6g44062 FvH4_6g44106 FvH4_6g44106 FvH4_6g44106 FvH4_6g44107 FvH4_6g44107 FvH4_6g44109 FvH4_6g44140 FvH4_6g44190 FvH4_6g44200 FvH4_6g44240 FvH4_6g44241 FvH4_6g44242
malus_domestica MD09G1094900.v1.1 MD09G1100300.v1.1 MD09G1100400.v1.1 MD09G1100600.v1.1 MD09G1100800.v1.1 MD09G1100900.v1.1 MD09G1101300.v1.1 MD09G1255200.v1.1 MD17G1088400.v1.1 MD17G1088600.v1.1 MD17G1247900.v1.1 MD17G1248300.v1.1
prunus_persica Prupe.1G497000_v2.0.a1 Prupe.2G033300_v2.0.a1 Prupe.3G145500_v2.0.a1 Prupe.3G225400_v2.0.a1 Prupe.3G225700_v2.0.a1 Prupe.3G225700_v2.0.a1
pyrus_communis pycom06g12720 pycom06g12740 pycom09g01960 pycom09g02450 pycom17g08520 pycom17g08530 pycom17g08560 pycom17g24950 pycom17g25030 pycom17g25110 pycom17g25260 pycom17g25290
rosa_chinensis RchiOBHm_Chr1g0326521 RchiOBHm_Chr1g0326551 RchiOBHm_Chr1g0326591 RchiOBHm_Chr1g0328741 RchiOBHm_Chr1g0329371 RchiOBHm_Chr2g0145911 RchiOBHm_Chr2g0160891 RchiOBHm_Chr2g0160921 RchiOBHm_Chr2g0161001 RchiOBHm_Chr2g0161011 RchiOBHm_Chr2g0161431 RchiOBHm_Chr2g0165121 RchiOBHm_Chr2g0166301 RchiOBHm_Chr4g0399551 RchiOBHm_Chr4g0405681 RchiOBHm_Chr5g0066741 RchiOBHm_Chr5g0066841 RchiOBHm_Chr6g0273021 RchiOBHm_Chr7g0225151
rosa_laevigata RLG00000001843 RLG00000008827 RLG00000014283 RLG00000014284 RLG00000020173 RLG00000021244 RLG00000021246 RLG00000021248 RLG00000021283 RLG00000023606 RLG00000029921 RLG00000030066 RLG00000030067 RLG00000033456
rosa_multiflora Rmu_co7958161.1_g000001 Rmu_co8440151.1_g000001 Rmu_co8454989.1_g000001 Rmu_sc0000129.1_g000018 Rmu_sc0000322.1_g000011 Rmu_sc0000322.1_g000045 Rmu_sc0000605.1_g000051 Rmu_sc0000955.1_g000015 Rmu_sc0000955.1_g000020 Rmu_sc0001188.1_g000017 Rmu_sc0001188.1_g000019 Rmu_sc0001355.1_g000015 Rmu_sc0001702.1_g000005 Rmu_sc0001702.1_g000006 Rmu_sc0001702.1_g000007 Rmu_sc0001702.1_g000008 Rmu_sc0001702.1_g000009 Rmu_sc0001702.1_g000010 Rmu_sc0001702.1_g000011 Rmu_sc0001702.1_g000012 Rmu_sc0001702.1_g000013 Rmu_sc0001702.1_g000014 Rmu_sc0001702.1_g000015 Rmu_sc0001702.1_g000016 Rmu_sc0002473.1_g000012 Rmu_sc0002473.1_g000015 Rmu_sc0002773.1_g000029 Rmu_sc0004178.1_g000002 Rmu_sc0005189.1_g000006 Rmu_sc0005860.1_g000004 Rmu_sc0009205.1_g000005 Rmu_sc0009205.1_g000007 Rmu_sc0009205.1_g000023 Rmu_sc0009472.1_g000005 Rmu_sc0009858.1_g000015 Rmu_sc0020187.1_g000001
rosa_roxburghii Rroxscaffold_176G00431460 Rroxscaffold_176G00431480 Rroxscaffold_1G00014330 Rroxscaffold_1G00031590 Rroxscaffold_2G00088820 Rroxscaffold_2G00089330 Rroxscaffold_2G00089360 Rroxscaffold_2G00089370 Rroxscaffold_2G00089380 Rroxscaffold_2G00100370 Rroxscaffold_2G00100380 Rroxscaffold_4G00321410 Rroxscaffold_4G00323700 Rroxscaffold_4G00327640 Rroxscaffold_4G00327650 Rroxscaffold_5G00344450 Rroxscaffold_7G00202770 Rroxscaffold_7G00203450 Rroxscaffold_7G00203540
rosa_rugosa Rorug01G0061100 Rorug02G0482100 Rorug02G0485900 Rorug02G0485900 Rorug02G0489500 Rorug02G0489600 Rorug02G0489700 Rorug04G0016600 Rorug04G0016700 Rorug05G0379000 Rorug05G0516700 Rorug06G0007900 Rorug06G0009300
rosa_samantha Rh1AG076700 Rh1AG076800 Rh1AG077000 Rh1AG077300 Rh1AG094400 Rh1AG097500 Rh1AG402000 Rh1BG062700 Rh1BG062900 Rh1CG075500 Rh1CG075600 Rh1CG075800 Rh1CG090900 Rh1CG091400 Rh1CG091600 Rh1CG094100 Rh1DG082300 Rh1DG082500 Rh1DG097400 Rh2AG448200 Rh2AG448300 Rh2AG511600 Rh2AG547500 Rh2AG551400 Rh2AG551700 Rh2AG555800 Rh2AG588000 Rh2BG565900 Rh2BG566000 Rh2BG566300 Rh2BG569000 Rh2BG600000 Rh2CG435200 Rh2CG435300 Rh2CG496600 Rh2CG535400 Rh2CG535600 Rh2CG539700 Rh2CG562700 Rh2CG570900 Rh2DG574600 Rh2DG574800 Rh2DG578600 Rh2DG610200 Rh4CG140900 Rh4DG127800 Rh5AG438500 Rh5BG436500 Rh5BG455500 Rh5CG477600 Rh5DG470300 Rh6AG129500 Rh6AG129900 Rh6BG125700 Rh6BG126000 Rh6BG126700 Rh6BG126800 Rh6CG124500 Rh6CG124800 Rh6CG125200 Rh6CG125300 Rh6DG111400 Rh6DG111700 Rh6DG111800 Rh7DG373300
rosa_wichuraiana Rw0G014010 Rw1G006140 Rw1G006160 Rw1G006180 Rw1G006190 Rw1G007340 Rw1G007360 Rw2G045660 Rw2G045670 Rw2G045970 Rw2G048220 Rw4G010820 Rw5G041010 Rw6G011220 Rw6G011230 Rw7G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 190
AciI CCGC 1 cut(s) 291
AclWI GGATC 3 cut(s) 260, 293, 426
AcoI YGGCCR 1 cut(s) 226
AfaI GTAC 1 cut(s) 309
AfiI CCNNNNNNNGG 1 cut(s) 275
AgsI TTSAA 1 cut(s) 384
AjnI CCWGG 2 cut(s) 248, 400
AluBI AGCT 3 cut(s) 138, 165, 319
AluI AGCT 3 cut(s) 138, 165, 319
Alw26I GTCTC 1 cut(s) 32
AlwI GGATC 3 cut(s) 260, 293, 426
AoxI GGCC 1 cut(s) 226
Asp700I GAANNNNTTC 1 cut(s) 339
AspS9I GGNCC 1 cut(s) 398
AsuC2I CCSGG 2 cut(s) 121, 276
AsuHPI GGTGA 1 cut(s) 23
AvaII GGWCC 1 cut(s) 398
BaeI ACNNNNGTAYC 2 cut(s) 174, 207
BalI TGGCCA 1 cut(s) 228
BanI GGYRCC 1 cut(s) 190
BccI CCATC 1 cut(s) 8
BciT130I CCWGG 2 cut(s) 250, 402
BciVI GTATCC 1 cut(s) 109
BcnI CCSGG 2 cut(s) 121, 276
BcoDI GTCTC 1 cut(s) 32
BfaI CTAG 2 cut(s) 42, 195
BfuI GTATCC 1 cut(s) 109
BisI GCNGC 1 cut(s) 292
BlsI GCNGC 1 cut(s) 293
Bme1390I CCNGG 4 cut(s) 121, 250, 276, 402
Bme18I GGWCC 1 cut(s) 398
BmgT120I GGNCC 1 cut(s) 398
BmiI GGNNCC 2 cut(s) 125, 192
BmrFI CCNGG 4 cut(s) 121, 250, 276, 402
BmsI GCATC 2 cut(s) 77, 266
BpuMI CCSGG 2 cut(s) 121, 276
Bsa29I ATCGAT 1 cut(s) 423
BsaBI GATNNNNATC 1 cut(s) 18
BsaJI CCNNGG 1 cut(s) 249
Bsc4I CCNNNNNNNGG 1 cut(s) 275
Bse1I ACTGG 1 cut(s) 229
Bse3DI GCAATG 1 cut(s) 239
Bse8I GATNNNNATC 1 cut(s) 18
BseBI CCWGG 2 cut(s) 250, 402
BseCI ATCGAT 1 cut(s) 423
BseDI CCNNGG 1 cut(s) 249
BseGI GGATG 2 cut(s) 40, 245
BseJI GATNNNNATC 1 cut(s) 18
BseLI CCNNNNNNNGG 1 cut(s) 275
BseMI GCAATG 1 cut(s) 239
BseMII CTCAG 1 cut(s) 19
BseNI ACTGG 1 cut(s) 229
BshFI GGCC 1 cut(s) 228
BshNI GGYRCC 1 cut(s) 190
BshVI ATCGAT 1 cut(s) 423
BsiSI CCGG 2 cut(s) 120, 276
BslI CCNNNNNNNGG 1 cut(s) 275
BsmAI GTCTC 1 cut(s) 32
BsnI GGCC 1 cut(s) 228
Bsp143I GATC 3 cut(s) 265, 298, 431
BspACI CCGC 1 cut(s) 291
BspANI GGCC 1 cut(s) 228
BspCNI CTCAG 1 cut(s) 18
BspDI ATCGAT 1 cut(s) 423
BspHI TCATGA 1 cut(s) 460
BspLI GGNNCC 2 cut(s) 125, 192
BspPI GGATC 3 cut(s) 260, 293, 426
BspT107I GGYRCC 1 cut(s) 190
BsrDI GCAATG 1 cut(s) 239
BsrI ACTGG 1 cut(s) 229
BssECI CCNNGG 1 cut(s) 249
BssMI GATC 3 cut(s) 265, 298, 431
Bst2UI CCWGG 2 cut(s) 250, 402
Bst4CI ACNGT 1 cut(s) 388
BstC8I GCNNGC 1 cut(s) 230
BstDEI CTNAG 1 cut(s) 5
BstF5I GGATG 2 cut(s) 40, 245
BstKTI GATC 3 cut(s) 268, 301, 434
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 3 cut(s) 265, 298, 431
BstNI CCWGG 2 cut(s) 250, 402
BstSCI CCNGG 4 cut(s) 119, 248, 274, 400
BstX2I RGATCY 1 cut(s) 431
BstYI RGATCY 1 cut(s) 431
Bsu15I ATCGAT 1 cut(s) 423
BsuI GTATCC 1 cut(s) 109
BsuRI GGCC 1 cut(s) 228
BsuTUI ATCGAT 1 cut(s) 423
BtsCI GGATG 2 cut(s) 40, 245
BtsIMutI CAGTG 2 cut(s) 13, 177
Cac8I GCNNGC 1 cut(s) 230
CciI TCATGA 1 cut(s) 460
Cfr13I GGNCC 1 cut(s) 398
ClaI ATCGAT 1 cut(s) 423
Csp6I GTAC 1 cut(s) 308
CviAII CATG 2 cut(s) 199, 461
CviJI RGCY 6 cut(s) 138, 165, 210, 228, 238, 319
CviKI_1 RGCY 6 cut(s) 138, 165, 210, 228, 238, 319
CviQI GTAC 1 cut(s) 308
DdeI CTNAG 1 cut(s) 5
DpnI GATC 3 cut(s) 267, 300, 433
DpnII GATC 3 cut(s) 265, 298, 431
EaeI YGGCCR 1 cut(s) 226
Eco47I GGWCC 1 cut(s) 398
EcoRII CCWGG 2 cut(s) 248, 400
EcoT22I ATGCAT 1 cut(s) 70
FaeI CATG 2 cut(s) 202, 464
FaiI YATR 7 cut(s) 150, 157, 200, 366, 391, 393, 462
FalI AAGNNNNNCTT 2 cut(s) 194, 226
FatI CATG 2 cut(s) 198, 460
Fnu4HI GCNGC 1 cut(s) 292
FokI GGATG 2 cut(s) 47, 232
Fsp4HI GCNGC 1 cut(s) 292
FspBI CTAG 2 cut(s) 42, 195
GluI GCNGC 1 cut(s) 292
HaeIII GGCC 1 cut(s) 228
HapII CCGG 2 cut(s) 120, 276
Hin1II CATG 2 cut(s) 202, 464
HincII GTYRAC 1 cut(s) 60
HindII GTYRAC 1 cut(s) 60
HindIII AAGCTT 1 cut(s) 163
HinfI GANTC 1 cut(s) 380
HpaII CCGG 2 cut(s) 120, 276
HphI GGTGA 1 cut(s) 23
Hpy166II GTNNAC 3 cut(s) 60, 285, 407
Hpy188I TCNGA 3 cut(s) 115, 262, 494
Hpy188III TCNNGA 1 cut(s) 461
Hpy8I GTNNAC 3 cut(s) 60, 285, 407
HpyAV CCTTC 3 cut(s) 321, 325, 445
HpyCH4III ACNGT 1 cut(s) 388
HpyCH4V TGCA 1 cut(s) 68
HpyF3I CTNAG 1 cut(s) 5
Hsp92II CATG 2 cut(s) 202, 464
Kzo9I GATC 3 cut(s) 265, 298, 431
LweI GCATC 2 cut(s) 77, 266
MaeI CTAG 2 cut(s) 42, 195
MaeIII GTNAC 1 cut(s) 92
MalI GATC 3 cut(s) 267, 300, 433
MboI GATC 3 cut(s) 265, 298, 431
MboII GAAGA 2 cut(s) 214, 406
MflI RGATCY 1 cut(s) 431
MlsI TGGCCA 1 cut(s) 228
MluCI AATT 1 cut(s) 410
MluNI TGGCCA 1 cut(s) 228
MmeI TCCRAC 1 cut(s) 472
Mox20I TGGCCA 1 cut(s) 228
Mph1103I ATGCAT 1 cut(s) 70
MroXI GAANNNNTTC 1 cut(s) 339
MscI TGGCCA 1 cut(s) 228
MseI TTAA 1 cut(s) 213
Msp20I TGGCCA 1 cut(s) 228
MspI CCGG 2 cut(s) 120, 276
MspR9I CCNGG 4 cut(s) 121, 250, 276, 402
MvaI CCWGG 2 cut(s) 250, 402
NciI CCSGG 2 cut(s) 121, 276
NdeII GATC 3 cut(s) 265, 298, 431
NlaIII CATG 2 cut(s) 202, 464
NlaIV GGNNCC 2 cut(s) 125, 192
NsiI ATGCAT 1 cut(s) 70
PagI TCATGA 1 cut(s) 460
PdmI GAANNNNTTC 1 cut(s) 339
PfeI GAWTC 1 cut(s) 380
PkrI GCNGC 1 cut(s) 293
Psp6I CCWGG 2 cut(s) 248, 400
PspGI CCWGG 2 cut(s) 248, 400
PspN4I GGNNCC 2 cut(s) 125, 192
PspPI GGNCC 1 cut(s) 398
PsuI RGATCY 1 cut(s) 431
RsaI GTAC 1 cut(s) 309
RsaNI GTAC 1 cut(s) 308
SaqAI TTAA 1 cut(s) 213
SatI GCNGC 1 cut(s) 292
Sau3AI GATC 3 cut(s) 265, 298, 431
Sau96I GGNCC 1 cut(s) 398
ScrFI CCNGG 4 cut(s) 121, 250, 276, 402
SetI ASST 9 cut(s) 129, 140, 155, 167, 313, 321, 400, 406, 474
SfaNI GCATC 2 cut(s) 77, 266
SinI GGWCC 1 cut(s) 398
Sse9I AATT 1 cut(s) 410
SsiI CCGC 1 cut(s) 291
SspMI CTAG 2 cut(s) 42, 195
StyD4I CCNGG 4 cut(s) 119, 248, 274, 400
TaaI ACNGT 1 cut(s) 388
TaqI TCGA 2 cut(s) 168, 423
TasI AATT 1 cut(s) 410
TauI GCSGC 1 cut(s) 294
TfiI GAWTC 1 cut(s) 380
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TscAI CASTG 2 cut(s) 13, 184
TspDTI ATGAA 2 cut(s) 215, 480
TspRI CASTG 2 cut(s) 13, 184
VpaK11BI GGWCC 1 cut(s) 398
XmnI GAANNNNTTC 1 cut(s) 339
XspI CTAG 2 cut(s) 42, 195
Zsp2I ATGCAT 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.