MD09G1100800.v1.1

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0000114
Physical Location & Seq
Forward (+)
7364737 .. 7365687
951 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1100800.v1.1.491

Sequence Viewer

Length: 951 bp
ATGAATACTGGTGACCTTCAAGTGATGTCTGGAGAAGACATTTTGTGGCGGAGCTTTGATCATCCTTCCGACACATTGTTGCCCGGCCAGAGGCTTAGCCGGAACAAAATAACAGGCCAACAAGTGCGTCTGACATCGTGGGCAACACTAGCTGATCCAAAACCTGGAATATTTAGCGTAGGCATCGATCCAAAAGTTCCCAGGCAGCTAATTACCTGGAAGGGAAATGCTACATATTGGAAAAGTTCTGTTTACTTCAGTAAGGATGTAAACACATACTTTAGAAATCAAAGTGGGGGCTTTTTTTACATTGCTTACAGTTTTGATGCTGATGGTATTTATTTTACTTTTGGTGCGTCGGATAACTCCATAAAACTGAGGGCCGTTTTGAGTCCATCAGGCAAGCTTAATCTGCTGCTCTGGATTGATGAAAATGAGACATGGATTGAAGAGTGGGCAGAGCCTACCAATAAATGTGACTTTTATGCTCGATGCGGTCCATATGGTGCCTGTGATAAAACCGGTGATCCATTCTCGTCACAATGCAAGTGTTTGAAGGGTTTCAGGACCCAATTTAAGAAACAATGGGCTATGGAGGACTGGCCCGGTGGTTGTGTTCGGGAAAAGGCATTGGTATGTGATAAAGGCGAAGTGTTTTCAATGTTTGAGAATATGAAACTACCAGATGATGCTATAATTTTTGGAAATAGGAATATGAGTGAATGTGAATCTGAATGCCTTCAGAACTGCTCTTGCACAGCTTATGCCTATTCAAAGGTGATAGAAAAAGGTGGTCTAGGATGCTTGACATGGTCTGGTAACTTGACGGATCTTGTCGAGAATCATCGTTTTGGGCAAACCATGTATATTCGTGTTCACCGCTCTGATCAAGGTATGTTTGTTTGGTTTCTTTTTCTATTTTCTGTGTATGTATTTGGCGTGCTAGGATAG

Protein Analysis

317

Amino Acids

35.89

Weight (kDa)

6.0

Isoelectric Point (pI)

40.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 2 - 47 4.8e-11 D-mannose binding lectin
S_locus_glycop PF00954 104 - 191 2.5e-20 S-locus glycoprotein domain
PAN_2 PF08276 213 - 278 1.7e-17 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000114)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_4g01160 FvH4_6g34940 FvH4_6g44062 FvH4_6g44106 FvH4_6g44106 FvH4_6g44106 FvH4_6g44107 FvH4_6g44107 FvH4_6g44109 FvH4_6g44140 FvH4_6g44190 FvH4_6g44200 FvH4_6g44240 FvH4_6g44241 FvH4_6g44242
malus_domestica MD09G1094900.v1.1 MD09G1100300.v1.1 MD09G1100400.v1.1 MD09G1100600.v1.1 MD09G1100800.v1.1 MD09G1100900.v1.1 MD09G1101300.v1.1 MD09G1255200.v1.1 MD17G1088400.v1.1 MD17G1088600.v1.1 MD17G1247900.v1.1 MD17G1248300.v1.1
prunus_persica Prupe.1G497000_v2.0.a1 Prupe.2G033300_v2.0.a1 Prupe.3G145500_v2.0.a1 Prupe.3G225400_v2.0.a1 Prupe.3G225700_v2.0.a1 Prupe.3G225700_v2.0.a1
pyrus_communis pycom06g12720 pycom06g12740 pycom09g01960 pycom09g02450 pycom17g08520 pycom17g08530 pycom17g08560 pycom17g24950 pycom17g25030 pycom17g25110 pycom17g25260 pycom17g25290
rosa_chinensis RchiOBHm_Chr1g0326521 RchiOBHm_Chr1g0326551 RchiOBHm_Chr1g0326591 RchiOBHm_Chr1g0328741 RchiOBHm_Chr1g0329371 RchiOBHm_Chr2g0145911 RchiOBHm_Chr2g0160891 RchiOBHm_Chr2g0160921 RchiOBHm_Chr2g0161001 RchiOBHm_Chr2g0161011 RchiOBHm_Chr2g0161431 RchiOBHm_Chr2g0165121 RchiOBHm_Chr2g0166301 RchiOBHm_Chr4g0399551 RchiOBHm_Chr4g0405681 RchiOBHm_Chr5g0066741 RchiOBHm_Chr5g0066841 RchiOBHm_Chr6g0273021 RchiOBHm_Chr7g0225151
rosa_laevigata RLG00000001843 RLG00000008827 RLG00000014283 RLG00000014284 RLG00000020173 RLG00000021244 RLG00000021246 RLG00000021248 RLG00000021283 RLG00000023606 RLG00000029921 RLG00000030066 RLG00000030067 RLG00000033456
rosa_multiflora Rmu_co7958161.1_g000001 Rmu_co8440151.1_g000001 Rmu_co8454989.1_g000001 Rmu_sc0000129.1_g000018 Rmu_sc0000322.1_g000011 Rmu_sc0000322.1_g000045 Rmu_sc0000605.1_g000051 Rmu_sc0000955.1_g000015 Rmu_sc0000955.1_g000020 Rmu_sc0001188.1_g000017 Rmu_sc0001188.1_g000019 Rmu_sc0001355.1_g000015 Rmu_sc0001702.1_g000005 Rmu_sc0001702.1_g000006 Rmu_sc0001702.1_g000007 Rmu_sc0001702.1_g000008 Rmu_sc0001702.1_g000009 Rmu_sc0001702.1_g000010 Rmu_sc0001702.1_g000011 Rmu_sc0001702.1_g000012 Rmu_sc0001702.1_g000013 Rmu_sc0001702.1_g000014 Rmu_sc0001702.1_g000015 Rmu_sc0001702.1_g000016 Rmu_sc0002473.1_g000012 Rmu_sc0002473.1_g000015 Rmu_sc0002773.1_g000029 Rmu_sc0004178.1_g000002 Rmu_sc0005189.1_g000006 Rmu_sc0005860.1_g000004 Rmu_sc0009205.1_g000005 Rmu_sc0009205.1_g000007 Rmu_sc0009205.1_g000023 Rmu_sc0009472.1_g000005 Rmu_sc0009858.1_g000015 Rmu_sc0020187.1_g000001
rosa_roxburghii Rroxscaffold_176G00431460 Rroxscaffold_176G00431480 Rroxscaffold_1G00014330 Rroxscaffold_1G00031590 Rroxscaffold_2G00088820 Rroxscaffold_2G00089330 Rroxscaffold_2G00089360 Rroxscaffold_2G00089370 Rroxscaffold_2G00089380 Rroxscaffold_2G00100370 Rroxscaffold_2G00100380 Rroxscaffold_4G00321410 Rroxscaffold_4G00323700 Rroxscaffold_4G00327640 Rroxscaffold_4G00327650 Rroxscaffold_5G00344450 Rroxscaffold_7G00202770 Rroxscaffold_7G00203450 Rroxscaffold_7G00203540
rosa_rugosa Rorug01G0061100 Rorug02G0482100 Rorug02G0485900 Rorug02G0485900 Rorug02G0489500 Rorug02G0489600 Rorug02G0489700 Rorug04G0016600 Rorug04G0016700 Rorug05G0379000 Rorug05G0516700 Rorug06G0007900 Rorug06G0009300
rosa_samantha Rh1AG076700 Rh1AG076800 Rh1AG077000 Rh1AG077300 Rh1AG094400 Rh1AG097500 Rh1AG402000 Rh1BG062700 Rh1BG062900 Rh1CG075500 Rh1CG075600 Rh1CG075800 Rh1CG090900 Rh1CG091400 Rh1CG091600 Rh1CG094100 Rh1DG082300 Rh1DG082500 Rh1DG097400 Rh2AG448200 Rh2AG448300 Rh2AG511600 Rh2AG547500 Rh2AG551400 Rh2AG551700 Rh2AG555800 Rh2AG588000 Rh2BG565900 Rh2BG566000 Rh2BG566300 Rh2BG569000 Rh2BG600000 Rh2CG435200 Rh2CG435300 Rh2CG496600 Rh2CG535400 Rh2CG535600 Rh2CG539700 Rh2CG562700 Rh2CG570900 Rh2DG574600 Rh2DG574800 Rh2DG578600 Rh2DG610200 Rh4CG140900 Rh4DG127800 Rh5AG438500 Rh5BG436500 Rh5BG455500 Rh5CG477600 Rh5DG470300 Rh6AG129500 Rh6AG129900 Rh6BG125700 Rh6BG126000 Rh6BG126700 Rh6BG126800 Rh6CG124500 Rh6CG124800 Rh6CG125200 Rh6CG125300 Rh6DG111400 Rh6DG111700 Rh6DG111800 Rh7DG373300
rosa_wichuraiana Rw0G014010 Rw1G006140 Rw1G006160 Rw1G006180 Rw1G006190 Rw1G007340 Rw1G007360 Rw2G045660 Rw2G045670 Rw2G045970 Rw2G048220 Rw4G010820 Rw5G041010 Rw6G011220 Rw6G011230 Rw7G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 506
AccB7I CCANNNNNTGG 1 cut(s) 164
AccBSI CCGCTC 1 cut(s) 882
AciI CCGC 3 cut(s) 49, 495, 880
AclWI GGATC 4 cut(s) 149, 182, 521, 837
AcoI YGGCCR 1 cut(s) 85
AcuI CTGAAG 2 cut(s) 241, 725
AfiI CCNNNNNNNGG 2 cut(s) 90, 164
AgeI ACCGGT 1 cut(s) 521
AgsI TTSAA 5 cut(s) 20, 449, 556, 660, 774
AjnI CCWGG 3 cut(s) 163, 200, 215
AluBI AGCT 5 cut(s) 54, 152, 208, 406, 761
AluI AGCT 5 cut(s) 54, 152, 208, 406, 761
Alw26I GTCTC 1 cut(s) 431
AlwI GGATC 4 cut(s) 149, 182, 521, 837
AoxI GGCC 4 cut(s) 85, 115, 381, 602
ApeKI GCWGC 2 cut(s) 205, 415
AsiGI ACCGGT 1 cut(s) 521
Asp700I GAANNNNTTC 2 cut(s) 560, 738
AspS9I GGNCC 4 cut(s) 381, 497, 567, 603
AsuC2I CCSGG 2 cut(s) 84, 606
AsuHPI GGTGA 4 cut(s) 23, 536, 790, 869
AvaII GGWCC 2 cut(s) 497, 567
BanI GGYRCC 1 cut(s) 506
BbsI GAAGAC 1 cut(s) 42
BbvI GCAGC 2 cut(s) 217, 402
BccI CCATC 2 cut(s) 326, 403
BceAI ACGGC 1 cut(s) 368
BciT130I CCWGG 3 cut(s) 165, 202, 217
BclI TGATCA 2 cut(s) 58, 886
BcnI CCSGG 2 cut(s) 84, 606
BcoDI GTCTC 1 cut(s) 431
BfaI CTAG 3 cut(s) 149, 797, 944
BisI GCNGC 2 cut(s) 206, 416
BlpI GCTNAGC 1 cut(s) 95
BlsI GCNGC 2 cut(s) 207, 417
Bme1390I CCNGG 5 cut(s) 84, 165, 202, 217, 606
Bme18I GGWCC 2 cut(s) 497, 567
BmgT120I GGNCC 4 cut(s) 381, 497, 567, 603
BmiI GGNNCC 2 cut(s) 508, 569
BmrFI CCNGG 5 cut(s) 84, 165, 202, 217, 606
BmsI GCATC 5 cut(s) 192, 316, 482, 679, 791
BpiI GAAGAC 1 cut(s) 42
BpmI CTGGAG 1 cut(s) 51
Bpu1102I GCTNAGC 1 cut(s) 95
BpuMI CCSGG 2 cut(s) 84, 606
Bsa29I ATCGAT 1 cut(s) 186
BsaJI CCNNGG 1 cut(s) 200
BsaWI WCCGGW 1 cut(s) 521
Bsc4I CCNNNNNNNGG 2 cut(s) 90, 164
Bse118I RCCGGY 1 cut(s) 521
Bse1I ACTGG 2 cut(s) 13, 605
Bse3DI GCAATG 1 cut(s) 309
BseBI CCWGG 3 cut(s) 165, 202, 217
BseCI ATCGAT 1 cut(s) 186
BseDI CCNNGG 1 cut(s) 200
BseGI GGATG 3 cut(s) 61, 271, 806
BseLI CCNNNNNNNGG 2 cut(s) 90, 164
BseMI GCAATG 1 cut(s) 309
BseMII CTCAG 1 cut(s) 368
BseNI ACTGG 2 cut(s) 13, 605
BseXI GCAGC 2 cut(s) 217, 402
BshFI GGCC 4 cut(s) 87, 117, 383, 604
BshNI GGYRCC 1 cut(s) 506
BshTI ACCGGT 1 cut(s) 521
BshVI ATCGAT 1 cut(s) 186
BsiSI CCGG 4 cut(s) 84, 100, 522, 606
BslI CCNNNNNNNGG 2 cut(s) 90, 164
BsmAI GTCTC 1 cut(s) 431
BsmI GAATGC 1 cut(s) 740
BsnI GGCC 4 cut(s) 87, 117, 383, 604
Bsp143I GATC 6 cut(s) 58, 154, 187, 526, 829, 886
Bsp1720I GCTNAGC 1 cut(s) 95
BspACI CCGC 3 cut(s) 49, 495, 880
BspANI GGCC 4 cut(s) 87, 117, 383, 604
BspCNI CTCAG 1 cut(s) 369
BspDI ATCGAT 1 cut(s) 186
BspLI GGNNCC 2 cut(s) 508, 569
BspPI GGATC 4 cut(s) 149, 182, 521, 837
BspT107I GGYRCC 1 cut(s) 506
BsrBI CCGCTC 1 cut(s) 882
BsrDI GCAATG 1 cut(s) 309
BsrFI RCCGGY 1 cut(s) 521
BsrI ACTGG 2 cut(s) 13, 605
BssAI RCCGGY 1 cut(s) 521
BssECI CCNNGG 1 cut(s) 200
BssMI GATC 6 cut(s) 58, 154, 187, 526, 829, 886
Bst2UI CCWGG 3 cut(s) 165, 202, 217
Bst4CI ACNGT 1 cut(s) 320
Bst6I CTCTTC 1 cut(s) 444
BstC8I GCNNGC 2 cut(s) 404, 941
BstDEI CTNAG 2 cut(s) 95, 377
BstEII GGTNACC 1 cut(s) 11
BstF5I GGATG 3 cut(s) 61, 271, 806
BstKTI GATC 6 cut(s) 61, 157, 190, 529, 832, 889
BstMAI GTCTC 1 cut(s) 431
BstMBI GATC 6 cut(s) 58, 154, 187, 526, 829, 886
BstMWI GCNNNNNNNGC 2 cut(s) 149, 412
BstNI CCWGG 3 cut(s) 165, 202, 217
BstPI GGTNACC 1 cut(s) 11
BstSCI CCNGG 5 cut(s) 82, 163, 200, 215, 604
BstV1I GCAGC 2 cut(s) 217, 402
BstV2I GAAGAC 1 cut(s) 42
BstX2I RGATCY 1 cut(s) 829
BstYI RGATCY 1 cut(s) 829
Bsu15I ATCGAT 1 cut(s) 186
BsuRI GGCC 4 cut(s) 87, 117, 383, 604
BsuTUI ATCGAT 1 cut(s) 186
BtsCI GGATG 3 cut(s) 61, 271, 806
Cac8I GCNNGC 2 cut(s) 404, 941
Cfr10I RCCGGY 1 cut(s) 521
Cfr13I GGNCC 4 cut(s) 381, 497, 567, 603
ClaI ATCGAT 1 cut(s) 186
CseI GACGC 2 cut(s) 116, 345
CspAI ACCGGT 1 cut(s) 521
CviAII CATG 3 cut(s) 441, 810, 862
DdeI CTNAG 2 cut(s) 95, 377
DpnI GATC 6 cut(s) 60, 156, 189, 528, 831, 888
DpnII GATC 6 cut(s) 58, 154, 187, 526, 829, 886
EaeI YGGCCR 1 cut(s) 85
Eam1104I CTCTTC 1 cut(s) 444
EarI CTCTTC 1 cut(s) 444
EciI GGCGGA 1 cut(s) 64
Eco47I GGWCC 2 cut(s) 497, 567
Eco57I CTGAAG 2 cut(s) 241, 725
Eco91I GGTNACC 1 cut(s) 11
EcoO109I RGGNCCY 1 cut(s) 567
EcoO65I GGTNACC 1 cut(s) 11
EcoRII CCWGG 3 cut(s) 163, 200, 215
FaeI CATG 3 cut(s) 444, 813, 865
FatI CATG 3 cut(s) 440, 809, 861
FauNDI CATATG 1 cut(s) 502
FbaI TGATCA 2 cut(s) 58, 886
Fnu4HI GCNGC 2 cut(s) 206, 416
FokI GGATG 3 cut(s) 48, 278, 813
Fsp4HI GCNGC 2 cut(s) 206, 416
FspBI CTAG 3 cut(s) 149, 797, 944
GluI GCNGC 2 cut(s) 206, 416
GsuI CTGGAG 1 cut(s) 51
HaeIII GGCC 4 cut(s) 87, 117, 383, 604
HapII CCGG 4 cut(s) 84, 100, 522, 606
HgaI GACGC 2 cut(s) 116, 345
Hin1II CATG 3 cut(s) 444, 813, 865
HindIII AAGCTT 1 cut(s) 404
HinfI GANTC 3 cut(s) 391, 728, 841
HpaII CCGG 4 cut(s) 84, 100, 522, 606
HphI GGTGA 4 cut(s) 23, 536, 790, 869
Hpy166II GTNNAC 3 cut(s) 253, 271, 877
Hpy188I TCNGA 6 cut(s) 70, 132, 361, 733, 744, 886
Hpy188III TCNNGA 5 cut(s) 30, 421, 565, 620, 838
Hpy8I GTNNAC 3 cut(s) 253, 271, 877
Hpy99I CGWCG 1 cut(s) 361
HpyAV CCTTC 5 cut(s) 26, 75, 214, 550, 749
HpyCH4III ACNGT 1 cut(s) 320
HpyCH4V TGCA 2 cut(s) 546, 756
HpyF10VI GCNNNNNNNGC 2 cut(s) 149, 412
HpyF3I CTNAG 2 cut(s) 95, 377
Hsp92II CATG 3 cut(s) 444, 813, 865
Ksp22I TGATCA 2 cut(s) 58, 886
Kzo9I GATC 6 cut(s) 58, 154, 187, 526, 829, 886
LmnI GCTCC 1 cut(s) 51
Lsp1109I GCAGC 2 cut(s) 217, 402
LweI GCATC 5 cut(s) 192, 316, 482, 679, 791
MaeI CTAG 3 cut(s) 149, 797, 944
MaeIII GTNAC 4 cut(s) 11, 476, 537, 818
MalI GATC 6 cut(s) 60, 156, 189, 528, 831, 888
MbiI CCGCTC 1 cut(s) 882
MboI GATC 6 cut(s) 58, 154, 187, 526, 829, 886
MboII GAAGA 2 cut(s) 47, 461
MflI RGATCY 1 cut(s) 829
MluCI AATT 3 cut(s) 210, 572, 696
MlyI GAGTC 1 cut(s) 400
MmeI TCCRAC 2 cut(s) 93, 339
MnlI CCTC 3 cut(s) 84, 372, 589
MroXI GAANNNNTTC 2 cut(s) 560, 738
MseI TTAA 2 cut(s) 408, 576
MslI CAYNNNNRTG 1 cut(s) 634
MspI CCGG 4 cut(s) 84, 100, 522, 606
MspR9I CCNGG 5 cut(s) 84, 165, 202, 217, 606
Mva1269I GAATGC 1 cut(s) 740
MvaI CCWGG 3 cut(s) 165, 202, 217
MwoI GCNNNNNNNGC 2 cut(s) 149, 412
NciI CCSGG 2 cut(s) 84, 606
NdeI CATATG 1 cut(s) 502
NdeII GATC 6 cut(s) 58, 154, 187, 526, 829, 886
NlaIII CATG 3 cut(s) 444, 813, 865
NlaIV GGNNCC 2 cut(s) 508, 569
NmuCI GTSAC 3 cut(s) 11, 476, 537
PctI GAATGC 1 cut(s) 740
PdmI GAANNNNTTC 2 cut(s) 560, 738
PfeI GAWTC 2 cut(s) 728, 841
PflFI GACNNNGTC 1 cut(s) 811
PflMI CCANNNNNTGG 1 cut(s) 164
PinAI ACCGGT 1 cut(s) 521
PkrI GCNGC 2 cut(s) 207, 417
PleI GAGTC 1 cut(s) 399
PpsI GAGTC 1 cut(s) 399
PpuMI RGGWCCY 1 cut(s) 567
Psp5II RGGWCCY 1 cut(s) 567
Psp6I CCWGG 3 cut(s) 163, 200, 215
PspEI GGTNACC 1 cut(s) 11
PspGI CCWGG 3 cut(s) 163, 200, 215
PspN4I GGNNCC 2 cut(s) 508, 569
PspPI GGNCC 4 cut(s) 381, 497, 567, 603
PspPPI RGGWCCY 1 cut(s) 567
PsuI RGATCY 1 cut(s) 829
PsyI GACNNNGTC 1 cut(s) 811
RseI CAYNNNNRTG 1 cut(s) 634
SaqAI TTAA 2 cut(s) 408, 576
SatI GCNGC 2 cut(s) 206, 416
Sau3AI GATC 6 cut(s) 58, 154, 187, 526, 829, 886
Sau96I GGNCC 4 cut(s) 381, 497, 567, 603
SchI GAGTC 1 cut(s) 400
ScrFI CCNGG 5 cut(s) 84, 165, 202, 217, 606
SfaNI GCATC 5 cut(s) 192, 316, 482, 679, 791
SinI GGWCC 2 cut(s) 497, 567
SmiMI CAYNNNNRTG 1 cut(s) 634
Sse9I AATT 3 cut(s) 210, 572, 696
SsiI CCGC 3 cut(s) 49, 495, 880
SspI AATATT 1 cut(s) 171
SspMI CTAG 3 cut(s) 149, 797, 944
StyD4I CCNGG 5 cut(s) 82, 163, 200, 215, 604
TaaI ACNGT 1 cut(s) 320
TaqI TCGA 3 cut(s) 186, 490, 837
TasI AATT 3 cut(s) 210, 572, 696
TfiI GAWTC 2 cut(s) 728, 841
Tru1I TTAA 2 cut(s) 408, 576
Tru9I TTAA 2 cut(s) 408, 576
TseFI GTSAC 3 cut(s) 11, 476, 537
TseI GCWGC 2 cut(s) 205, 415
Tsp45I GTSAC 3 cut(s) 11, 476, 537
TspDTI ATGAA 3 cut(s) 17, 444, 689
TspGWI ACGGA 1 cut(s) 842
Tth111I GACNNNGTC 1 cut(s) 811
Van91I CCANNNNNTGG 1 cut(s) 164
VpaK11BI GGWCC 2 cut(s) 497, 567
XmnI GAANNNNTTC 2 cut(s) 560, 738
XspI CTAG 3 cut(s) 149, 797, 944
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.