RchiOBHm_Chr5g0066741

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000114
Physical Location & Seq
Reverse (-)
72801194 .. 72803012
1819 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34249

Sequence Viewer

Length: 996 bp
ATGAAGGAAGAATTCCTCTCTTTCGGAAGCCAAGGTATTGCTCTCACTCTCATCTATTCTAGCTCCAAACTTACAATGCTTCTAAGTTCTGAAAGTAACATTGATATACACAGGGAGTATAGAGAGATTATAAGGAATGTTATTGCTGGAGGTGCACAGAATGAAACAGAACTACCAATCTTTAGTTTAAGGAGTATATTAGCTACTACAAGCAATTTCTCTCAAGCTAATAAACTTGGAGAGGGAGGATTTGATCATGTTTATAAGGGGATTTTGCCCAAAAATCAAGAAGTAGCCATACTATCAAAGAAGTTCGGGCAAGGATATAAGGAGTTCACGAATGAGTTAAAACTTATAGCCAAGCTTCAACTTACAAATCTTGTTAGGCTCTTGGGTTGCTATATTGAAGAGGAGGAATTGATATTGATCTATGAGTACATGCCCAATCGAAGTTTGGACAAATTTGTTTTTGGGGTACTTTATATCCACAAGCACTCCAGATTGAAAATCATTCATAGGGATCTAAAAGCTAGTAATGCTTTGTTAGATGCAGAAATGAATCCCAAAATTTCTGACCTTAGAATGGCAAAGATTTTCGACATGAATCAAACCGAAGCAAACACCAACAGGGTTGTTGGAATGTACGATTACATGTTTCCTGAGTATGCATGTTATGACCATTTCTCTGAGAAATTGGATGTGTTCAGTTCTTGGAAATTATGGAAAGAAGGTAAAGGGGTGGAGGTAATTAATGCATCAATGAGAGAAACATGTTTGTCTCATGAAGCTTTAAGGTGTATCCATGTTGCGTTTTTGTGTGTTCAAGAAGCTCCAGCTGATCCACCAGCAATGTCTTCCATAGTTCACTTGTTGGTCAATGAAGCAACACCAATTCCCCTCTTCAAAGAACTTGCATATTCAATGGAGACTACTTTTGGTGATGTTAGTTCTTCTCCATCAAATGGAGTCACCATTACTATCCCAGAAAGTCGATAG

Protein Analysis

331

Amino Acids

37.44

Weight (kDa)

5.78

Isoelectric Point (pI)

47.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 74 - 155 3.7e-09 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 75 - 156 1.6e-11 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 156 - 236 1.3e-12 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 161 - 236 1e-08 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000114)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_4g01160 FvH4_6g34940 FvH4_6g44062 FvH4_6g44106 FvH4_6g44106 FvH4_6g44106 FvH4_6g44107 FvH4_6g44107 FvH4_6g44109 FvH4_6g44140 FvH4_6g44190 FvH4_6g44200 FvH4_6g44240 FvH4_6g44241 FvH4_6g44242
malus_domestica MD09G1094900.v1.1 MD09G1100300.v1.1 MD09G1100400.v1.1 MD09G1100600.v1.1 MD09G1100800.v1.1 MD09G1100900.v1.1 MD09G1101300.v1.1 MD09G1255200.v1.1 MD17G1088400.v1.1 MD17G1088600.v1.1 MD17G1247900.v1.1 MD17G1248300.v1.1
prunus_persica Prupe.1G497000_v2.0.a1 Prupe.2G033300_v2.0.a1 Prupe.3G145500_v2.0.a1 Prupe.3G225400_v2.0.a1 Prupe.3G225700_v2.0.a1 Prupe.3G225700_v2.0.a1
pyrus_communis pycom06g12720 pycom06g12740 pycom09g01960 pycom09g02450 pycom17g08520 pycom17g08530 pycom17g08560 pycom17g24950 pycom17g25030 pycom17g25110 pycom17g25260 pycom17g25290
rosa_chinensis RchiOBHm_Chr1g0326521 RchiOBHm_Chr1g0326551 RchiOBHm_Chr1g0326591 RchiOBHm_Chr1g0328741 RchiOBHm_Chr1g0329371 RchiOBHm_Chr2g0145911 RchiOBHm_Chr2g0160891 RchiOBHm_Chr2g0160921 RchiOBHm_Chr2g0161001 RchiOBHm_Chr2g0161011 RchiOBHm_Chr2g0161431 RchiOBHm_Chr2g0165121 RchiOBHm_Chr2g0166301 RchiOBHm_Chr4g0399551 RchiOBHm_Chr4g0405681 RchiOBHm_Chr5g0066741 RchiOBHm_Chr5g0066841 RchiOBHm_Chr6g0273021 RchiOBHm_Chr7g0225151
rosa_laevigata RLG00000001843 RLG00000008827 RLG00000014283 RLG00000014284 RLG00000020173 RLG00000021244 RLG00000021246 RLG00000021248 RLG00000021283 RLG00000023606 RLG00000029921 RLG00000030066 RLG00000030067 RLG00000033456
rosa_multiflora Rmu_co7958161.1_g000001 Rmu_co8440151.1_g000001 Rmu_co8454989.1_g000001 Rmu_sc0000129.1_g000018 Rmu_sc0000322.1_g000011 Rmu_sc0000322.1_g000045 Rmu_sc0000605.1_g000051 Rmu_sc0000955.1_g000015 Rmu_sc0000955.1_g000020 Rmu_sc0001188.1_g000017 Rmu_sc0001188.1_g000019 Rmu_sc0001355.1_g000015 Rmu_sc0001702.1_g000005 Rmu_sc0001702.1_g000006 Rmu_sc0001702.1_g000007 Rmu_sc0001702.1_g000008 Rmu_sc0001702.1_g000009 Rmu_sc0001702.1_g000010 Rmu_sc0001702.1_g000011 Rmu_sc0001702.1_g000012 Rmu_sc0001702.1_g000013 Rmu_sc0001702.1_g000014 Rmu_sc0001702.1_g000015 Rmu_sc0001702.1_g000016 Rmu_sc0002473.1_g000012 Rmu_sc0002473.1_g000015 Rmu_sc0002773.1_g000029 Rmu_sc0004178.1_g000002 Rmu_sc0005189.1_g000006 Rmu_sc0005860.1_g000004 Rmu_sc0009205.1_g000005 Rmu_sc0009205.1_g000007 Rmu_sc0009205.1_g000023 Rmu_sc0009472.1_g000005 Rmu_sc0009858.1_g000015 Rmu_sc0020187.1_g000001
rosa_roxburghii Rroxscaffold_176G00431460 Rroxscaffold_176G00431480 Rroxscaffold_1G00014330 Rroxscaffold_1G00031590 Rroxscaffold_2G00088820 Rroxscaffold_2G00089330 Rroxscaffold_2G00089360 Rroxscaffold_2G00089370 Rroxscaffold_2G00089380 Rroxscaffold_2G00100370 Rroxscaffold_2G00100380 Rroxscaffold_4G00321410 Rroxscaffold_4G00323700 Rroxscaffold_4G00327640 Rroxscaffold_4G00327650 Rroxscaffold_5G00344450 Rroxscaffold_7G00202770 Rroxscaffold_7G00203450 Rroxscaffold_7G00203540
rosa_rugosa Rorug01G0061100 Rorug02G0482100 Rorug02G0485900 Rorug02G0485900 Rorug02G0489500 Rorug02G0489600 Rorug02G0489700 Rorug04G0016600 Rorug04G0016700 Rorug05G0379000 Rorug05G0516700 Rorug06G0007900 Rorug06G0009300
rosa_samantha Rh1AG076700 Rh1AG076800 Rh1AG077000 Rh1AG077300 Rh1AG094400 Rh1AG097500 Rh1AG402000 Rh1BG062700 Rh1BG062900 Rh1CG075500 Rh1CG075600 Rh1CG075800 Rh1CG090900 Rh1CG091400 Rh1CG091600 Rh1CG094100 Rh1DG082300 Rh1DG082500 Rh1DG097400 Rh2AG448200 Rh2AG448300 Rh2AG511600 Rh2AG547500 Rh2AG551400 Rh2AG551700 Rh2AG555800 Rh2AG588000 Rh2BG565900 Rh2BG566000 Rh2BG566300 Rh2BG569000 Rh2BG600000 Rh2CG435200 Rh2CG435300 Rh2CG496600 Rh2CG535400 Rh2CG535600 Rh2CG539700 Rh2CG562700 Rh2CG570900 Rh2DG574600 Rh2DG574800 Rh2DG578600 Rh2DG610200 Rh4CG140900 Rh4DG127800 Rh5AG438500 Rh5BG436500 Rh5BG455500 Rh5CG477600 Rh5DG470300 Rh6AG129500 Rh6AG129900 Rh6BG125700 Rh6BG126000 Rh6BG126700 Rh6BG126800 Rh6CG124500 Rh6CG124800 Rh6CG125200 Rh6CG125300 Rh6DG111400 Rh6DG111700 Rh6DG111800 Rh7DG373300
rosa_wichuraiana Rw0G014010 Rw1G006140 Rw1G006160 Rw1G006180 Rw1G006190 Rw1G007340 Rw1G007360 Rw2G045660 Rw2G045670 Rw2G045970 Rw2G048220 Rw4G010820 Rw5G041010 Rw6G011220 Rw6G011230 Rw7G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 131, 264
AccB7I CCANNNNNTGG 1 cut(s) 962
AclWI GGATC 2 cut(s) 528, 833
AcsI RAATTY 3 cut(s) 11, 461, 567
AfaI GTAC 3 cut(s) 437, 477, 644
AfiI CCNNNNNNNGG 2 cut(s) 583, 962
AflIII ACRYGT 2 cut(s) 651, 770
AgsI TTSAA 6 cut(s) 368, 407, 505, 824, 904, 921
AluBI AGCT 8 cut(s) 63, 203, 227, 364, 530, 788, 830, 836
AluI AGCT 8 cut(s) 63, 203, 227, 364, 530, 788, 830, 836
Alw21I GWGCWC 1 cut(s) 157
Alw26I GTCTC 2 cut(s) 783, 920
Alw44I GTGCAC 1 cut(s) 153
AlwI GGATC 2 cut(s) 528, 833
ApaLI GTGCAC 1 cut(s) 153
ApoI RAATTY 3 cut(s) 11, 461, 567
AseI ATTAAT 1 cut(s) 750
AsuHPI GGTGA 2 cut(s) 950, 961
BaeGI GKGCMC 1 cut(s) 157
BarI GAAGNNNNNNTAC 2 cut(s) 282, 314
BbsI GAAGAC 1 cut(s) 846
Bbv12I GWGCWC 1 cut(s) 157
BccI CCATC 1 cut(s) 964
BciVI GTATCC 1 cut(s) 809
BclI TGATCA 1 cut(s) 253
BcoDI GTCTC 2 cut(s) 783, 920
BfaI CTAG 2 cut(s) 60, 531
BfuI GTATCC 1 cut(s) 809
BmsI GCATC 2 cut(s) 538, 764
BpiI GAAGAC 1 cut(s) 846
BpmI CTGGAG 3 cut(s) 168, 481, 816
BpuEI CTTGAG 1 cut(s) 207
BsaBI GATNNNNATC 1 cut(s) 425
BsaJI CCNNGG 1 cut(s) 31
BsaXI ACNNNNNCTCC 2 cut(s) 479, 509
Bsc4I CCNNNNNNNGG 2 cut(s) 583, 962
Bse3DI GCAATG 1 cut(s) 855
Bse8I GATNNNNATC 1 cut(s) 425
BseDI CCNNGG 1 cut(s) 31
BseGI GGATG 1 cut(s) 703
BseJI GATNNNNATC 1 cut(s) 425
BseLI CCNNNNNNNGG 2 cut(s) 583, 962
BseMI GCAATG 1 cut(s) 855
BseMII CTCAG 2 cut(s) 651, 678
BseRI GAGGAG 1 cut(s) 425
BseSI GKGCMC 1 cut(s) 157
BsiHKAI GWGCWC 1 cut(s) 157
BslI CCNNNNNNNGG 2 cut(s) 583, 962
BsmAI GTCTC 2 cut(s) 783, 920
Bsp1286I GDGCHC 1 cut(s) 157
Bsp143I GATC 4 cut(s) 253, 426, 520, 838
BspCNI CTCAG 2 cut(s) 652, 679
BspHI TCATGA 1 cut(s) 781
BspPI GGATC 2 cut(s) 528, 833
BsrDI GCAATG 1 cut(s) 855
BssECI CCNNGG 1 cut(s) 31
BssMI GATC 4 cut(s) 253, 426, 520, 838
BssT1I CCWWGG 1 cut(s) 31
Bst6I CTCTTC 2 cut(s) 402, 905
BstDEI CTNAG 4 cut(s) 83, 578, 660, 687
BstF5I GGATG 1 cut(s) 703
BstKTI GATC 4 cut(s) 256, 429, 523, 841
BstMAI GTCTC 2 cut(s) 783, 920
BstMBI GATC 4 cut(s) 253, 426, 520, 838
BstMWI GCNNNNNNNGC 2 cut(s) 152, 536
BstNSI RCATGY 4 cut(s) 442, 655, 672, 774
BstSLI GKGCMC 1 cut(s) 157
BstV2I GAAGAC 1 cut(s) 846
BstX2I RGATCY 1 cut(s) 520
BstYI RGATCY 1 cut(s) 520
BsuI GTATCC 1 cut(s) 809
BtsCI GGATG 1 cut(s) 703
CciI TCATGA 1 cut(s) 781
Csp6I GTAC 3 cut(s) 436, 476, 643
CviAII CATG 8 cut(s) 257, 439, 601, 652, 669, 771, 782, 803
CviQI GTAC 3 cut(s) 436, 476, 643
DdeI CTNAG 4 cut(s) 83, 578, 660, 687
DpnI GATC 4 cut(s) 255, 428, 522, 840
DpnII GATC 4 cut(s) 253, 426, 520, 838
Eam1104I CTCTTC 2 cut(s) 402, 905
EarI CTCTTC 2 cut(s) 402, 905
Eco130I CCWWGG 1 cut(s) 31
EcoRI GAATTC 1 cut(s) 11
EcoT14I CCWWGG 1 cut(s) 31
EcoT22I ATGCAT 2 cut(s) 670, 757
ErhI CCWWGG 1 cut(s) 31
FaeI CATG 8 cut(s) 260, 442, 604, 655, 672, 774, 785, 806
FatI CATG 8 cut(s) 256, 438, 600, 651, 668, 770, 781, 802
FbaI TGATCA 1 cut(s) 253
FokI GGATG 1 cut(s) 710
FspBI CTAG 2 cut(s) 60, 531
GsuI CTGGAG 3 cut(s) 168, 481, 816
Hin1II CATG 8 cut(s) 260, 442, 604, 655, 672, 774, 785, 806
HindIII AAGCTT 2 cut(s) 362, 786
HinfI GANTC 3 cut(s) 559, 604, 966
HphI GGTGA 2 cut(s) 950, 961
Hpy166II GTNNAC 3 cut(s) 155, 336, 865
Hpy188I TCNGA 4 cut(s) 26, 91, 574, 688
Hpy188III TCNNGA 6 cut(s) 287, 337, 498, 659, 782, 824
Hpy8I GTNNAC 3 cut(s) 155, 336, 865
HpyAV CCTTC 1 cut(s) 722
HpyCH4V TGCA 5 cut(s) 155, 551, 668, 755, 914
HpyF10VI GCNNNNNNNGC 2 cut(s) 152, 536
HpyF3I CTNAG 4 cut(s) 83, 578, 660, 687
Hsp92II CATG 8 cut(s) 260, 442, 604, 655, 672, 774, 785, 806
Ksp22I TGATCA 1 cut(s) 253
Kzo9I GATC 4 cut(s) 253, 426, 520, 838
LmnI GCTCC 2 cut(s) 68, 835
LpnPI CCDG 7 cut(s) 97, 132, 511, 613, 672, 846, 858
LweI GCATC 2 cut(s) 538, 764
MaeI CTAG 2 cut(s) 60, 531
MaeIII GTNAC 2 cut(s) 95, 967
MalI GATC 4 cut(s) 255, 428, 522, 840
MboI GATC 4 cut(s) 253, 426, 520, 838
MboII GAAGA 5 cut(s) 20, 419, 846, 892, 942
MflI RGATCY 1 cut(s) 520
MhlI GDGCHC 1 cut(s) 157
MluCI AATT 9 cut(s) 11, 214, 416, 461, 567, 692, 716, 747, 891
MlyI GAGTC 1 cut(s) 975
MmeI TCCRAC 1 cut(s) 616
MnlI CCTC 8 cut(s) 26, 143, 235, 239, 403, 406, 736, 908
Mph1103I ATGCAT 2 cut(s) 670, 757
MseI TTAA 4 cut(s) 188, 347, 750, 791
MspA1I CMGCKG 1 cut(s) 836
MwoI GCNNNNNNNGC 2 cut(s) 152, 536
NdeII GATC 4 cut(s) 253, 426, 520, 838
NlaIII CATG 8 cut(s) 260, 442, 604, 655, 672, 774, 785, 806
NmuCI GTSAC 1 cut(s) 967
NsiI ATGCAT 2 cut(s) 670, 757
NspI RCATGY 4 cut(s) 442, 655, 672, 774
PagI TCATGA 1 cut(s) 781
PciI ACATGT 2 cut(s) 651, 770
PfeI GAWTC 2 cut(s) 559, 604
PflMI CCANNNNNTGG 1 cut(s) 962
PleI GAGTC 1 cut(s) 974
PpsI GAGTC 1 cut(s) 974
PscI ACATGT 2 cut(s) 651, 770
PshBI ATTAAT 1 cut(s) 750
PsiI TTATAA 2 cut(s) 131, 264
PsuI RGATCY 1 cut(s) 520
PvuII CAGCTG 1 cut(s) 836
RsaI GTAC 3 cut(s) 437, 477, 644
RsaNI GTAC 3 cut(s) 436, 476, 643
SaqAI TTAA 4 cut(s) 188, 347, 750, 791
Sau3AI GATC 4 cut(s) 253, 426, 520, 838
SchI GAGTC 1 cut(s) 975
SduI GDGCHC 1 cut(s) 157
SfaNI GCATC 2 cut(s) 538, 764
SmlI CTYRAG 1 cut(s) 222
SmoI CTYRAG 1 cut(s) 222
Sse9I AATT 9 cut(s) 11, 214, 416, 461, 567, 692, 716, 747, 891
SspMI CTAG 2 cut(s) 60, 531
StyI CCWWGG 1 cut(s) 31
TaqI TCGA 3 cut(s) 448, 597, 991
TasI AATT 9 cut(s) 11, 214, 416, 461, 567, 692, 716, 747, 891
TatI WGTACW 1 cut(s) 435
TfiI GAWTC 2 cut(s) 559, 604
Tru1I TTAA 4 cut(s) 188, 347, 750, 791
Tru9I TTAA 4 cut(s) 188, 347, 750, 791
TseFI GTSAC 1 cut(s) 967
Tsp45I GTSAC 1 cut(s) 967
TspDTI ATGAA 7 cut(s) 17, 177, 503, 572, 617, 798, 894
Van91I CCANNNNNTGG 1 cut(s) 962
VneI GTGCAC 1 cut(s) 153
VspI ATTAAT 1 cut(s) 750
XapI RAATTY 3 cut(s) 11, 461, 567
XceI RCATGY 4 cut(s) 442, 655, 672, 774
XcmI CCANNNNNNNNNTGG 1 cut(s) 451
XspI CTAG 2 cut(s) 60, 531
Zsp2I ATGCAT 2 cut(s) 670, 757
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.