RchiOBHm_Chr1g0328741

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000114
Physical Location & Seq
Forward (+)
18127704 .. 18131562
3859 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55811

Sequence Viewer

Length: 2415 bp
ATGGGGTGGCTCTTGTGTTACCTTGTAACACTGCTTTTATCTCACATCCTCTCATTCTGTACCTGCCAAGACCAAATAGTACCAGGACAGTATATCAGTGGTAACATGACTTTGGTTTCTTCCTTAGAGACCTTTTCATTAGGCTTCTTCAATCCTGAAAATTCTACTAAATACTTCCTTGGTATACGATTCAACAAATTCCCAAATACTGCATCAGTATGGGTAGCTAATAGAGAATCTCCACTTGATTCTCCGGGTTTCTTTATGCTCAGTAGCGATGGAAATCTTGTGGTGTTGGATCAGGCTAAAAAACTTGTCTGGTCAACTAATGCATCCGTATCTGCTTCTGCAATGAATCACACAACTGGATTACTAGAGGATACCGGAAACCTTGTTCTGAGCTTTGAAGATGTCACTTTATGGCAGAGCTTCGATCATCCCTGTGATACTATGTTGCCTGGCATGAAGATTAGCTTGAACAAAAAGACTGGCCAACAAAGGCGCCTTACATCCTGGGCTGCGCTTGATGATCCACAACCCGGAAAGTTCACCTTGGGCATAGATCCTAAAGTACCAGTTCAGGCCTTTATCTGGAAGGAAACTACTCCAATACAAAGAAGTCCTCTGTACATTGGCAAGGATATAAGAACAGCGTTTCAAAATCCAGGTGGAACGGCGTTTTTCCTTTCATACAACTTTGATGTTGATGATGTTTATCTTACTTACATTGTCTCGGATAGCTCAGTAAAATTGAGGGTCTGGTTGGATCCTACAGGGCTAGTTAAATTGCAGTTCTGGCAGAATTCTAGTAAAACGTGGTTGGAACAAGGGACTTCACCGCCCGTTCATAACTGTGATTTTTATGCTTATTGCGGTCCCAATAGTGCCTGTCGTAGTGGTGAACCCCTGTCATCACCATGCAAGTGTTTGACTGGTTTTACAGCCAAGTTTCCGAACCAATCGGCAGTGGGGGATTGGTCCAGTGGCTGCATTAGGGAAAAGGTGTTGACATGTGGTAACGGCATACAAGGTAACTTTTCAAAGCTTGAAAAGGTGAAACTGCCGGATCATTCTGTACTGTTAAACAATAGGAGTATGAACGAGTGTGAATCTGAATGTCGGCGGAACTGTTCTTGCACGGCTTATGCTTATGTATATGCGACAGATGGAAGTAATATTGGGACATGCTTGGCATGGTTTGGCAAATTACTGGATCTGGTAGAGAATTTTAACAACTCTAGACATGATATCTATTTTCGTGTTCATGGCTCCGAACTAGGCAAAAAGGGTCTTTCTGTTAATTCCTTGAAGCGGACCCTTGTAATTGCAATAGTCTCTGCAGCAGTTGGATTGCTTACAATAACTTTTGGCTATTTCTTTTGGAAGAAAAAATTGGAAAAGAAAGGAGGTGGAAAGAATGATACAGAATTACCAATCTTCAGTTTAAGGAGTATGTTAGCTGCTACAAACAACTTCTCTGAAGCGAATAAACTTGGAGAGGGGGGATTCGGCCCTGTTTATAAGGGAATTTTGCAAGAAAATCAAGAAGTGGCCATAAAGAGGCTATCAAAGAAGTCTGGGCAAGGACATAATGAGTTCAAGAATGAGTTGAAACTTATAGCCAAACTCCAGCATACCAATCTTGTAAGGCTATTGGGTTGCTGTATGGAAGGAGATGAAATGATATTGATCTATGAGTACATGTCTAATCGAAGTTTGGACAAATTTTTGTTTGATCCTTTTGAAAAGACAAGGTTAGATTGGGATACACGCTTTCGAATTATACAAGGTATTGCTCAAGGAGTACTATATATTCACAAGTACTCTAGATTGAAAATCATCCACAGAGATCTGAAAGCAAGTAATGTTCTGTTGGATGGAACAATGAACCCCAAAGTGTCCGACTTTGGAATGGCGAGAATTTTTGATATAAATCAAATTGAAGCAAATACCAACAAGGTTGTTGGGACATACGGTTACATGTCTCCTGAATATGCACTCTATGGTCATTTTTCCGAGAAGTTGGATGTATTTAGTTTTGGAGTATTGTTGTTAGAGATTATAAGTGGAAAGAAGAATGCTTCTTTTTATCGTTTTGAAAATTCACTAACACTTGCTCAGTGGGTATGGGAATTATGGAAAGAAGGTAGAGGAATGGAGGTAATTGACGCGTCAGTAAAGGAAACATGCCGAATTCATGAAGCTTTGAGGTGTATCCATGTCGGGCTTTTGTGTGTTCAAGAAGCTCCAGCTGATCGACCAACAATGTCATCGGTGATTCATATGCTCGAGGTCAATGAAGCTACATCACTTCCACCCTCCAAAGAACCTGGATTTTCAACATGTAGGAATTCAAGTCATGTTACCACTTATTCTAACAATGTAGTTACTATTACTTTGCCAGATCCTCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

804

Amino Acids

90.02

Weight (kDa)

8.2

Isoelectric Point (pI)

37.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 73 - 172 5.8e-32 D-mannose binding lectin
S_locus_glycop PF00954 233 - 316 3.8e-16 S-locus glycoprotein domain
PAN_2 PF08276 344 - 406 4.5e-14 PAN-like domain
Pkinase PF00069 493 - 761 2.8e-46 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 495 - 762 9e-49 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000114)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_4g01160 FvH4_6g34940 FvH4_6g44062 FvH4_6g44106 FvH4_6g44106 FvH4_6g44106 FvH4_6g44107 FvH4_6g44107 FvH4_6g44109 FvH4_6g44140 FvH4_6g44190 FvH4_6g44200 FvH4_6g44240 FvH4_6g44241 FvH4_6g44242
malus_domestica MD09G1094900.v1.1 MD09G1100300.v1.1 MD09G1100400.v1.1 MD09G1100600.v1.1 MD09G1100800.v1.1 MD09G1100900.v1.1 MD09G1101300.v1.1 MD09G1255200.v1.1 MD17G1088400.v1.1 MD17G1088600.v1.1 MD17G1247900.v1.1 MD17G1248300.v1.1
prunus_persica Prupe.1G497000_v2.0.a1 Prupe.2G033300_v2.0.a1 Prupe.3G145500_v2.0.a1 Prupe.3G225400_v2.0.a1 Prupe.3G225700_v2.0.a1 Prupe.3G225700_v2.0.a1
pyrus_communis pycom06g12720 pycom06g12740 pycom09g01960 pycom09g02450 pycom17g08520 pycom17g08530 pycom17g08560 pycom17g24950 pycom17g25030 pycom17g25110 pycom17g25260 pycom17g25290
rosa_chinensis RchiOBHm_Chr1g0326521 RchiOBHm_Chr1g0326551 RchiOBHm_Chr1g0326591 RchiOBHm_Chr1g0328741 RchiOBHm_Chr1g0329371 RchiOBHm_Chr2g0145911 RchiOBHm_Chr2g0160891 RchiOBHm_Chr2g0160921 RchiOBHm_Chr2g0161001 RchiOBHm_Chr2g0161011 RchiOBHm_Chr2g0161431 RchiOBHm_Chr2g0165121 RchiOBHm_Chr2g0166301 RchiOBHm_Chr4g0399551 RchiOBHm_Chr4g0405681 RchiOBHm_Chr5g0066741 RchiOBHm_Chr5g0066841 RchiOBHm_Chr6g0273021 RchiOBHm_Chr7g0225151
rosa_laevigata RLG00000001843 RLG00000008827 RLG00000014283 RLG00000014284 RLG00000020173 RLG00000021244 RLG00000021246 RLG00000021248 RLG00000021283 RLG00000023606 RLG00000029921 RLG00000030066 RLG00000030067 RLG00000033456
rosa_multiflora Rmu_co7958161.1_g000001 Rmu_co8440151.1_g000001 Rmu_co8454989.1_g000001 Rmu_sc0000129.1_g000018 Rmu_sc0000322.1_g000011 Rmu_sc0000322.1_g000045 Rmu_sc0000605.1_g000051 Rmu_sc0000955.1_g000015 Rmu_sc0000955.1_g000020 Rmu_sc0001188.1_g000017 Rmu_sc0001188.1_g000019 Rmu_sc0001355.1_g000015 Rmu_sc0001702.1_g000005 Rmu_sc0001702.1_g000006 Rmu_sc0001702.1_g000007 Rmu_sc0001702.1_g000008 Rmu_sc0001702.1_g000009 Rmu_sc0001702.1_g000010 Rmu_sc0001702.1_g000011 Rmu_sc0001702.1_g000012 Rmu_sc0001702.1_g000013 Rmu_sc0001702.1_g000014 Rmu_sc0001702.1_g000015 Rmu_sc0001702.1_g000016 Rmu_sc0002473.1_g000012 Rmu_sc0002473.1_g000015 Rmu_sc0002773.1_g000029 Rmu_sc0004178.1_g000002 Rmu_sc0005189.1_g000006 Rmu_sc0005860.1_g000004 Rmu_sc0009205.1_g000005 Rmu_sc0009205.1_g000007 Rmu_sc0009205.1_g000023 Rmu_sc0009472.1_g000005 Rmu_sc0009858.1_g000015 Rmu_sc0020187.1_g000001
rosa_roxburghii Rroxscaffold_176G00431460 Rroxscaffold_176G00431480 Rroxscaffold_1G00014330 Rroxscaffold_1G00031590 Rroxscaffold_2G00088820 Rroxscaffold_2G00089330 Rroxscaffold_2G00089360 Rroxscaffold_2G00089370 Rroxscaffold_2G00089380 Rroxscaffold_2G00100370 Rroxscaffold_2G00100380 Rroxscaffold_4G00321410 Rroxscaffold_4G00323700 Rroxscaffold_4G00327640 Rroxscaffold_4G00327650 Rroxscaffold_5G00344450 Rroxscaffold_7G00202770 Rroxscaffold_7G00203450 Rroxscaffold_7G00203540
rosa_rugosa Rorug01G0061100 Rorug02G0482100 Rorug02G0485900 Rorug02G0485900 Rorug02G0489500 Rorug02G0489600 Rorug02G0489700 Rorug04G0016600 Rorug04G0016700 Rorug05G0379000 Rorug05G0516700 Rorug06G0007900 Rorug06G0009300
rosa_samantha Rh1AG076700 Rh1AG076800 Rh1AG077000 Rh1AG077300 Rh1AG094400 Rh1AG097500 Rh1AG402000 Rh1BG062700 Rh1BG062900 Rh1CG075500 Rh1CG075600 Rh1CG075800 Rh1CG090900 Rh1CG091400 Rh1CG091600 Rh1CG094100 Rh1DG082300 Rh1DG082500 Rh1DG097400 Rh2AG448200 Rh2AG448300 Rh2AG511600 Rh2AG547500 Rh2AG551400 Rh2AG551700 Rh2AG555800 Rh2AG588000 Rh2BG565900 Rh2BG566000 Rh2BG566300 Rh2BG569000 Rh2BG600000 Rh2CG435200 Rh2CG435300 Rh2CG496600 Rh2CG535400 Rh2CG535600 Rh2CG539700 Rh2CG562700 Rh2CG570900 Rh2DG574600 Rh2DG574800 Rh2DG578600 Rh2DG610200 Rh4CG140900 Rh4DG127800 Rh5AG438500 Rh5BG436500 Rh5BG455500 Rh5CG477600 Rh5DG470300 Rh6AG129500 Rh6AG129900 Rh6BG125700 Rh6BG126000 Rh6BG126700 Rh6BG126800 Rh6CG124500 Rh6CG124800 Rh6CG125200 Rh6CG125300 Rh6DG111400 Rh6DG111700 Rh6DG111800 Rh7DG373300
rosa_wichuraiana Rw0G014010 Rw1G006140 Rw1G006160 Rw1G006180 Rw1G006190 Rw1G007340 Rw1G007360 Rw2G045660 Rw2G045670 Rw2G045970 Rw2G048220 Rw4G010820 Rw5G041010 Rw6G011220 Rw6G011230 Rw7G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1521, 2063
Acc36I ACCTGC 1 cut(s) 71
AccB1I GGYRCC 1 cut(s) 501
AccI GTMKAC 1 cut(s) 184
AccII CGCG 1 cut(s) 2171
AciI CCGC 4 cut(s) 839, 873, 1123, 1312
AclWI GGATC 9 cut(s) 306, 524, 557, 761, 774, 1074, 1221, 1730, 2399
AcoI YGGCCR 2 cut(s) 490, 1551
AcuI CTGAAG 2 cut(s) 1423, 1500
AcyI GRCGYC 1 cut(s) 502
AfaI GTAC 8 cut(s) 61, 81, 573, 629, 1077, 1700, 1806, 1823
AfiI CCNNNNNNNGG 4 cut(s) 539, 591, 1311, 1560
AflIII ACRYGT 5 cut(s) 1010, 1701, 1980, 2169, 2342
AjnI CCWGG 5 cut(s) 82, 457, 512, 664, 2329
AjuI GAANNNNNNNTTGG 2 cut(s) 1376, 1408
AloI GAACNNNNNNTCC 2 cut(s) 378, 410
Alw26I GTCTC 4 cut(s) 122, 736, 1339, 1989
AlwI GGATC 9 cut(s) 306, 524, 557, 761, 774, 1074, 1221, 1730, 2399
AlwNI CAGNNNCTG 1 cut(s) 987
Ama87I CYCGRG 1 cut(s) 2288
AoxI GGCC 4 cut(s) 490, 582, 1510, 1551
ApeKI GCWGC 4 cut(s) 518, 987, 1340, 1460
AspLEI GCGC 2 cut(s) 504, 523
AspS9I GGNCC 4 cut(s) 875, 978, 1314, 1511
AsuC2I CCSGG 2 cut(s) 255, 540
AsuHPI GGTGA 6 cut(s) 541, 828, 906, 911, 1066, 2287
AsuII TTCGAA 1 cut(s) 1777
AvaI CYCGRG 1 cut(s) 2288
AvaII GGWCC 3 cut(s) 875, 978, 1314
BalI TGGCCA 2 cut(s) 492, 1553
BamHI GGATCC 1 cut(s) 766
BanI GGYRCC 1 cut(s) 501
BbvI GCAGC 4 cut(s) 505, 974, 1352, 1447
BccI CCATC 3 cut(s) 272, 1160, 1871
BceAI ACGGC 3 cut(s) 690, 1036, 1155
BciT130I CCWGG 5 cut(s) 84, 459, 514, 666, 2331
BciVI GTATCC 3 cut(s) 373, 1759, 2225
BcnI CCSGG 2 cut(s) 255, 540
BcoDI GTCTC 4 cut(s) 122, 736, 1339, 1989
BfaI CTAG 6 cut(s) 374, 779, 807, 1239, 1277, 1827
BfmI CTRYAG 2 cut(s) 771, 1338
BfoI RGCGCY 1 cut(s) 505
BfuAI ACCTGC 1 cut(s) 71
BfuI GTATCC 3 cut(s) 373, 1759, 2225
BglII AGATCT 1 cut(s) 1849
BisI GCNGC 4 cut(s) 519, 988, 1341, 1461
BlsI GCNGC 4 cut(s) 520, 989, 1342, 1462
BmcAI AGTACT 2 cut(s) 1806, 1823
Bme1390I CCNGG 7 cut(s) 84, 255, 459, 514, 540, 666, 2331
Bme18I GGWCC 3 cut(s) 875, 978, 1314
BmeT110I CYCGRG 1 cut(s) 2288
BmgT120I GGNCC 4 cut(s) 875, 978, 1314, 1511
BmiI GGNNCC 5 cut(s) 503, 768, 877, 1270, 1316
BmrFI CCNGG 7 cut(s) 84, 255, 459, 514, 540, 666, 2331
BmsI GCATC 2 cut(s) 221, 341
BpmI CTGGAG 2 cut(s) 1613, 2232
Bpu14I TTCGAA 1 cut(s) 1777
BpuEI CTTGAG 1 cut(s) 1782
BpuMI CCSGG 2 cut(s) 255, 540
BsaBI GATNNNNATC 4 cut(s) 282, 714, 1688, 1932
BsaHI GRCGYC 1 cut(s) 502
BsaI GGTCTC 1 cut(s) 122
BsaJI CCNNGG 3 cut(s) 178, 513, 552
BsaWI WCCGGW 1 cut(s) 383
Bsc4I CCNNNNNNNGG 4 cut(s) 539, 591, 1311, 1560
Bse1I ACTGG 6 cut(s) 370, 493, 575, 937, 981, 1215
Bse3DI GCAATG 1 cut(s) 357
Bse8I GATNNNNATC 4 cut(s) 282, 714, 1688, 1932
BseBI CCWGG 5 cut(s) 84, 459, 514, 666, 2331
BseDI CCNNGG 3 cut(s) 178, 513, 552
BseGI GGATG 7 cut(s) 45, 332, 436, 509, 1839, 1882, 2032
BseJI GATNNNNATC 4 cut(s) 282, 714, 1688, 1932
BseLI CCNNNNNNNGG 4 cut(s) 539, 591, 1311, 1560
BseMI GCAATG 1 cut(s) 357
BseMII CTCAG 4 cut(s) 283, 389, 756, 2132
BseNI ACTGG 6 cut(s) 370, 493, 575, 937, 981, 1215
BseXI GCAGC 4 cut(s) 505, 974, 1352, 1447
Bsh1236I CGCG 1 cut(s) 2171
BshFI GGCC 4 cut(s) 492, 584, 1512, 1553
BshNI GGYRCC 1 cut(s) 501
BsiHKCI CYCGRG 1 cut(s) 2288
BsiSI CCGG 4 cut(s) 254, 384, 540, 1064
BslFI GGGAC 4 cut(s) 844, 861, 1195, 1981
BslI CCNNNNNNNGG 4 cut(s) 539, 591, 1311, 1560
BsmAI GTCTC 4 cut(s) 122, 736, 1339, 1989
BsmFI GGGAC 4 cut(s) 844, 861, 1195, 1981
BsmI GAATGC 1 cut(s) 2083
BsnI GGCC 4 cut(s) 492, 584, 1512, 1553
Bso31I GGTCTC 1 cut(s) 122
BsoBI CYCGRG 1 cut(s) 2288
Bsp119I TTCGAA 1 cut(s) 1777
Bsp1407I TGTACA 1 cut(s) 627
BspACI CCGC 4 cut(s) 839, 873, 1123, 1312
BspANI GGCC 4 cut(s) 492, 584, 1512, 1553
BspCNI CTCAG 4 cut(s) 282, 390, 755, 2131
BspFNI CGCG 1 cut(s) 2171
BspHI TCATGA 1 cut(s) 2197
BspLI GGNNCC 5 cut(s) 503, 768, 877, 1270, 1316
BspMAI CTGCAG 1 cut(s) 1342
BspMI ACCTGC 1 cut(s) 71
BspPI GGATC 9 cut(s) 306, 524, 557, 761, 774, 1074, 1221, 1730, 2399
BspT104I TTCGAA 1 cut(s) 1777
BspT107I GGYRCC 1 cut(s) 501
BspTNI GGTCTC 1 cut(s) 122
BsrDI GCAATG 1 cut(s) 357
BsrGI TGTACA 1 cut(s) 627
BsrI ACTGG 6 cut(s) 370, 493, 575, 937, 981, 1215
BssECI CCNNGG 3 cut(s) 178, 513, 552
BssNAI GTATAC 1 cut(s) 185
BssNI GRCGYC 1 cut(s) 502
BssT1I CCWWGG 2 cut(s) 178, 552
Bst1107I GTATAC 1 cut(s) 185
Bst2UI CCWGG 5 cut(s) 84, 459, 514, 666, 2331
Bst4CI ACNGT 5 cut(s) 90, 854, 1080, 1130, 1976
BstACI GRCGYC 1 cut(s) 502
BstAUI TGTACA 1 cut(s) 627
BstBI TTCGAA 1 cut(s) 1777
BstDEI CTNAG 5 cut(s) 124, 269, 398, 742, 2118
BstF5I GGATG 7 cut(s) 45, 332, 436, 509, 1839, 1882, 2032
BstFNI CGCG 1 cut(s) 2171
BstH2I RGCGCY 1 cut(s) 505
BstHHI GCGC 2 cut(s) 504, 523
BstMAI GTCTC 4 cut(s) 122, 736, 1339, 1989
BstMWI GCNNNNNNNGC 1 cut(s) 796
BstNI CCWGG 5 cut(s) 84, 459, 514, 666, 2331
BstNSI RCATGY 6 cut(s) 1014, 1188, 1705, 1984, 2190, 2346
BstSCI CCNGG 7 cut(s) 82, 253, 457, 512, 538, 664, 2329
BstSFI CTRYAG 2 cut(s) 771, 1338
BstUI CGCG 1 cut(s) 2171
BstV1I GCAGC 4 cut(s) 505, 974, 1352, 1447
BstX2I RGATCY 5 cut(s) 562, 766, 1213, 1849, 2404
BstYI RGATCY 5 cut(s) 562, 766, 1213, 1849, 2404
BstZ17I GTATAC 1 cut(s) 185
BsuI GTATCC 3 cut(s) 373, 1759, 2225
BsuRI GGCC 4 cut(s) 492, 584, 1512, 1553
BtgZI GCGATG 1 cut(s) 291
BtsCI GGATG 7 cut(s) 45, 332, 436, 509, 1839, 1882, 2032
BtsI GCAGTG 2 cut(s) 29, 972
BtsIMutI CAGTG 5 cut(s) 29, 103, 972, 988, 2126
BveI ACCTGC 1 cut(s) 71
CaiI CAGNNNCTG 1 cut(s) 987
CciI TCATGA 1 cut(s) 2197
CfoI GCGC 2 cut(s) 504, 523
Cfr13I GGNCC 4 cut(s) 875, 978, 1314, 1511
CseI GACGC 2 cut(s) 2160, 2177
Csp6I GTAC 8 cut(s) 60, 80, 572, 628, 1076, 1699, 1805, 1822
CviQI GTAC 8 cut(s) 60, 80, 572, 628, 1076, 1699, 1805, 1822
DdeI CTNAG 5 cut(s) 124, 269, 398, 742, 2118
DinI GGCGCC 1 cut(s) 503
EaeI YGGCCR 2 cut(s) 490, 1551
EciI GGCGGA 1 cut(s) 1138
Eco130I CCWWGG 2 cut(s) 178, 552
Eco147I AGGCCT 1 cut(s) 584
Eco31I GGTCTC 1 cut(s) 122
Eco32I GATATC 1 cut(s) 1249
Eco47I GGWCC 3 cut(s) 875, 978, 1314
Eco57I CTGAAG 2 cut(s) 1423, 1500
Eco88I CYCGRG 1 cut(s) 2288
EcoRI GAATTC 3 cut(s) 802, 2193, 2350
EcoRII CCWGG 5 cut(s) 82, 457, 512, 664, 2329
EcoRV GATATC 1 cut(s) 1249
EcoT14I CCWWGG 2 cut(s) 178, 552
EcoT22I ATGCAT 1 cut(s) 334
EgeI GGCGCC 1 cut(s) 503
EheI GGCGCC 1 cut(s) 503
ErhI CCWWGG 2 cut(s) 178, 552
FalI AAGNNNNNCTT 4 cut(s) 458, 490, 536, 568
FaqI GGGAC 4 cut(s) 844, 861, 1195, 1981
FauNDI CATATG 1 cut(s) 2283
FblI GTMKAC 1 cut(s) 184
Fnu4HI GCNGC 4 cut(s) 519, 988, 1341, 1461
FokI GGATG 7 cut(s) 32, 319, 423, 496, 1826, 1889, 2039
Fsp4HI GCNGC 4 cut(s) 519, 988, 1341, 1461
FspBI CTAG 6 cut(s) 374, 779, 807, 1239, 1277, 1827
GlaI GCGC 2 cut(s) 503, 522
GluI GCNGC 4 cut(s) 519, 988, 1341, 1461
GsuI CTGGAG 2 cut(s) 1613, 2232
HaeII RGCGCY 1 cut(s) 505
HaeIII GGCC 4 cut(s) 492, 584, 1512, 1553
HapII CCGG 4 cut(s) 254, 384, 540, 1064
HgaI GACGC 2 cut(s) 2160, 2177
HhaI GCGC 2 cut(s) 504, 523
Hin1I GRCGYC 1 cut(s) 502
Hin6I GCGC 2 cut(s) 502, 521
HinP1I GCGC 2 cut(s) 502, 521
HincII GTYRAC 2 cut(s) 324, 1008
HindII GTYRAC 2 cut(s) 324, 1008
HindIII AAGCTT 2 cut(s) 1043, 2202
HinfI GANTC 7 cut(s) 189, 236, 248, 355, 1109, 1506, 2278
HpaII CCGG 4 cut(s) 254, 384, 540, 1064
HphI GGTGA 6 cut(s) 541, 828, 906, 911, 1066, 2287
Hpy166II GTNNAC 5 cut(s) 185, 324, 549, 902, 1008
Hpy188I TCNGA 9 cut(s) 399, 736, 954, 1114, 1273, 1480, 1854, 1903, 2017
Hpy188III TCNNGA 9 cut(s) 155, 592, 1239, 1544, 1600, 1827, 1988, 2198, 2240
Hpy8I GTNNAC 5 cut(s) 185, 324, 549, 902, 1008
HpyAV CCTTC 3 cut(s) 589, 1664, 2138
HpyCH4III ACNGT 5 cut(s) 90, 854, 1080, 1130, 1976
HpyCH4IV ACGT 1 cut(s) 815
HpyF10VI GCNNNNNNNGC 1 cut(s) 796
HpyF3I CTNAG 5 cut(s) 124, 269, 398, 742, 2118
HpySE526I ACGT 1 cut(s) 815
Hsp92I GRCGYC 1 cut(s) 502
HspAI GCGC 2 cut(s) 502, 521
KasI GGCGCC 1 cut(s) 501
LmnI GCTCC 2 cut(s) 1274, 2251
Lsp1109I GCAGC 4 cut(s) 505, 974, 1352, 1447
LweI GCATC 2 cut(s) 221, 341
MaeI CTAG 6 cut(s) 374, 779, 807, 1239, 1277, 1827
MaeII ACGT 1 cut(s) 815
MaeIII GTNAC 9 cut(s) 17, 25, 101, 412, 1016, 1031, 1976, 2362, 2386
MboII GAAGA 7 cut(s) 111, 139, 419, 478, 1396, 1429, 2086
MflI RGATCY 5 cut(s) 562, 766, 1213, 1849, 2404
MlsI TGGCCA 2 cut(s) 492, 1553
MluI ACGCGT 1 cut(s) 2169
MluNI TGGCCA 2 cut(s) 492, 1553
Mly113I GGCGCC 1 cut(s) 502
MmeI TCCRAC 7 cut(s) 276, 744, 801, 1327, 1854, 1926, 2004
Mox20I TGGCCA 2 cut(s) 492, 1553
Mph1103I ATGCAT 1 cut(s) 334
MscI TGGCCA 2 cut(s) 492, 1553
MseI TTAA 5 cut(s) 783, 1082, 1230, 1299, 1445
MslI CAYNNNNRTG 5 cut(s) 217, 441, 852, 916, 922
Msp20I TGGCCA 2 cut(s) 492, 1553
MspA1I CMGCKG 1 cut(s) 2252
MspI CCGG 4 cut(s) 254, 384, 540, 1064
MspR9I CCNGG 7 cut(s) 84, 255, 459, 514, 540, 666, 2331
Mva1269I GAATGC 1 cut(s) 2083
MvaI CCWGG 5 cut(s) 84, 459, 514, 666, 2331
MvnI CGCG 1 cut(s) 2171
MwoI GCNNNNNNNGC 1 cut(s) 796
NarI GGCGCC 1 cut(s) 502
NciI CCSGG 2 cut(s) 255, 540
NdeI CATATG 1 cut(s) 2283
NlaIV GGNNCC 5 cut(s) 503, 768, 877, 1270, 1316
NmuCI GTSAC 1 cut(s) 412
NsiI ATGCAT 1 cut(s) 334
NspI RCATGY 6 cut(s) 1014, 1188, 1705, 1984, 2190, 2346
NspV TTCGAA 1 cut(s) 1777
PaeR7I CTCGAG 1 cut(s) 2288
PagI TCATGA 1 cut(s) 2197
PceI AGGCCT 1 cut(s) 584
PciI ACATGT 4 cut(s) 1010, 1701, 1980, 2342
PctI GAATGC 1 cut(s) 2083
PfeI GAWTC 7 cut(s) 189, 236, 248, 355, 1109, 1506, 2278
PkrI GCNGC 4 cut(s) 520, 989, 1342, 1462
PluTI GGCGCC 1 cut(s) 505
PscI ACATGT 4 cut(s) 1010, 1701, 1980, 2342
PsiI TTATAA 2 cut(s) 1521, 2063
Psp6I CCWGG 5 cut(s) 82, 457, 512, 664, 2329
PspGI CCWGG 5 cut(s) 82, 457, 512, 664, 2329
PspN4I GGNNCC 5 cut(s) 503, 768, 877, 1270, 1316
PspPI GGNCC 4 cut(s) 875, 978, 1314, 1511
PspXI VCTCGAGB 1 cut(s) 2288
PstI CTGCAG 1 cut(s) 1342
PstNI CAGNNNCTG 1 cut(s) 987
PsuI RGATCY 5 cut(s) 562, 766, 1213, 1849, 2404
PvuII CAGCTG 1 cut(s) 2252
RsaI GTAC 8 cut(s) 61, 81, 573, 629, 1077, 1700, 1806, 1823
RsaNI GTAC 8 cut(s) 60, 80, 572, 628, 1076, 1699, 1805, 1822
RseI CAYNNNNRTG 5 cut(s) 217, 441, 852, 916, 922
SaqAI TTAA 5 cut(s) 783, 1082, 1230, 1299, 1445
SatI GCNGC 4 cut(s) 519, 988, 1341, 1461
Sau96I GGNCC 4 cut(s) 875, 978, 1314, 1511
ScaI AGTACT 2 cut(s) 1806, 1823
ScrFI CCNGG 7 cut(s) 84, 255, 459, 514, 540, 666, 2331
SfaNI GCATC 2 cut(s) 221, 341
SfcI CTRYAG 2 cut(s) 771, 1338
SfoI GGCGCC 1 cut(s) 503
Sfr274I CTCGAG 1 cut(s) 2288
SfuI TTCGAA 1 cut(s) 1777
SinI GGWCC 3 cut(s) 875, 978, 1314
SlaI CTCGAG 1 cut(s) 2288
SmiMI CAYNNNNRTG 5 cut(s) 217, 441, 852, 916, 922
SmlI CTYRAG 2 cut(s) 1797, 2288
SmoI CTYRAG 2 cut(s) 1797, 2288
SseBI AGGCCT 1 cut(s) 584
SsiI CCGC 4 cut(s) 839, 873, 1123, 1312
SspDI GGCGCC 1 cut(s) 501
SspI AATATT 1 cut(s) 1177
SspMI CTAG 6 cut(s) 374, 779, 807, 1239, 1277, 1827
StuI AGGCCT 1 cut(s) 584
StyD4I CCNGG 7 cut(s) 82, 253, 457, 512, 538, 664, 2329
StyI CCWWGG 2 cut(s) 178, 552
TaaI ACNGT 5 cut(s) 90, 854, 1080, 1130, 1976
TaiI ACGT 1 cut(s) 818
TaqI TCGA 6 cut(s) 432, 1711, 1777, 2257, 2289, 2410
TatI WGTACW 5 cut(s) 627, 1075, 1698, 1804, 1821
TfiI GAWTC 7 cut(s) 189, 236, 248, 355, 1109, 1506, 2278
Tru1I TTAA 5 cut(s) 783, 1082, 1230, 1299, 1445
Tru9I TTAA 5 cut(s) 783, 1082, 1230, 1299, 1445
TscAI CASTG 5 cut(s) 36, 103, 972, 988, 2126
TseFI GTSAC 1 cut(s) 412
TseI GCWGC 4 cut(s) 518, 987, 1340, 1460
Tsp45I GTSAC 1 cut(s) 412
TspGWI ACGGA 1 cut(s) 325
TspRI CASTG 5 cut(s) 36, 103, 972, 988, 2126
VpaK11BI GGWCC 3 cut(s) 875, 978, 1314
XbaI TCTAGA 2 cut(s) 1238, 1826
XceI RCATGY 6 cut(s) 1014, 1188, 1705, 1984, 2190, 2346
XhoI CTCGAG 1 cut(s) 2288
XmiI GTMKAC 1 cut(s) 184
XspI CTAG 6 cut(s) 374, 779, 807, 1239, 1277, 1827
ZrmI AGTACT 2 cut(s) 1806, 1823
Zsp2I ATGCAT 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.