Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000114

Physical Location & Seq

Genomic Coordinates Forward (+)

11404412 .. 11411782

Gene Structure 7371 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00089380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGCACCACGTCAATTCTTGGTCCAAGGTCACAAAAAAAAGCTGATTTCCAGCTTCCACGGGGCTTGGGTCACCCCAATAGTGCAAGTCCCAAGTCAAGAAGCAGGTCAATCTCTTGTCCCAGGCCGTGACCCAGGCCTCCACCGTGGCCCAAAGAAGAGAGAGGAACATACGCGAGATGACAGTAATGGAACAACATTGTACCTCAGACTTGCAGCTTCCGAGTTTAAGAATTATAAGAGTGCCAAGAGTCATGCTAATAAGTGGTCCCTTATAATTGCAACAGTCTCAGCAACAGCAGGATTGCTTACAGTTATTTTAACTGAAAGTCAGGAAGTAGCCATAAAGAGGCTATCAAAGAAGTCTGGACAAGGACATCAAGAGTTCATGAATGAGTTGAAACTCATAGCCAAGCTCCAACACACCAATCTTGTTAGGCTCTTGGGGTGCTGTATTGAAAAGGGGGAAATGATACTGATCTATGAGTACATGCCTAATCGAAGTCTAGACAAATTCTTTGGATACATGTCACCTGAATATGAACTTTATGGCCAATTTTCTGAGAAGTCAGATGTATTTAGCTATGAGGTGTTATTGCTAGAGATTGTGAGTGAAAAGAGGAGTGGTAGTTTTTACCATATTGAACAAGCAGTCACTCTTGTTGGATGGGCATGGGAATTATGGAAAGAAGGTAAAGGAATGGAGGTGATTGATGCATCCATAAGGGAACACATGTCGGCCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

248

Amino Acids

28.06

Weight (kDa)

8.7

Isoelectric Point (pI)

47.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	108 - 172	6.5e-10	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	109 - 172	1.5e-13	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000114)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_1g07120 FvH4_4g01160 FvH4_6g34940 FvH4_6g44062 FvH4_6g44106 FvH4_6g44106 FvH4_6g44106 FvH4_6g44107 FvH4_6g44107 FvH4_6g44109 FvH4_6g44140 FvH4_6g44190 FvH4_6g44200 FvH4_6g44240 FvH4_6g44241 FvH4_6g44242
malus_domestica	MD09G1094900.v1.1 MD09G1100300.v1.1 MD09G1100400.v1.1 MD09G1100600.v1.1 MD09G1100800.v1.1 MD09G1100900.v1.1 MD09G1101300.v1.1 MD09G1255200.v1.1 MD17G1088400.v1.1 MD17G1088600.v1.1 MD17G1247900.v1.1 MD17G1248300.v1.1
prunus_persica	Prupe.1G497000_v2.0.a1 Prupe.2G033300_v2.0.a1 Prupe.3G145500_v2.0.a1 Prupe.3G225400_v2.0.a1 Prupe.3G225700_v2.0.a1 Prupe.3G225700_v2.0.a1
pyrus_communis	pycom06g12720 pycom06g12740 pycom09g01960 pycom09g02450 pycom17g08520 pycom17g08530 pycom17g08560 pycom17g24950 pycom17g25030 pycom17g25110 pycom17g25260 pycom17g25290
rosa_chinensis	RchiOBHm_Chr1g0326521 RchiOBHm_Chr1g0326551 RchiOBHm_Chr1g0326591 RchiOBHm_Chr1g0328741 RchiOBHm_Chr1g0329371 RchiOBHm_Chr2g0145911 RchiOBHm_Chr2g0160891 RchiOBHm_Chr2g0160921 RchiOBHm_Chr2g0161001 RchiOBHm_Chr2g0161011 RchiOBHm_Chr2g0161431 RchiOBHm_Chr2g0165121 RchiOBHm_Chr2g0166301 RchiOBHm_Chr4g0399551 RchiOBHm_Chr4g0405681 RchiOBHm_Chr5g0066741 RchiOBHm_Chr5g0066841 RchiOBHm_Chr6g0273021 RchiOBHm_Chr7g0225151
rosa_laevigata	RLG00000001843 RLG00000008827 RLG00000014283 RLG00000014284 RLG00000020173 RLG00000021244 RLG00000021246 RLG00000021248 RLG00000021283 RLG00000023606 RLG00000029921 RLG00000030066 RLG00000030067 RLG00000033456
rosa_multiflora	Rmu_co7958161.1_g000001 Rmu_co8440151.1_g000001 Rmu_co8454989.1_g000001 Rmu_sc0000129.1_g000018 Rmu_sc0000322.1_g000011 Rmu_sc0000322.1_g000045 Rmu_sc0000605.1_g000051 Rmu_sc0000955.1_g000015 Rmu_sc0000955.1_g000020 Rmu_sc0001188.1_g000017 Rmu_sc0001188.1_g000019 Rmu_sc0001355.1_g000015 Rmu_sc0001702.1_g000005 Rmu_sc0001702.1_g000006 Rmu_sc0001702.1_g000007 Rmu_sc0001702.1_g000008 Rmu_sc0001702.1_g000009 Rmu_sc0001702.1_g000010 Rmu_sc0001702.1_g000011 Rmu_sc0001702.1_g000012 Rmu_sc0001702.1_g000013 Rmu_sc0001702.1_g000014 Rmu_sc0001702.1_g000015 Rmu_sc0001702.1_g000016 Rmu_sc0002473.1_g000012 Rmu_sc0002473.1_g000015 Rmu_sc0002773.1_g000029 Rmu_sc0004178.1_g000002 Rmu_sc0005189.1_g000006 Rmu_sc0005860.1_g000004 Rmu_sc0009205.1_g000005 Rmu_sc0009205.1_g000007 Rmu_sc0009205.1_g000023 Rmu_sc0009472.1_g000005 Rmu_sc0009858.1_g000015 Rmu_sc0020187.1_g000001
rosa_roxburghii	Rroxscaffold_176G00431460 Rroxscaffold_176G00431480 Rroxscaffold_1G00014330 Rroxscaffold_1G00031590 Rroxscaffold_2G00088820 Rroxscaffold_2G00089330 Rroxscaffold_2G00089360 Rroxscaffold_2G00089370 Rroxscaffold_2G00089380 Rroxscaffold_2G00100370 Rroxscaffold_2G00100380 Rroxscaffold_4G00321410 Rroxscaffold_4G00323700 Rroxscaffold_4G00327640 Rroxscaffold_4G00327650 Rroxscaffold_5G00344450 Rroxscaffold_7G00202770 Rroxscaffold_7G00203450 Rroxscaffold_7G00203540
rosa_rugosa	Rorug01G0061100 Rorug02G0482100 Rorug02G0485900 Rorug02G0485900 Rorug02G0489500 Rorug02G0489600 Rorug02G0489700 Rorug04G0016600 Rorug04G0016700 Rorug05G0379000 Rorug05G0516700 Rorug06G0007900 Rorug06G0009300
rosa_samantha	Rh1AG076700 Rh1AG076800 Rh1AG077000 Rh1AG077300 Rh1AG094400 Rh1AG097500 Rh1AG402000 Rh1BG062700 Rh1BG062900 Rh1CG075500 Rh1CG075600 Rh1CG075800 Rh1CG090900 Rh1CG091400 Rh1CG091600 Rh1CG094100 Rh1DG082300 Rh1DG082500 Rh1DG097400 Rh2AG448200 Rh2AG448300 Rh2AG511600 Rh2AG547500 Rh2AG551400 Rh2AG551700 Rh2AG555800 Rh2AG588000 Rh2BG565900 Rh2BG566000 Rh2BG566300 Rh2BG569000 Rh2BG600000 Rh2CG435200 Rh2CG435300 Rh2CG496600 Rh2CG535400 Rh2CG535600 Rh2CG539700 Rh2CG562700 Rh2CG570900 Rh2DG574600 Rh2DG574800 Rh2DG578600 Rh2DG610200 Rh4CG140900 Rh4DG127800 Rh5AG438500 Rh5BG436500 Rh5BG455500 Rh5CG477600 Rh5DG470300 Rh6AG129500 Rh6AG129900 Rh6BG125700 Rh6BG126000 Rh6BG126700 Rh6BG126800 Rh6CG124500 Rh6CG124800 Rh6CG125200 Rh6CG125300 Rh6DG111400 Rh6DG111700 Rh6DG111800 Rh7DG373300
rosa_wichuraiana	Rw0G014010 Rw1G006140 Rw1G006160 Rw1G006180 Rw1G006190 Rw1G007340 Rw1G007360 Rw2G045660 Rw2G045670 Rw2G045970 Rw2G048220 Rw4G010820 Rw5G041010 Rw6G011220 Rw6G011230 Rw7G031490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	237, 275
Acc36I	ACCTGC	1 cut(s)	95
AccB1I	GGYRCC	1 cut(s)	4
AccII	CGCG	1 cut(s)	175
AcoI	YGGCCR	1 cut(s)	550
AcsI	RAATTY	1 cut(s)	512
AfaI	GTAC	2 cut(s)	203, 488
AfiI	CCNNNNNNNGG	1 cut(s)	348
AflIII	ACRYGT	2 cut(s)	525, 732
AgsI	TTSAA	3 cut(s)	400, 458, 644
AjiI	CACGTC	1 cut(s)	11
AjnI	CCWGG	2 cut(s)	121, 133
AluBI	AGCT	5 cut(s)	43, 54, 218, 415, 582
AluI	AGCT	5 cut(s)	43, 54, 218, 415, 582
Alw26I	GTCTC	1 cut(s)	292
AoxI	GGCC	5 cut(s)	124, 136, 148, 550, 738
ApeKI	GCWGC	1 cut(s)	215
ApoI	RAATTY	1 cut(s)	512
ArsI	GACNNNNNNTTYG	2 cut(s)	500, 532
AspS9I	GGNCC	3 cut(s)	22, 149, 267
AsuHPI	GGTGA	3 cut(s)	64, 522, 718
AvaII	GGWCC	2 cut(s)	22, 267
BalI	TGGCCA	1 cut(s)	552
BanI	GGYRCC	1 cut(s)	4
BbvI	GCAGC	1 cut(s)	227
BccI	CCATC	1 cut(s)	660
BceAI	ACGGC	1 cut(s)	111
BciT130I	CCWGG	2 cut(s)	123, 135
BciVI	GTATCC	1 cut(s)	515
BcoDI	GTCTC	1 cut(s)	292
BfaI	CTAG	2 cut(s)	506, 599
BfuAI	ACCTGC	1 cut(s)	95
BfuI	GTATCC	1 cut(s)	515
BisI	GCNGC	1 cut(s)	216
BlsI	GCNGC	1 cut(s)	217
Bme1390I	CCNGG	2 cut(s)	123, 135
Bme18I	GGWCC	2 cut(s)	22, 267
BmgBI	CACGTC	1 cut(s)	11
BmgT120I	GGNCC	3 cut(s)	22, 149, 267
BmiI	GGNNCC	2 cut(s)	6, 269
BmrFI	CCNGG	2 cut(s)	123, 135
BmsI	GCATC	2 cut(s)	703, 725
BsaBI	GATNNNNATC	1 cut(s)	476
BsaJI	CCNNGG	5 cut(s)	25, 58, 121, 133, 145
BsaXI	ACNNNNNCTCC	2 cut(s)	613, 643
Bsc4I	CCNNNNNNNGG	1 cut(s)	348
Bse8I	GATNNNNATC	1 cut(s)	476
BseBI	CCWGG	2 cut(s)	123, 135
BseDI	CCNNGG	5 cut(s)	25, 58, 121, 133, 145
BseGI	GGATG	2 cut(s)	671, 716
BseJI	GATNNNNATC	1 cut(s)	476
BseLI	CCNNNNNNNGG	1 cut(s)	348
BseMII	CTCAG	3 cut(s)	220, 303, 552
BseRI	GAGGAG	1 cut(s)	634
BseXI	GCAGC	1 cut(s)	227
Bsh1236I	CGCG	1 cut(s)	175
BshFI	GGCC	5 cut(s)	126, 138, 150, 552, 740
BshNI	GGYRCC	1 cut(s)	4
BslFI	GGGAC	3 cut(s)	74, 104, 253
BslI	CCNNNNNNNGG	1 cut(s)	348
BsmAI	GTCTC	1 cut(s)	292
BsmFI	GGGAC	3 cut(s)	74, 104, 253
BsnI	GGCC	5 cut(s)	126, 138, 150, 552, 740
Bsp143I	GATC	1 cut(s)	477
BspANI	GGCC	5 cut(s)	126, 138, 150, 552, 740
BspCNI	CTCAG	3 cut(s)	219, 302, 553
BspFNI	CGCG	1 cut(s)	175
BspHI	TCATGA	2 cut(s)	387, 743
BspLI	GGNNCC	2 cut(s)	6, 269
BspMI	ACCTGC	1 cut(s)	95
BspT107I	GGYRCC	1 cut(s)	4
BssECI	CCNNGG	5 cut(s)	25, 58, 121, 133, 145
BssMI	GATC	1 cut(s)	477
BssT1I	CCWWGG	1 cut(s)	25
Bst2UI	CCWGG	2 cut(s)	123, 135
Bst4CI	ACNGT	4 cut(s)	146, 185, 286, 313
Bst6I	CTCTTC	1 cut(s)	152
BstDEI	CTNAG	3 cut(s)	206, 289, 561
BstDSI	CCRYGG	2 cut(s)	58, 145
BstEII	GGTNACC	1 cut(s)	70
BstF5I	GGATG	2 cut(s)	671, 716
BstFNI	CGCG	1 cut(s)	175
BstKTI	GATC	1 cut(s)	480
BstMAI	GTCTC	1 cut(s)	292
BstMBI	GATC	1 cut(s)	477
BstNI	CCWGG	2 cut(s)	123, 135
BstNSI	RCATGY	3 cut(s)	493, 529, 736
BstPI	GGTNACC	1 cut(s)	70
BstSCI	CCNGG	2 cut(s)	121, 133
BstUI	CGCG	1 cut(s)	175
BstV1I	GCAGC	1 cut(s)	227
BsuI	GTATCC	1 cut(s)	515
BsuRI	GGCC	5 cut(s)	126, 138, 150, 552, 740
BtgI	CCRYGG	2 cut(s)	58, 145
BtrI	CACGTC	1 cut(s)	11
BtsCI	GGATG	2 cut(s)	671, 716
BveI	ACCTGC	1 cut(s)	95
CciI	TCATGA	2 cut(s)	387, 743
Cfr13I	GGNCC	3 cut(s)	22, 149, 267
Csp6I	GTAC	2 cut(s)	202, 487
CspCI	CAANNNNNGTGG	2 cut(s)	47, 82
CviAII	CATG	7 cut(s)	254, 388, 490, 526, 672, 733, 744
CviQI	GTAC	2 cut(s)	202, 487
DdeI	CTNAG	3 cut(s)	206, 289, 561
DpnI	GATC	1 cut(s)	479
DpnII	GATC	1 cut(s)	477
EaeI	YGGCCR	1 cut(s)	550
Eam1104I	CTCTTC	1 cut(s)	152
EarI	CTCTTC	1 cut(s)	152
Eco130I	CCWWGG	1 cut(s)	25
Eco147I	AGGCCT	1 cut(s)	138
Eco47I	GGWCC	2 cut(s)	22, 267
Eco91I	GGTNACC	1 cut(s)	70
EcoO65I	GGTNACC	1 cut(s)	70
EcoRII	CCWGG	2 cut(s)	121, 133
EcoT14I	CCWWGG	1 cut(s)	25
EcoT22I	ATGCAT	1 cut(s)	718
ErhI	CCWWGG	1 cut(s)	25
FaeI	CATG	7 cut(s)	257, 391, 493, 529, 675, 736, 747
FaqI	GGGAC	3 cut(s)	74, 104, 253
FatI	CATG	7 cut(s)	253, 387, 489, 525, 671, 732, 743
Fnu4HI	GCNGC	1 cut(s)	216
FokI	GGATG	2 cut(s)	678, 703
Fsp4HI	GCNGC	1 cut(s)	216
FspBI	CTAG	2 cut(s)	506, 599
GluI	GCNGC	1 cut(s)	216
HaeIII	GGCC	5 cut(s)	126, 138, 150, 552, 740
Hin1II	CATG	7 cut(s)	257, 391, 493, 529, 675, 736, 747
HinfI	GANTC	1 cut(s)	250
HphI	GGTGA	3 cut(s)	64, 522, 718
Hpy188I	TCNGA	4 cut(s)	209, 223, 562, 571
Hpy188III	TCNNGA	7 cut(s)	98, 332, 366, 380, 388, 506, 744
HpyAV	CCTTC	1 cut(s)	683
HpyCH4III	ACNGT	4 cut(s)	146, 185, 286, 313
HpyCH4IV	ACGT	1 cut(s)	10
HpyCH4V	TGCA	4 cut(s)	85, 215, 281, 716
HpyF3I	CTNAG	3 cut(s)	206, 289, 561
HpySE526I	ACGT	1 cut(s)	10
Hsp92II	CATG	7 cut(s)	257, 391, 493, 529, 675, 736, 747
Kzo9I	GATC	1 cut(s)	477
LmnI	GCTCC	1 cut(s)	420
Lsp1109I	GCAGC	1 cut(s)	227
LweI	GCATC	2 cut(s)	703, 725
MaeI	CTAG	2 cut(s)	506, 599
MaeII	ACGT	1 cut(s)	10
MaeIII	GTNAC	5 cut(s)	29, 70, 128, 528, 652
MalI	GATC	1 cut(s)	479
MboI	GATC	1 cut(s)	477
MboII	GAAGA	1 cut(s)	169
MlsI	TGGCCA	1 cut(s)	552
MluCI	AATT	6 cut(s)	14, 232, 276, 512, 554, 677
MluNI	TGGCCA	1 cut(s)	552
MlyI	GAGTC	1 cut(s)	259
MmeI	TCCRAC	2 cut(s)	442, 643
MnlI	CCTC	7 cut(s)	149, 157, 215, 342, 580, 612, 697
Mox20I	TGGCCA	1 cut(s)	552
Mph1103I	ATGCAT	1 cut(s)	718
MscI	TGGCCA	1 cut(s)	552
MseI	TTAA	2 cut(s)	228, 320
Msp20I	TGGCCA	1 cut(s)	552
MspR9I	CCNGG	2 cut(s)	123, 135
MvaI	CCWGG	2 cut(s)	123, 135
MvnI	CGCG	1 cut(s)	175
NdeII	GATC	1 cut(s)	477
NlaIII	CATG	7 cut(s)	257, 391, 493, 529, 675, 736, 747
NlaIV	GGNNCC	2 cut(s)	6, 269
NmuCI	GTSAC	5 cut(s)	29, 70, 128, 528, 652
NsiI	ATGCAT	1 cut(s)	718
NspI	RCATGY	3 cut(s)	493, 529, 736
PagI	TCATGA	2 cut(s)	387, 743
PceI	AGGCCT	1 cut(s)	138
PciI	ACATGT	2 cut(s)	525, 732
PkrI	GCNGC	1 cut(s)	217
PleI	GAGTC	1 cut(s)	258
PpsI	GAGTC	1 cut(s)	258
PscI	ACATGT	2 cut(s)	525, 732
PsiI	TTATAA	2 cut(s)	237, 275
Psp6I	CCWGG	2 cut(s)	121, 133
PspEI	GGTNACC	1 cut(s)	70
PspGI	CCWGG	2 cut(s)	121, 133
PspN4I	GGNNCC	2 cut(s)	6, 269
PspPI	GGNCC	3 cut(s)	22, 149, 267
RsaI	GTAC	2 cut(s)	203, 488
RsaNI	GTAC	2 cut(s)	202, 487
SaqAI	TTAA	2 cut(s)	228, 320
SatI	GCNGC	1 cut(s)	216
Sau3AI	GATC	1 cut(s)	477
Sau96I	GGNCC	3 cut(s)	22, 149, 267
SchI	GAGTC	1 cut(s)	259
ScrFI	CCNGG	2 cut(s)	123, 135
SfaNI	GCATC	2 cut(s)	703, 725
SinI	GGWCC	2 cut(s)	22, 267
Sse9I	AATT	6 cut(s)	14, 232, 276, 512, 554, 677
SseBI	AGGCCT	1 cut(s)	138
SspMI	CTAG	2 cut(s)	506, 599
StuI	AGGCCT	1 cut(s)	138
StyD4I	CCNGG	2 cut(s)	121, 133
StyI	CCWWGG	1 cut(s)	25
TaaI	ACNGT	4 cut(s)	146, 185, 286, 313
TaiI	ACGT	1 cut(s)	13
TaqI	TCGA	1 cut(s)	499
TasI	AATT	6 cut(s)	14, 232, 276, 512, 554, 677
TatI	WGTACW	1 cut(s)	486
Tru1I	TTAA	2 cut(s)	228, 320
Tru9I	TTAA	2 cut(s)	228, 320
TseFI	GTSAC	5 cut(s)	29, 70, 128, 528, 652
TseI	GCWGC	1 cut(s)	215
Tsp45I	GTSAC	5 cut(s)	29, 70, 128, 528, 652
TspDTI	ATGAA	3 cut(s)	376, 404, 555
VpaK11BI	GGWCC	2 cut(s)	22, 267
XapI	RAATTY	1 cut(s)	512
XbaI	TCTAGA	1 cut(s)	505
XceI	RCATGY	3 cut(s)	493, 529, 736
XspI	CTAG	2 cut(s)	506, 599
Zsp2I	ATGCAT	1 cut(s)	718

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.